Wall clock time and date at job start Mon Mar 30 2020 01:57:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35116 * 125.55361 * 2 1 4 4 C 1.40984 * 108.24111 * 179.71806 * 3 2 1 5 5 N 1.33306 * 126.35730 * 180.28853 * 4 3 2 6 6 C 1.32904 * 120.00368 * 0.15293 * 5 4 3 7 7 O 1.21596 * 119.99944 * 0.02562 * 6 5 4 8 8 C 1.50705 * 120.00249 * 179.97438 * 6 5 4 9 9 H 1.09003 * 109.47160 * 300.00310 * 8 6 5 10 10 C 1.52999 * 109.46921 * 60.00337 * 8 6 5 11 11 C 1.53000 * 109.47167 * 180.02562 * 8 6 5 12 12 C 1.52993 * 117.49769 * 128.62174 * 11 8 6 13 13 C 1.53000 * 60.00196 * 252.50863 * 12 11 8 14 14 N 1.37282 * 107.28592 * 0.42134 * 4 3 2 15 15 H 0.97001 * 126.35337 * 179.85518 * 14 4 3 16 16 N 1.36340 * 125.54588 * 179.97438 * 2 1 3 17 17 C 1.46495 * 125.86600 * 0.05047 * 16 2 1 18 18 C 1.50699 * 109.47371 * 84.99571 * 17 16 2 19 19 H 1.07998 * 120.00034 * 359.97438 * 18 17 16 20 20 C 1.37872 * 120.00059 * 180.02562 * 18 17 16 21 21 N 1.31522 * 120.00173 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 120.00116 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47028 * 59.99984 * 22 20 18 24 24 H 1.48504 * 109.47068 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.46841 * 299.99724 * 22 20 18 26 26 H 1.08998 * 109.47605 * 270.02932 * 1 2 3 27 27 H 1.09001 * 109.46555 * 30.02958 * 1 2 3 28 28 H 1.09000 * 109.47405 * 150.02336 * 1 2 3 29 29 H 1.08001 * 125.88259 * 359.97438 * 3 2 1 30 30 H 1.08998 * 109.47267 * 300.00220 * 10 8 6 31 31 H 1.09003 * 109.47226 * 60.00013 * 10 8 6 32 32 H 1.08997 * 109.46884 * 179.97438 * 10 8 6 33 33 H 1.09003 * 115.54874 * 274.33462 * 11 8 6 34 34 H 1.08998 * 117.50376 * 0.02562 * 12 11 8 35 35 H 1.09005 * 117.49587 * 145.01784 * 12 11 8 36 36 H 1.08990 * 117.50161 * 252.50697 * 13 12 11 37 37 H 1.09003 * 117.51394 * 107.48000 * 13 12 11 38 38 H 1.09000 * 109.47226 * 204.99953 * 17 16 2 39 39 H 1.09009 * 109.46961 * 324.99426 * 17 16 2 40 40 H 0.96994 * 119.99955 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2927 1.0993 0.0000 4 6 3.6386 0.6797 0.0066 5 7 4.7125 1.4695 0.0140 6 6 4.5660 2.7904 0.0189 7 8 3.4524 3.2786 0.0170 8 6 5.7801 3.6832 0.0279 9 1 6.3734 3.4808 0.9196 10 6 6.6236 3.4095 -1.2189 11 6 5.3364 5.1475 0.0327 12 6 5.9378 6.0644 1.0995 13 6 4.4773 5.6215 1.2066 14 7 3.6380 -0.6931 0.0009 15 1 4.4190 -1.2684 0.0013 16 7 2.2996 -1.1093 0.0005 17 6 1.8327 -2.4979 0.0001 18 6 1.5561 -2.9345 -1.4155 19 1 1.7121 -2.2463 -2.2331 20 6 1.1028 -4.2121 -1.6668 21 7 0.9123 -5.0500 -0.6711 22 14 0.7593 -4.7530 -3.4215 23 1 2.0044 -4.6498 -4.2241 24 1 0.2860 -6.1607 -3.4218 25 1 -0.2852 -3.8790 -4.0134 26 1 -0.3634 0.0005 1.0276 27 1 -0.3632 0.8898 -0.5143 28 1 -0.3634 -0.8902 -0.5135 29 1 1.9488 2.1231 -0.0004 30 1 6.9397 2.3664 -1.2219 31 1 6.0304 3.6120 -2.1106 32 1 7.5015 4.0556 -1.2126 33 1 5.1329 5.5802 -0.9469 34 1 6.6500 5.6246 1.7978 35 1 6.1305 7.1007 0.8220 36 1 3.7090 6.3664 0.9996 37 1 4.2279 4.8901 1.9754 38 1 2.5993 -3.1392 0.4349 39 1 0.9185 -2.5739 0.5890 40 1 0.5938 -5.9489 -0.8480 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331935075.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:34 Heat of formation + Delta-G solvation = 59.784970 kcal Electronic energy + Delta-G solvation = -21170.774495 eV Core-core repulsion = 17988.041375 eV Total energy + Delta-G solvation = -3182.733120 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.43921 -40.39650 -37.90721 -35.96201 -34.75661 -33.69216 -33.33942 -32.03061 -28.85002 -28.50179 -25.79918 -24.82642 -23.51978 -23.11034 -21.70013 -21.06624 -19.95723 -18.89680 -18.33610 -17.17221 -16.94070 -16.65651 -16.31670 -15.88834 -15.51739 -15.36313 -14.99282 -14.41386 -14.32716 -14.21804 -13.78388 -13.68991 -13.41454 -13.22993 -13.14708 -12.83408 -12.73452 -12.55932 -12.32794 -12.26815 -12.05199 -11.81650 -11.21083 -11.07504 -10.90711 -10.78805 -10.49830 -10.32387 -9.74801 -8.60057 -8.27689 -6.57778 0.16261 0.55054 1.38802 1.41350 1.47731 1.50716 2.29429 2.68652 2.91998 2.92848 3.00750 3.63929 3.71283 3.79799 4.09523 4.20061 4.27205 4.31182 4.33557 4.51486 4.70894 4.73855 4.77538 4.81479 4.85377 4.87954 4.93192 5.07464 5.08737 5.12319 5.22626 5.30133 5.32597 5.34521 5.47950 5.49513 5.68267 5.99590 6.14165 6.42605 6.62421 6.91465 7.16033 7.95039 8.65125 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.032683 B = 0.003582 C = 0.003440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.500869 B = 7815.411920 C = 8138.666278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.197 3.803 3 C -0.347 4.347 4 C 0.455 3.545 5 N -0.712 5.712 6 C 0.482 3.518 7 O -0.602 6.602 8 C -0.052 4.052 9 H 0.092 0.908 10 C -0.121 4.121 11 C -0.145 4.145 12 C -0.159 4.159 13 C -0.170 4.170 14 N -0.464 5.464 15 H 0.452 0.548 16 N -0.346 5.346 17 C 0.267 3.733 18 C -0.564 4.564 19 H 0.057 0.943 20 C 0.033 3.967 21 N -0.912 5.912 22 Si 0.962 3.038 23 H -0.277 1.277 24 H -0.279 1.279 25 H -0.267 1.267 26 H 0.109 0.891 27 H 0.109 0.891 28 H 0.082 0.918 29 H 0.175 0.825 30 H 0.058 0.942 31 H 0.041 0.959 32 H 0.082 0.918 33 H 0.100 0.900 34 H 0.100 0.900 35 H 0.112 0.888 36 H 0.092 0.908 37 H 0.069 0.931 38 H 0.042 0.958 39 H 0.070 0.930 40 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.290 11.737 2.156 12.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.070 3.930 3 C -0.379 4.379 4 C 0.206 3.794 5 N -0.477 5.477 6 C 0.269 3.731 7 O -0.486 6.486 8 C -0.073 4.073 9 H 0.110 0.890 10 C -0.179 4.179 11 C -0.164 4.164 12 C -0.195 4.195 13 C -0.208 4.208 14 N -0.187 5.187 15 H 0.300 0.700 16 N -0.132 5.132 17 C 0.150 3.850 18 C -0.603 4.603 19 H 0.075 0.925 20 C -0.169 4.169 21 N -0.549 5.549 22 Si 0.787 3.213 23 H -0.202 1.202 24 H -0.204 1.204 25 H -0.191 1.191 26 H 0.127 0.873 27 H 0.128 0.872 28 H 0.101 0.899 29 H 0.192 0.808 30 H 0.077 0.923 31 H 0.060 0.940 32 H 0.101 0.899 33 H 0.118 0.882 34 H 0.119 0.881 35 H 0.131 0.869 36 H 0.111 0.889 37 H 0.088 0.912 38 H 0.060 0.940 39 H 0.088 0.912 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.480 11.140 2.217 12.210 hybrid contribution -0.366 -0.833 -0.814 1.221 sum 4.115 10.307 1.403 11.186 Atomic orbital electron populations 1.20820 0.83662 1.05585 1.05400 1.21918 0.96059 0.84598 0.90440 1.22201 0.91417 1.00286 1.23991 1.19498 0.92320 0.82547 0.85008 1.68837 1.28121 1.06111 1.44589 1.21460 0.90198 0.86428 0.75048 1.90491 1.28449 1.79490 1.50149 1.20468 0.94040 0.91490 1.01319 0.88986 1.21529 0.99161 1.02314 0.94867 1.22009 1.05614 0.93479 0.95248 1.23153 0.95493 1.00084 1.00805 1.22662 0.94440 1.02916 1.00736 1.44518 0.98943 1.05043 1.70222 0.69952 1.47825 0.93279 1.08013 1.64098 1.19727 0.96220 0.70822 0.98194 1.21493 1.47583 0.98713 0.92465 0.92457 1.25574 0.94105 0.95860 1.01401 1.69953 1.44722 1.07281 1.32970 0.85530 0.78790 0.77612 0.79386 1.20199 1.20354 1.19131 0.87318 0.87220 0.89888 0.80787 0.92319 0.93977 0.89882 0.88194 0.88143 0.86939 0.88925 0.91193 0.93992 0.91235 0.91614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.58 9.92 71.24 0.71 -1.87 16 2 C 0.20 6.93 6.93 41.14 0.29 7.22 16 3 C -0.35 -13.51 9.41 22.22 0.21 -13.30 16 4 C 0.46 18.28 8.07 133.83 1.08 19.36 16 5 N -0.71 -28.67 10.31 -309.87 -3.19 -31.87 16 6 C 0.48 18.80 6.91 87.95 0.61 19.41 16 7 O -0.60 -25.85 11.98 -4.02 -0.05 -25.90 16 8 C -0.05 -1.56 2.95 -11.54 -0.03 -1.60 16 9 H 0.09 2.61 7.90 -2.39 -0.02 2.59 16 10 C -0.12 -3.17 9.08 71.98 0.65 -2.51 16 11 C -0.14 -3.88 4.73 -10.80 -0.05 -3.93 16 12 C -0.16 -3.25 10.18 30.59 0.31 -2.94 16 13 C -0.17 -4.58 8.97 30.59 0.27 -4.31 16 14 N -0.46 -17.18 7.37 -54.81 -0.40 -17.59 16 15 H 0.45 14.74 8.96 -213.28 -1.91 12.83 16 16 N -0.35 -13.16 3.63 -337.50 -1.23 -14.39 16 17 C 0.27 11.17 5.71 85.63 0.49 11.66 16 18 C -0.56 -26.49 9.39 25.60 0.24 -26.25 16 19 H 0.06 2.79 7.81 -2.91 -0.02 2.77 16 20 C 0.03 1.59 5.46 84.65 0.46 2.05 16 21 N -0.91 -45.49 13.29 21.45 0.28 -45.21 16 22 Si 0.96 38.57 29.54 68.60 2.03 40.60 16 23 H -0.28 -11.17 7.11 99.48 0.71 -10.47 16 24 H -0.28 -10.92 7.11 99.48 0.71 -10.21 16 25 H -0.27 -10.42 7.11 99.48 0.71 -9.71 16 26 H 0.11 2.38 8.14 -2.39 -0.02 2.36 16 27 H 0.11 2.46 8.14 -2.39 -0.02 2.44 16 28 H 0.08 2.41 7.80 -2.39 -0.02 2.39 16 29 H 0.18 7.12 5.77 -2.91 -0.02 7.10 16 30 H 0.06 1.64 8.05 -2.39 -0.02 1.62 16 31 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.10 2.65 8.11 -2.39 -0.02 2.64 16 34 H 0.10 1.87 8.05 -2.39 -0.02 1.85 16 35 H 0.11 1.81 8.14 -2.38 -0.02 1.79 16 36 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 37 H 0.07 2.15 8.10 -2.39 -0.02 2.13 16 38 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.07 2.90 7.88 -2.38 -0.02 2.88 16 40 H 0.27 13.06 8.31 -92.71 -0.77 12.29 16 Total: -1.00 -58.96 338.87 1.80 -57.16 By element: Atomic # 1 Polarization: 35.07 SS G_CDS: -0.87 Total: 34.20 kcal Atomic # 6 Polarization: -2.25 SS G_CDS: 5.23 Total: 2.99 kcal Atomic # 7 Polarization: -104.51 SS G_CDS: -4.54 Total: -109.05 kcal Atomic # 8 Polarization: -25.85 SS G_CDS: -0.05 Total: -25.90 kcal Atomic # 14 Polarization: 38.57 SS G_CDS: 2.03 Total: 40.60 kcal Total: -58.96 1.80 -57.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331935075.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.940 kcal (2) G-P(sol) polarization free energy of solvation -58.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds