Wall clock time and date at job start Mon Mar 30 2020 01:57:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35116 * 125.55361 * 2 1 4 4 C 1.40984 * 108.24111 * 179.71806 * 3 2 1 5 5 N 1.33306 * 126.35730 * 180.28853 * 4 3 2 6 6 C 1.32904 * 120.00368 * 0.15293 * 5 4 3 7 7 O 1.21596 * 119.99944 * 0.02562 * 6 5 4 8 8 C 1.50705 * 120.00249 * 179.97438 * 6 5 4 9 9 H 1.09003 * 109.47160 * 300.00310 * 8 6 5 10 10 C 1.52999 * 109.46921 * 60.00337 * 8 6 5 11 11 C 1.53000 * 109.47167 * 180.02562 * 8 6 5 12 12 C 1.52993 * 117.49769 * 128.62174 * 11 8 6 13 13 C 1.53000 * 60.00196 * 252.50863 * 12 11 8 14 14 N 1.37282 * 107.28592 * 0.42134 * 4 3 2 15 15 H 0.97001 * 126.35337 * 179.85518 * 14 4 3 16 16 N 1.36340 * 125.54588 * 179.97438 * 2 1 3 17 17 C 1.46495 * 125.86600 * 0.05047 * 16 2 1 18 18 C 1.50699 * 109.47371 * 84.99571 * 17 16 2 19 19 H 1.07998 * 120.00034 * 359.97438 * 18 17 16 20 20 C 1.37872 * 120.00059 * 180.02562 * 18 17 16 21 21 N 1.31522 * 120.00173 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 120.00116 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47028 * 59.99984 * 22 20 18 24 24 H 1.48504 * 109.47068 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.46841 * 299.99724 * 22 20 18 26 26 H 1.08998 * 109.47605 * 270.02932 * 1 2 3 27 27 H 1.09001 * 109.46555 * 30.02958 * 1 2 3 28 28 H 1.09000 * 109.47405 * 150.02336 * 1 2 3 29 29 H 1.08001 * 125.88259 * 359.97438 * 3 2 1 30 30 H 1.08998 * 109.47267 * 300.00220 * 10 8 6 31 31 H 1.09003 * 109.47226 * 60.00013 * 10 8 6 32 32 H 1.08997 * 109.46884 * 179.97438 * 10 8 6 33 33 H 1.09003 * 115.54874 * 274.33462 * 11 8 6 34 34 H 1.08998 * 117.50376 * 0.02562 * 12 11 8 35 35 H 1.09005 * 117.49587 * 145.01784 * 12 11 8 36 36 H 1.08990 * 117.50161 * 252.50697 * 13 12 11 37 37 H 1.09003 * 117.51394 * 107.48000 * 13 12 11 38 38 H 1.09000 * 109.47226 * 204.99953 * 17 16 2 39 39 H 1.09009 * 109.46961 * 324.99426 * 17 16 2 40 40 H 0.96994 * 119.99955 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2927 1.0993 0.0000 4 6 3.6386 0.6797 0.0066 5 7 4.7125 1.4695 0.0140 6 6 4.5660 2.7904 0.0189 7 8 3.4524 3.2786 0.0170 8 6 5.7801 3.6832 0.0279 9 1 6.3734 3.4808 0.9196 10 6 6.6236 3.4095 -1.2189 11 6 5.3364 5.1475 0.0327 12 6 5.9378 6.0644 1.0995 13 6 4.4773 5.6215 1.2066 14 7 3.6380 -0.6931 0.0009 15 1 4.4190 -1.2684 0.0013 16 7 2.2996 -1.1093 0.0005 17 6 1.8327 -2.4979 0.0001 18 6 1.5561 -2.9345 -1.4155 19 1 1.7121 -2.2463 -2.2331 20 6 1.1028 -4.2121 -1.6668 21 7 0.9123 -5.0500 -0.6711 22 14 0.7593 -4.7530 -3.4215 23 1 2.0044 -4.6498 -4.2241 24 1 0.2860 -6.1607 -3.4218 25 1 -0.2852 -3.8790 -4.0134 26 1 -0.3634 0.0005 1.0276 27 1 -0.3632 0.8898 -0.5143 28 1 -0.3634 -0.8902 -0.5135 29 1 1.9488 2.1231 -0.0004 30 1 6.9397 2.3664 -1.2219 31 1 6.0304 3.6120 -2.1106 32 1 7.5015 4.0556 -1.2126 33 1 5.1329 5.5802 -0.9469 34 1 6.6500 5.6246 1.7978 35 1 6.1305 7.1007 0.8220 36 1 3.7090 6.3664 0.9996 37 1 4.2279 4.8901 1.9754 38 1 2.5993 -3.1392 0.4349 39 1 0.9185 -2.5739 0.5890 40 1 0.5938 -5.9489 -0.8480 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331935075.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:34 Heat of formation + Delta-G solvation = 74.952628 kcal Electronic energy + Delta-G solvation = -21170.116776 eV Core-core repulsion = 17988.041375 eV Total energy + Delta-G solvation = -3182.075401 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.93129 -39.01921 -36.70100 -34.29056 -33.12382 -32.26016 -32.06039 -30.45316 -27.54058 -26.80535 -24.48759 -23.24610 -22.15751 -22.04632 -20.38362 -19.64388 -18.57338 -17.10705 -16.75095 -15.71232 -15.61127 -15.04706 -14.88383 -14.46421 -14.27204 -13.98356 -13.60225 -12.93306 -12.79090 -12.76808 -12.53621 -12.25744 -12.09476 -11.87496 -11.80075 -11.40564 -11.32453 -11.30205 -11.05951 -10.68256 -10.53760 -10.35161 -10.12595 -9.82753 -9.44291 -9.08530 -8.93606 -8.85278 -8.21439 -6.94695 -6.51482 -4.68059 1.66303 2.05571 2.98938 3.05651 3.11472 3.14844 3.95145 4.04324 4.29754 4.40208 4.78618 4.83687 4.96196 5.02856 5.17697 5.34994 5.45904 5.56569 5.62124 5.75743 5.77907 5.83410 5.86607 5.99056 6.12104 6.15552 6.22073 6.28483 6.32068 6.38279 6.49548 6.54768 6.57239 6.67722 6.78648 7.35925 7.48226 7.51954 7.67415 7.99862 8.38065 8.43655 9.02630 9.46831 10.50465 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.032683 B = 0.003582 C = 0.003440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.500869 B = 7815.411920 C = 8138.666278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.189 3.811 3 C -0.333 4.333 4 C 0.470 3.530 5 N -0.703 5.703 6 C 0.496 3.504 7 O -0.579 6.579 8 C -0.055 4.055 9 H 0.085 0.915 10 C -0.128 4.128 11 C -0.129 4.129 12 C -0.191 4.191 13 C -0.154 4.154 14 N -0.468 5.468 15 H 0.444 0.556 16 N -0.340 5.340 17 C 0.254 3.746 18 C -0.558 4.558 19 H 0.069 0.931 20 C 0.071 3.929 21 N -0.886 5.886 22 Si 0.909 3.091 23 H -0.273 1.273 24 H -0.283 1.283 25 H -0.271 1.271 26 H 0.083 0.917 27 H 0.088 0.912 28 H 0.091 0.909 29 H 0.183 0.817 30 H 0.068 0.932 31 H 0.050 0.950 32 H 0.053 0.947 33 H 0.100 0.900 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.051 0.949 39 H 0.068 0.932 40 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.961 10.840 2.435 11.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.062 3.938 3 C -0.365 4.365 4 C 0.222 3.778 5 N -0.467 5.467 6 C 0.282 3.718 7 O -0.461 6.461 8 C -0.076 4.076 9 H 0.103 0.897 10 C -0.186 4.186 11 C -0.148 4.148 12 C -0.228 4.228 13 C -0.191 4.191 14 N -0.189 5.189 15 H 0.292 0.708 16 N -0.126 5.126 17 C 0.138 3.862 18 C -0.596 4.596 19 H 0.087 0.913 20 C -0.134 4.134 21 N -0.523 5.523 22 Si 0.735 3.265 23 H -0.198 1.198 24 H -0.208 1.208 25 H -0.196 1.196 26 H 0.102 0.898 27 H 0.107 0.893 28 H 0.110 0.890 29 H 0.200 0.800 30 H 0.087 0.913 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.118 0.882 34 H 0.108 0.892 35 H 0.107 0.893 36 H 0.107 0.893 37 H 0.109 0.891 38 H 0.069 0.931 39 H 0.085 0.915 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.137 10.237 2.494 11.320 hybrid contribution -0.259 -0.580 -0.932 1.128 sum 3.877 9.658 1.563 10.524 Atomic orbital electron populations 1.20650 0.86433 1.05041 1.03611 1.21364 0.94505 0.85628 0.92313 1.22273 0.91242 1.00258 1.22761 1.19245 0.91794 0.82074 0.84719 1.68730 1.28002 1.05646 1.44366 1.20653 0.89074 0.86252 0.75836 1.90515 1.27215 1.79216 1.49147 1.20432 0.95538 0.91409 1.00260 0.89675 1.21574 0.98563 1.02276 0.96163 1.22002 1.04173 0.93849 0.94764 1.23069 0.97370 0.99464 1.02924 1.22691 0.92534 1.02756 1.01104 1.44529 0.98846 1.05295 1.70263 0.70835 1.47917 0.92795 1.08202 1.63673 1.20033 0.96483 0.70195 0.99521 1.21344 1.47836 0.98769 0.91627 0.91307 1.24947 0.94224 0.95764 0.98467 1.69889 1.43895 1.06970 1.31531 0.86355 0.79168 0.77842 0.83091 1.19837 1.20777 1.19625 0.89849 0.89341 0.89020 0.79997 0.91321 0.93120 0.92832 0.88187 0.89213 0.89310 0.89332 0.89141 0.93119 0.91456 0.91758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.40 9.92 36.01 0.36 -1.04 16 2 C 0.19 3.39 6.93 -81.70 -0.57 2.82 16 3 C -0.33 -6.46 9.41 -39.65 -0.37 -6.83 16 4 C 0.47 9.37 8.07 -155.19 -1.25 8.11 16 5 N -0.70 -14.03 10.31 -11.59 -0.12 -14.15 16 6 C 0.50 9.62 6.91 -11.81 -0.08 9.54 16 7 O -0.58 -12.23 11.98 5.28 0.06 -12.16 16 8 C -0.06 -0.85 2.95 -91.77 -0.27 -1.12 16 9 H 0.09 1.26 7.90 -51.93 -0.41 0.85 16 10 C -0.13 -1.76 9.08 37.16 0.34 -1.42 16 11 C -0.13 -1.82 4.73 -90.62 -0.43 -2.24 16 12 C -0.19 -2.22 10.18 -26.73 -0.27 -2.49 16 13 C -0.15 -2.13 8.97 -26.73 -0.24 -2.37 16 14 N -0.47 -8.61 7.37 31.32 0.23 -8.38 16 15 H 0.44 7.19 8.96 -182.55 -1.64 5.56 16 16 N -0.34 -6.50 3.63 -58.03 -0.21 -6.71 16 17 C 0.25 5.33 5.71 -5.20 -0.03 5.30 16 18 C -0.56 -13.19 9.39 -34.44 -0.32 -13.51 16 19 H 0.07 1.69 7.81 -52.49 -0.41 1.28 16 20 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 21 N -0.89 -22.32 13.29 55.43 0.74 -21.58 16 22 Si 0.91 19.12 29.54 -169.99 -5.02 14.10 16 23 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 24 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 25 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 26 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 27 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.09 1.39 7.80 -51.93 -0.40 0.99 16 29 H 0.18 3.67 5.77 -52.49 -0.30 3.36 16 30 H 0.07 0.98 8.05 -51.93 -0.42 0.57 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.10 1.39 8.11 -51.93 -0.42 0.97 16 34 H 0.09 0.97 8.05 -51.93 -0.42 0.56 16 35 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.09 1.38 8.10 -51.93 -0.42 0.95 16 38 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.07 1.42 7.88 -51.92 -0.41 1.01 16 40 H 0.27 6.56 8.31 -40.82 -0.34 6.22 16 LS Contribution 338.87 15.07 5.11 5.11 Total: -1.00 -27.86 338.87 -9.80 -37.66 By element: Atomic # 1 Polarization: 17.08 SS G_CDS: -7.35 Total: 9.74 kcal Atomic # 6 Polarization: -0.38 SS G_CDS: -3.24 Total: -3.62 kcal Atomic # 7 Polarization: -51.46 SS G_CDS: 0.64 Total: -50.82 kcal Atomic # 8 Polarization: -12.23 SS G_CDS: 0.06 Total: -12.16 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -5.02 Total: 14.10 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -27.86 -9.80 -37.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331935075.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.613 kcal (2) G-P(sol) polarization free energy of solvation -27.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.660 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds