Wall clock time and date at job start Mon Mar 30 2020 02:16:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35366 * 126.38833 * 2 1 4 4 C 1.41493 * 105.50346 * 180.13891 * 3 2 1 5 5 C 1.47721 * 126.51625 * 179.84134 * 4 3 2 6 6 O 1.21566 * 119.99707 * 354.87304 * 5 4 3 7 7 N 1.34770 * 119.99955 * 174.87383 * 5 4 3 8 8 C 1.46500 * 119.99987 * 5.55191 * 7 5 4 9 9 C 1.50702 * 109.47049 * 275.41052 * 8 7 5 10 10 H 1.08000 * 120.00227 * 0.02562 * 9 8 7 11 11 C 1.37876 * 120.00177 * 180.02562 * 9 8 7 12 12 N 1.31514 * 119.99978 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 120.00173 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.46868 * 60.00057 * 13 11 9 15 15 H 1.48506 * 109.46864 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.47168 * 299.99875 * 13 11 9 17 17 C 1.46500 * 120.00201 * 185.55110 * 7 5 4 18 18 C 1.53001 * 109.47156 * 265.02656 * 17 7 5 19 19 C 1.52994 * 117.49588 * 243.74006 * 18 17 7 20 20 C 1.52997 * 117.49658 * 175.08181 * 18 17 7 21 21 N 1.31801 * 106.96647 * 359.58200 * 4 3 2 22 22 N 1.28464 * 110.07199 * 0.25837 * 21 4 3 23 23 C 1.46511 * 124.88483 * 179.97438 * 22 21 4 24 24 H 1.08997 * 109.46784 * 270.32745 * 1 2 3 25 25 H 1.08992 * 109.47216 * 30.32779 * 1 2 3 26 26 H 1.09001 * 109.46626 * 150.32695 * 1 2 3 27 27 H 1.08008 * 127.24385 * 359.97438 * 3 2 1 28 28 H 1.09001 * 109.47551 * 35.41187 * 8 7 5 29 29 H 1.09000 * 109.47016 * 155.41749 * 8 7 5 30 30 H 0.96996 * 120.00317 * 179.97438 * 12 11 9 31 31 H 1.09007 * 109.47272 * 145.02093 * 17 7 5 32 32 H 1.09008 * 109.46726 * 25.02720 * 17 7 5 33 33 H 1.08996 * 115.54701 * 29.41610 * 18 17 7 34 34 H 1.08995 * 117.50325 * 0.02562 * 19 18 17 35 35 H 1.09007 * 117.49036 * 145.02204 * 19 18 17 36 36 H 1.09002 * 117.50239 * 214.97857 * 20 18 17 37 37 H 1.09003 * 117.50126 * 0.02562 * 20 18 17 38 38 H 1.08994 * 109.46603 * 90.02704 * 23 22 21 39 39 H 1.09001 * 109.46838 * 210.02673 * 23 22 21 40 40 H 1.08995 * 109.46953 * 330.02981 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3101 1.0897 0.0000 4 6 3.6321 0.5853 -0.0033 5 6 4.8765 1.3812 -0.0079 6 8 4.8233 2.5919 -0.1032 7 7 6.0708 0.7650 0.0936 8 6 6.1431 -0.6982 0.0859 9 6 5.9079 -1.2201 1.4800 10 1 5.7226 -0.5309 2.2905 11 6 5.9292 -2.5775 1.7207 12 7 6.1543 -3.4169 0.7336 13 14 5.6369 -3.2245 3.4485 14 1 4.2934 -2.7983 3.9159 15 1 5.7104 -4.7077 3.4407 16 1 6.6741 -2.6818 4.3623 17 6 7.2968 1.5583 0.2116 18 6 7.9199 1.7432 -1.1735 19 6 9.2994 1.1276 -1.4153 20 6 9.1513 2.6450 -1.2794 21 7 3.5420 -0.7296 0.0042 22 7 2.3081 -1.0870 0.0063 23 6 1.8376 -2.4745 0.0137 24 1 -0.3633 0.0059 1.0276 25 1 -0.3633 0.8870 -0.5189 26 1 -0.3632 -0.8929 -0.5088 27 1 2.0057 2.1260 -0.0004 28 1 5.3813 -1.0962 -0.5844 29 1 7.1290 -1.0114 -0.2577 30 1 6.1697 -4.3719 0.9029 31 1 8.0029 1.0415 0.8617 32 1 7.0588 2.5337 0.6362 33 1 7.2182 1.7495 -2.0075 34 1 9.7630 0.5904 -0.5879 35 1 9.5055 0.7291 -2.4088 36 1 9.2601 3.2443 -2.1834 37 1 9.5178 3.1062 -0.3623 38 1 1.7207 -2.8129 1.0431 39 1 0.8782 -2.5356 -0.5001 40 1 2.5640 -3.1071 -0.4965 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331868464.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:30 Heat of formation + Delta-G solvation = 59.861914 kcal Electronic energy + Delta-G solvation = -22170.904652 eV Core-core repulsion = 18988.174869 eV Total energy + Delta-G solvation = -3182.729783 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.44008 -40.53223 -38.23339 -36.38318 -34.36056 -34.24834 -33.36048 -29.81000 -28.75957 -27.95093 -26.95599 -24.98262 -23.43575 -23.19903 -21.75007 -21.42237 -19.67333 -18.51975 -17.83003 -17.33873 -17.14463 -17.08921 -16.29660 -16.06928 -15.75727 -14.91086 -14.83889 -14.45919 -14.21159 -13.92645 -13.86708 -13.62620 -13.40646 -13.35074 -13.25069 -12.89658 -12.84315 -12.64316 -12.55870 -12.33500 -12.13627 -11.69868 -11.37824 -11.16256 -10.92797 -10.77828 -10.42515 -9.94142 -9.68230 -9.40009 -8.06970 -6.14404 0.82670 1.28694 1.36400 1.38326 1.45514 1.79156 2.30206 2.47758 2.58738 2.96419 3.23827 3.56504 3.84524 3.88853 3.96502 4.08118 4.12804 4.32084 4.37137 4.38049 4.58032 4.68110 4.75361 4.76998 4.81643 4.83130 4.85041 5.00894 5.01933 5.12690 5.17113 5.26205 5.27824 5.36989 5.55628 5.81338 5.92745 6.16626 6.23765 6.55499 6.87767 7.16023 7.40611 7.51095 9.00110 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.012074 B = 0.008147 C = 0.005414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2318.497198 B = 3435.965799 C = 5170.926356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.008 3.992 3 C -0.212 4.212 4 C -0.056 4.056 5 C 0.592 3.408 6 O -0.590 6.590 7 N -0.587 5.587 8 C 0.257 3.743 9 C -0.510 4.510 10 H 0.031 0.969 11 C 0.035 3.965 12 N -0.913 5.913 13 Si 0.939 3.061 14 H -0.282 1.282 15 H -0.276 1.276 16 H -0.278 1.278 17 C 0.149 3.851 18 C -0.184 4.184 19 C -0.173 4.173 20 C -0.152 4.152 21 N -0.222 5.222 22 N -0.292 5.292 23 C 0.083 3.917 24 H 0.088 0.912 25 H 0.097 0.903 26 H 0.092 0.908 27 H 0.161 0.839 28 H 0.050 0.950 29 H 0.013 0.987 30 H 0.263 0.737 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.094 0.906 35 H 0.100 0.900 36 H 0.109 0.891 37 H 0.106 0.894 38 H 0.084 0.916 39 H 0.135 0.865 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.693 3.079 -3.178 8.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.116 4.116 3 C -0.240 4.240 4 C -0.214 4.214 5 C 0.380 3.620 6 O -0.472 6.472 7 N -0.316 5.316 8 C 0.136 3.864 9 C -0.549 4.549 10 H 0.049 0.951 11 C -0.164 4.164 12 N -0.553 5.553 13 Si 0.766 3.234 14 H -0.208 1.208 15 H -0.201 1.201 16 H -0.203 1.203 17 C 0.027 3.973 18 C -0.203 4.203 19 C -0.210 4.210 20 C -0.189 4.189 21 N -0.058 5.058 22 N -0.081 5.081 23 C -0.056 4.056 24 H 0.106 0.894 25 H 0.115 0.885 26 H 0.111 0.889 27 H 0.179 0.821 28 H 0.067 0.933 29 H 0.031 0.969 30 H 0.072 0.928 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.101 0.899 34 H 0.112 0.888 35 H 0.118 0.882 36 H 0.128 0.872 37 H 0.124 0.876 38 H 0.103 0.897 39 H 0.153 0.847 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -7.067 2.362 -3.256 8.132 hybrid contribution -0.232 0.071 1.018 1.046 sum -7.299 2.433 -2.239 8.013 Atomic orbital electron populations 1.20469 0.83073 1.05331 1.04292 1.22046 0.97244 0.85693 1.06624 1.21616 0.90115 1.00286 1.11987 1.21901 0.95189 0.90817 1.13532 1.17322 0.82902 0.85852 0.75922 1.90614 1.87644 1.14275 1.54638 1.48137 1.05205 1.09424 1.68820 1.19290 0.96768 0.73162 0.97162 1.21243 1.48152 0.91701 0.93803 0.95061 1.25297 0.95101 0.96611 0.99432 1.70008 1.50405 1.02659 1.32229 0.85929 0.78318 0.77497 0.81670 1.20758 1.20102 1.20347 1.20988 0.85425 0.95480 0.95454 1.22547 0.91666 1.08193 0.97900 1.23085 0.98173 0.96421 1.03355 1.23030 0.98856 0.92725 1.04280 1.74447 1.01189 1.14115 1.16049 1.46089 1.02917 1.08925 1.50209 1.22362 1.02409 0.75923 1.04952 0.89383 0.88461 0.88908 0.82100 0.93280 0.96924 0.92804 0.90565 0.90808 0.89887 0.88767 0.88175 0.87227 0.87566 0.89726 0.84681 0.89896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.28 10.10 71.24 0.72 -0.56 16 2 C 0.01 0.24 6.92 41.40 0.29 0.52 16 3 C -0.21 -8.07 10.73 22.41 0.24 -7.83 16 4 C -0.06 -2.61 6.74 42.46 0.29 -2.32 16 5 C 0.59 29.42 7.62 86.75 0.66 30.08 16 6 O -0.59 -30.14 16.49 -3.92 -0.06 -30.20 16 7 N -0.59 -28.46 2.47 -829.70 -2.05 -30.51 16 8 C 0.26 13.61 4.78 85.63 0.41 14.02 16 9 C -0.51 -28.42 8.05 25.60 0.21 -28.22 16 10 H 0.03 1.83 7.81 -2.91 -0.02 1.81 16 11 C 0.04 1.92 5.46 84.65 0.46 2.38 16 12 N -0.91 -51.03 13.29 21.45 0.28 -50.74 16 13 Si 0.94 43.39 29.54 68.60 2.03 45.42 16 14 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 15 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 16 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 17 C 0.15 6.16 5.68 86.38 0.49 6.65 16 18 C -0.18 -6.53 6.01 -10.80 -0.06 -6.59 16 19 C -0.17 -5.17 10.18 30.62 0.31 -4.86 16 20 C -0.15 -4.04 10.25 30.62 0.31 -3.73 16 21 N -0.22 -10.29 7.64 -48.18 -0.37 -10.66 16 22 N -0.29 -10.50 3.70 -355.91 -1.32 -11.81 16 23 C 0.08 2.15 11.11 127.76 1.42 3.57 16 24 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 25 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.09 1.13 7.00 -2.39 -0.02 1.12 16 27 H 0.16 5.56 8.06 -2.91 -0.02 5.54 16 28 H 0.05 2.78 5.65 -2.39 -0.01 2.77 16 29 H 0.01 0.71 8.03 -2.39 -0.02 0.69 16 30 H 0.26 13.91 8.31 -92.71 -0.77 13.14 16 31 H 0.08 3.09 7.84 -2.38 -0.02 3.07 16 32 H 0.07 3.03 7.36 -2.38 -0.02 3.02 16 33 H 0.08 3.24 8.14 -2.39 -0.02 3.22 16 34 H 0.09 2.84 8.03 -2.39 -0.02 2.82 16 35 H 0.10 2.74 8.14 -2.38 -0.02 2.72 16 36 H 0.11 2.50 8.14 -2.39 -0.02 2.48 16 37 H 0.11 2.55 8.14 -2.39 -0.02 2.53 16 38 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 39 H 0.14 2.06 6.95 -2.39 -0.02 2.04 16 40 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 Total: -1.00 -72.30 338.25 5.28 -67.02 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: 1.03 Total: 18.38 kcal Atomic # 6 Polarization: -2.64 SS G_CDS: 5.74 Total: 3.11 kcal Atomic # 7 Polarization: -100.27 SS G_CDS: -3.45 Total: -103.72 kcal Atomic # 8 Polarization: -30.14 SS G_CDS: -0.06 Total: -30.20 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Total: -72.30 5.28 -67.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331868464.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.881 kcal (2) G-P(sol) polarization free energy of solvation -72.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds