Wall clock time and date at job start Mon Mar 30 2020 01:57:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35123 * 125.54518 * 2 1 4 4 C 1.40989 * 108.23873 * 180.02562 * 3 2 1 5 5 N 1.33306 * 126.35867 * 179.97438 * 4 3 2 6 6 C 1.32909 * 119.99607 * 0.02587 * 5 4 3 7 7 O 1.21592 * 120.00517 * 359.97438 * 6 5 4 8 8 C 1.50707 * 119.99743 * 180.02562 * 6 5 4 9 9 H 1.08996 * 109.47127 * 59.99930 * 8 6 5 10 10 C 1.53005 * 109.46776 * 299.99639 * 8 6 5 11 11 C 1.53001 * 109.46935 * 179.97438 * 8 6 5 12 12 C 1.53000 * 117.50223 * 299.99870 * 11 8 6 13 13 C 1.52997 * 117.49889 * 231.37132 * 11 8 6 14 14 N 1.37282 * 107.28181 * 0.22739 * 4 3 2 15 15 H 0.96999 * 126.33940 * 179.75285 * 14 4 3 16 16 N 1.36328 * 125.55291 * 180.02562 * 2 1 3 17 17 C 1.46498 * 125.86573 * 359.97438 * 16 2 1 18 18 C 1.50694 * 109.47396 * 85.00145 * 17 16 2 19 19 H 1.08007 * 119.99822 * 359.97438 * 18 17 16 20 20 C 1.37876 * 120.00314 * 180.02562 * 18 17 16 21 21 N 1.31515 * 119.99925 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 120.00133 * 179.97438 * 20 18 17 23 23 H 1.48493 * 109.47197 * 89.99769 * 22 20 18 24 24 H 1.48494 * 109.47107 * 209.99862 * 22 20 18 25 25 H 1.48498 * 109.46951 * 329.99992 * 22 20 18 26 26 H 1.09001 * 109.47438 * 89.98069 * 1 2 3 27 27 H 1.09008 * 109.46623 * 209.97550 * 1 2 3 28 28 H 1.08993 * 109.47525 * 329.97289 * 1 2 3 29 29 H 1.08001 * 125.88266 * 359.97438 * 3 2 1 30 30 H 1.08997 * 109.46835 * 180.02562 * 10 8 6 31 31 H 1.08994 * 109.46791 * 300.00104 * 10 8 6 32 32 H 1.08997 * 109.46713 * 60.00210 * 10 8 6 33 33 H 1.09002 * 115.55911 * 85.68560 * 11 8 6 34 34 H 1.08990 * 117.49990 * 145.01974 * 12 11 8 35 35 H 1.09004 * 117.49237 * 359.97438 * 12 11 8 36 36 H 1.08999 * 117.49685 * 0.02562 * 13 11 8 37 37 H 1.08997 * 117.50044 * 214.98097 * 13 11 8 38 38 H 1.09007 * 109.47071 * 205.00344 * 17 16 2 39 39 H 1.08996 * 109.47202 * 324.99527 * 17 16 2 40 40 H 0.97000 * 119.99753 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2925 1.0994 0.0000 4 6 3.6386 0.6800 -0.0006 5 7 4.7125 1.4699 -0.0013 6 6 4.5657 2.7908 -0.0009 7 8 3.4521 3.2789 -0.0004 8 6 5.7797 3.6838 -0.0022 9 1 6.3758 3.4853 -0.8929 10 6 6.6194 3.4048 1.2461 11 6 5.3358 5.1480 -0.0021 12 6 4.4804 5.6270 -1.1767 13 6 5.9406 6.0696 -1.0631 14 7 3.6380 -0.6928 -0.0062 15 1 4.4191 -1.2679 -0.0112 16 7 2.2997 -1.1091 -0.0005 17 6 1.8329 -2.4978 -0.0006 18 6 1.5549 -2.9342 -1.4159 19 1 1.7101 -2.2459 -2.2336 20 6 1.1016 -4.2119 -1.6669 21 7 0.9122 -5.0499 -0.6712 22 14 0.7564 -4.7527 -3.4213 23 1 1.9867 -5.3408 -4.0092 24 1 -0.3269 -5.7683 -3.4221 25 1 0.3350 -3.5788 -4.2273 26 1 -0.3634 0.0003 -1.0277 27 1 -0.3633 -0.8903 0.5135 28 1 -0.3634 0.8897 0.5142 29 1 1.9486 2.1232 -0.0004 30 1 7.4972 4.0509 1.2453 31 1 6.0232 3.6033 2.1367 32 1 6.9355 2.3617 1.2455 33 1 5.1295 5.5768 0.9785 34 1 3.7114 6.3709 -0.9688 35 1 4.2342 4.8990 -1.9498 36 1 6.6544 5.6327 -1.7614 37 1 6.1321 7.1047 -0.7805 38 1 2.6001 -3.1390 0.4334 39 1 0.9195 -2.5740 0.5892 40 1 0.5929 -5.9487 -0.8478 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331935076.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:37 Heat of formation + Delta-G solvation = 75.246476 kcal Electronic energy + Delta-G solvation = -21171.021993 eV Core-core repulsion = 17988.959335 eV Total energy + Delta-G solvation = -3182.062658 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.93445 -39.01911 -36.69796 -34.28895 -33.13022 -32.26366 -32.06263 -30.45508 -27.54869 -26.80598 -24.49575 -23.25190 -22.15059 -22.04190 -20.38454 -19.64462 -18.57523 -17.12450 -16.73702 -15.71632 -15.60001 -15.05843 -14.91843 -14.44715 -14.26553 -13.98322 -13.61407 -12.95001 -12.83587 -12.68670 -12.55196 -12.27078 -12.16215 -11.88136 -11.70231 -11.47983 -11.36616 -11.23071 -11.07686 -10.68377 -10.54154 -10.33433 -10.12077 -9.82400 -9.44211 -9.08530 -8.94056 -8.85115 -8.21460 -6.94764 -6.51486 -4.67713 1.66332 2.05377 2.99043 3.03930 3.12172 3.16071 3.95535 4.04463 4.30208 4.39541 4.78891 4.84042 4.96317 5.02424 5.18148 5.35041 5.45773 5.53222 5.61588 5.76424 5.79518 5.83859 5.85396 5.98708 6.10876 6.16384 6.21249 6.23698 6.32236 6.37749 6.49134 6.54828 6.58449 6.67287 6.78042 7.36134 7.48259 7.51839 7.67340 7.99739 8.38156 8.43715 9.02891 9.46816 10.50567 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.029635 B = 0.003559 C = 0.003545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.589303 B = 7866.030907 C = 7895.756015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.189 3.811 3 C -0.334 4.334 4 C 0.471 3.529 5 N -0.703 5.703 6 C 0.496 3.504 7 O -0.579 6.579 8 C -0.056 4.056 9 H 0.085 0.915 10 C -0.128 4.128 11 C -0.129 4.129 12 C -0.154 4.154 13 C -0.191 4.191 14 N -0.468 5.468 15 H 0.445 0.555 16 N -0.339 5.339 17 C 0.254 3.746 18 C -0.556 4.556 19 H 0.069 0.931 20 C 0.071 3.929 21 N -0.886 5.886 22 Si 0.909 3.091 23 H -0.276 1.276 24 H -0.281 1.281 25 H -0.270 1.270 26 H 0.090 0.910 27 H 0.080 0.920 28 H 0.086 0.914 29 H 0.183 0.817 30 H 0.053 0.947 31 H 0.049 0.951 32 H 0.068 0.932 33 H 0.100 0.900 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.051 0.949 39 H 0.068 0.932 40 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.984 10.891 2.100 11.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.061 3.939 3 C -0.366 4.366 4 C 0.222 3.778 5 N -0.467 5.467 6 C 0.282 3.718 7 O -0.461 6.461 8 C -0.077 4.077 9 H 0.103 0.897 10 C -0.185 4.185 11 C -0.148 4.148 12 C -0.191 4.191 13 C -0.228 4.228 14 N -0.189 5.189 15 H 0.292 0.708 16 N -0.126 5.126 17 C 0.137 3.863 18 C -0.594 4.594 19 H 0.087 0.913 20 C -0.134 4.134 21 N -0.523 5.523 22 Si 0.735 3.265 23 H -0.202 1.202 24 H -0.206 1.206 25 H -0.194 1.194 26 H 0.109 0.891 27 H 0.099 0.901 28 H 0.104 0.896 29 H 0.200 0.800 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.087 0.913 33 H 0.118 0.882 34 H 0.107 0.893 35 H 0.109 0.891 36 H 0.108 0.892 37 H 0.107 0.893 38 H 0.069 0.931 39 H 0.085 0.915 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.158 10.294 2.163 11.311 hybrid contribution -0.264 -0.607 -0.957 1.164 sum 3.894 9.687 1.205 10.510 Atomic orbital electron populations 1.20595 0.86372 1.03862 1.04284 1.21367 0.94499 0.85664 0.92328 1.22268 0.91233 1.00239 1.22831 1.19243 0.91795 0.82072 0.84715 1.68736 1.27995 1.05638 1.44368 1.20652 0.89072 0.86252 0.75833 1.90514 1.27210 1.79217 1.49141 1.20436 0.95565 0.91417 1.00266 0.89651 1.21570 0.98584 1.02245 0.96123 1.21999 1.04212 0.93788 0.94790 1.22696 0.92561 1.02761 1.01059 1.23072 0.97378 0.99431 1.02962 1.44525 0.98827 1.05297 1.70289 0.70828 1.47905 0.92819 1.08206 1.63621 1.20036 0.96495 0.70182 0.99550 1.21372 1.47683 0.98737 0.91626 0.91294 1.24945 0.94235 0.95786 0.98464 1.69897 1.44037 1.06926 1.31451 0.86301 0.78371 0.78734 0.83073 1.20190 1.20646 1.19414 0.89148 0.90108 0.89556 0.79988 0.92831 0.93155 0.91343 0.88201 0.89328 0.89115 0.89205 0.89309 0.93112 0.91455 0.91826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.31 10.09 36.01 0.36 -0.95 16 2 C 0.19 3.38 6.93 -81.70 -0.57 2.81 16 3 C -0.33 -6.46 9.41 -39.65 -0.37 -6.83 16 4 C 0.47 9.36 8.07 -155.18 -1.25 8.11 16 5 N -0.70 -14.02 10.31 -11.59 -0.12 -14.14 16 6 C 0.50 9.61 6.91 -11.81 -0.08 9.53 16 7 O -0.58 -12.22 11.98 5.28 0.06 -12.15 16 8 C -0.06 -0.86 2.95 -91.76 -0.27 -1.13 16 9 H 0.09 1.28 7.90 -51.93 -0.41 0.87 16 10 C -0.13 -1.71 9.08 37.16 0.34 -1.38 16 11 C -0.13 -1.81 4.73 -90.62 -0.43 -2.24 16 12 C -0.15 -2.15 8.97 -26.73 -0.24 -2.39 16 13 C -0.19 -2.24 10.18 -26.73 -0.27 -2.51 16 14 N -0.47 -8.60 7.37 31.33 0.23 -8.37 16 15 H 0.44 7.19 8.96 -182.55 -1.64 5.55 16 16 N -0.34 -6.50 3.63 -58.03 -0.21 -6.71 16 17 C 0.25 5.33 5.93 -5.20 -0.03 5.30 16 18 C -0.56 -13.18 9.39 -34.44 -0.32 -13.50 16 19 H 0.07 1.70 7.81 -52.48 -0.41 1.29 16 20 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 21 N -0.89 -22.34 13.29 55.43 0.74 -21.61 16 22 Si 0.91 19.15 29.54 -169.99 -5.02 14.13 16 23 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 24 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 25 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 26 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16 27 H 0.08 1.12 7.14 -51.92 -0.37 0.75 16 28 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.18 3.66 5.77 -52.49 -0.30 3.36 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.07 0.96 8.05 -51.93 -0.42 0.54 16 33 H 0.10 1.37 8.11 -51.93 -0.42 0.95 16 34 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.09 1.41 8.10 -51.93 -0.42 0.99 16 36 H 0.09 0.99 8.05 -51.93 -0.42 0.58 16 37 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 39 H 0.07 1.42 7.18 -51.93 -0.37 1.05 16 40 H 0.27 6.53 8.31 -40.82 -0.34 6.19 16 LS Contribution 337.90 15.07 5.09 5.09 Total: -1.00 -27.95 337.90 -9.74 -37.69 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: -7.28 Total: 9.63 kcal Atomic # 6 Polarization: -0.33 SS G_CDS: -3.23 Total: -3.56 kcal Atomic # 7 Polarization: -51.46 SS G_CDS: 0.64 Total: -50.83 kcal Atomic # 8 Polarization: -12.22 SS G_CDS: 0.06 Total: -12.15 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -5.02 Total: 14.13 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -27.95 -9.74 -37.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331935076.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.937 kcal (2) G-P(sol) polarization free energy of solvation -27.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.690 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds