Wall clock time and date at job start Mon Mar 30 2020 01:57:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35123 * 125.54518 * 2 1 4 4 C 1.40989 * 108.23873 * 180.02562 * 3 2 1 5 5 N 1.33306 * 126.35867 * 179.97438 * 4 3 2 6 6 C 1.32909 * 119.99607 * 0.02587 * 5 4 3 7 7 O 1.21592 * 120.00517 * 359.97438 * 6 5 4 8 8 C 1.50707 * 119.99743 * 180.02562 * 6 5 4 9 9 H 1.08996 * 109.47127 * 59.99930 * 8 6 5 10 10 C 1.53005 * 109.46776 * 299.99639 * 8 6 5 11 11 C 1.53001 * 109.46935 * 179.97438 * 8 6 5 12 12 C 1.53000 * 117.50223 * 299.99870 * 11 8 6 13 13 C 1.52997 * 117.49889 * 231.37132 * 11 8 6 14 14 N 1.37282 * 107.28181 * 0.22739 * 4 3 2 15 15 H 0.96999 * 126.33940 * 179.75285 * 14 4 3 16 16 N 1.36328 * 125.55291 * 180.02562 * 2 1 3 17 17 C 1.46498 * 125.86573 * 359.97438 * 16 2 1 18 18 C 1.50694 * 109.47396 * 85.00145 * 17 16 2 19 19 H 1.08007 * 119.99822 * 359.97438 * 18 17 16 20 20 C 1.37876 * 120.00314 * 180.02562 * 18 17 16 21 21 N 1.31515 * 119.99925 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 120.00133 * 179.97438 * 20 18 17 23 23 H 1.48493 * 109.47197 * 89.99769 * 22 20 18 24 24 H 1.48494 * 109.47107 * 209.99862 * 22 20 18 25 25 H 1.48498 * 109.46951 * 329.99992 * 22 20 18 26 26 H 1.09001 * 109.47438 * 89.98069 * 1 2 3 27 27 H 1.09008 * 109.46623 * 209.97550 * 1 2 3 28 28 H 1.08993 * 109.47525 * 329.97289 * 1 2 3 29 29 H 1.08001 * 125.88266 * 359.97438 * 3 2 1 30 30 H 1.08997 * 109.46835 * 180.02562 * 10 8 6 31 31 H 1.08994 * 109.46791 * 300.00104 * 10 8 6 32 32 H 1.08997 * 109.46713 * 60.00210 * 10 8 6 33 33 H 1.09002 * 115.55911 * 85.68560 * 11 8 6 34 34 H 1.08990 * 117.49990 * 145.01974 * 12 11 8 35 35 H 1.09004 * 117.49237 * 359.97438 * 12 11 8 36 36 H 1.08999 * 117.49685 * 0.02562 * 13 11 8 37 37 H 1.08997 * 117.50044 * 214.98097 * 13 11 8 38 38 H 1.09007 * 109.47071 * 205.00344 * 17 16 2 39 39 H 1.08996 * 109.47202 * 324.99527 * 17 16 2 40 40 H 0.97000 * 119.99753 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2925 1.0994 0.0000 4 6 3.6386 0.6800 -0.0006 5 7 4.7125 1.4699 -0.0013 6 6 4.5657 2.7908 -0.0009 7 8 3.4521 3.2789 -0.0004 8 6 5.7797 3.6838 -0.0022 9 1 6.3758 3.4853 -0.8929 10 6 6.6194 3.4048 1.2461 11 6 5.3358 5.1480 -0.0021 12 6 4.4804 5.6270 -1.1767 13 6 5.9406 6.0696 -1.0631 14 7 3.6380 -0.6928 -0.0062 15 1 4.4191 -1.2679 -0.0112 16 7 2.2997 -1.1091 -0.0005 17 6 1.8329 -2.4978 -0.0006 18 6 1.5549 -2.9342 -1.4159 19 1 1.7101 -2.2459 -2.2336 20 6 1.1016 -4.2119 -1.6669 21 7 0.9122 -5.0499 -0.6712 22 14 0.7564 -4.7527 -3.4213 23 1 1.9867 -5.3408 -4.0092 24 1 -0.3269 -5.7683 -3.4221 25 1 0.3350 -3.5788 -4.2273 26 1 -0.3634 0.0003 -1.0277 27 1 -0.3633 -0.8903 0.5135 28 1 -0.3634 0.8897 0.5142 29 1 1.9486 2.1232 -0.0004 30 1 7.4972 4.0509 1.2453 31 1 6.0232 3.6033 2.1367 32 1 6.9355 2.3617 1.2455 33 1 5.1295 5.5768 0.9785 34 1 3.7114 6.3709 -0.9688 35 1 4.2342 4.8990 -1.9498 36 1 6.6544 5.6327 -1.7614 37 1 6.1321 7.1047 -0.7805 38 1 2.6001 -3.1390 0.4334 39 1 0.9195 -2.5740 0.5892 40 1 0.5929 -5.9487 -0.8478 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331935076.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:36 Heat of formation + Delta-G solvation = 59.992591 kcal Electronic energy + Delta-G solvation = -21171.683451 eV Core-core repulsion = 17988.959335 eV Total energy + Delta-G solvation = -3182.724117 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.44198 -40.39750 -37.90907 -35.96092 -34.76260 -33.69412 -33.33853 -32.03154 -28.85635 -28.50318 -25.79974 -24.82954 -23.51963 -23.11400 -21.70247 -21.06724 -19.95827 -18.91228 -18.32715 -17.17603 -16.93959 -16.56758 -16.47944 -15.82205 -15.48793 -15.40786 -15.00095 -14.43656 -14.29741 -14.23487 -13.81080 -13.70230 -13.39041 -13.24192 -13.06392 -12.90971 -12.74660 -12.53712 -12.31242 -12.30012 -12.02491 -11.81588 -11.21233 -11.07809 -10.90861 -10.79390 -10.50076 -10.32563 -9.74821 -8.60200 -8.27752 -6.57637 0.16128 0.54928 1.37015 1.41291 1.48530 1.51294 2.29317 2.68782 2.91496 2.92964 3.00495 3.63537 3.71100 3.79840 4.09498 4.20735 4.25833 4.30673 4.33857 4.51773 4.65301 4.71494 4.79817 4.83514 4.84992 4.87880 4.91890 5.07904 5.09004 5.12515 5.22726 5.30004 5.31855 5.33985 5.48304 5.49635 5.68283 5.99434 6.14164 6.42650 6.62337 6.91402 7.16106 7.95017 8.65219 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.029635 B = 0.003559 C = 0.003545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.589303 B = 7866.030907 C = 7895.756015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.196 3.804 3 C -0.347 4.347 4 C 0.455 3.545 5 N -0.712 5.712 6 C 0.482 3.518 7 O -0.602 6.602 8 C -0.053 4.053 9 H 0.090 0.910 10 C -0.120 4.120 11 C -0.143 4.143 12 C -0.172 4.172 13 C -0.159 4.159 14 N -0.464 5.464 15 H 0.452 0.548 16 N -0.346 5.346 17 C 0.267 3.733 18 C -0.563 4.563 19 H 0.057 0.943 20 C 0.033 3.967 21 N -0.912 5.912 22 Si 0.963 3.037 23 H -0.277 1.277 24 H -0.276 1.276 25 H -0.270 1.270 26 H 0.098 0.902 27 H 0.084 0.916 28 H 0.113 0.887 29 H 0.175 0.825 30 H 0.082 0.918 31 H 0.043 0.957 32 H 0.058 0.942 33 H 0.102 0.898 34 H 0.093 0.907 35 H 0.067 0.933 36 H 0.099 0.901 37 H 0.113 0.887 38 H 0.042 0.958 39 H 0.070 0.930 40 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.333 11.744 1.787 12.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.069 3.931 3 C -0.379 4.379 4 C 0.206 3.794 5 N -0.476 5.476 6 C 0.269 3.731 7 O -0.486 6.486 8 C -0.074 4.074 9 H 0.108 0.892 10 C -0.178 4.178 11 C -0.162 4.162 12 C -0.209 4.209 13 C -0.196 4.196 14 N -0.187 5.187 15 H 0.301 0.699 16 N -0.132 5.132 17 C 0.150 3.850 18 C -0.601 4.601 19 H 0.075 0.925 20 C -0.170 4.170 21 N -0.550 5.550 22 Si 0.788 3.212 23 H -0.203 1.203 24 H -0.201 1.201 25 H -0.194 1.194 26 H 0.116 0.884 27 H 0.103 0.897 28 H 0.132 0.868 29 H 0.192 0.808 30 H 0.101 0.899 31 H 0.063 0.937 32 H 0.077 0.923 33 H 0.120 0.880 34 H 0.111 0.889 35 H 0.086 0.914 36 H 0.117 0.883 37 H 0.131 0.869 38 H 0.060 0.940 39 H 0.088 0.912 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.523 11.152 1.853 12.176 hybrid contribution -0.375 -0.850 -0.852 1.261 sum 4.147 10.302 1.000 11.151 Atomic orbital electron populations 1.20779 0.83624 1.05431 1.05157 1.21918 0.96052 0.84632 0.90481 1.22201 0.91416 1.00277 1.24010 1.19496 0.92319 0.82550 0.85008 1.68842 1.28113 1.06100 1.44589 1.21457 0.90194 0.86431 0.75047 1.90490 1.28444 1.79491 1.50142 1.20477 0.94077 0.91501 1.01364 0.89227 1.21524 0.99149 1.02322 0.94784 1.22015 1.05438 0.93407 0.95298 1.22660 0.94521 1.02939 1.00754 1.23155 0.95430 1.00109 1.00922 1.44514 0.98925 1.05042 1.70232 0.69939 1.47815 0.93306 1.08020 1.64035 1.19734 0.96259 0.70811 0.98222 1.21514 1.47455 0.98676 0.92455 0.92488 1.25572 0.94125 0.95884 1.01392 1.69958 1.44835 1.07266 1.32892 0.85468 0.78123 0.78264 0.79389 1.20295 1.20094 1.19418 0.88403 0.89700 0.86811 0.80776 0.89937 0.93743 0.92268 0.87968 0.88863 0.91415 0.88280 0.86853 0.93973 0.91200 0.91629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.46 10.09 71.24 0.72 -1.74 16 2 C 0.20 6.91 6.93 41.14 0.29 7.20 16 3 C -0.35 -13.51 9.41 22.23 0.21 -13.30 16 4 C 0.46 18.28 8.07 133.83 1.08 19.36 16 5 N -0.71 -28.66 10.31 -309.86 -3.19 -31.85 16 6 C 0.48 18.80 6.91 87.95 0.61 19.41 16 7 O -0.60 -25.84 11.98 -4.00 -0.05 -25.89 16 8 C -0.05 -1.59 2.95 -11.54 -0.03 -1.63 16 9 H 0.09 2.59 7.90 -2.39 -0.02 2.57 16 10 C -0.12 -3.07 9.08 71.98 0.65 -2.41 16 11 C -0.14 -3.82 4.73 -10.79 -0.05 -3.88 16 12 C -0.17 -4.69 8.97 30.60 0.27 -4.41 16 13 C -0.16 -3.32 10.18 30.60 0.31 -3.01 16 14 N -0.46 -17.16 7.37 -54.81 -0.40 -17.57 16 15 H 0.45 14.73 8.96 -213.28 -1.91 12.82 16 16 N -0.35 -13.15 3.63 -337.52 -1.23 -14.37 16 17 C 0.27 11.14 5.93 85.63 0.51 11.65 16 18 C -0.56 -26.42 9.39 25.60 0.24 -26.18 16 19 H 0.06 2.78 7.81 -2.91 -0.02 2.76 16 20 C 0.03 1.57 5.46 84.65 0.46 2.03 16 21 N -0.91 -45.47 13.29 21.45 0.28 -45.19 16 22 Si 0.96 38.62 29.54 68.60 2.03 40.64 16 23 H -0.28 -11.11 7.11 99.48 0.71 -10.40 16 24 H -0.28 -10.77 7.11 99.48 0.71 -10.06 16 25 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 26 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 27 H 0.08 2.22 7.14 -2.38 -0.02 2.20 16 28 H 0.11 2.40 8.14 -2.39 -0.02 2.39 16 29 H 0.18 7.12 5.77 -2.91 -0.02 7.10 16 30 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.06 1.60 8.05 -2.39 -0.02 1.59 16 33 H 0.10 2.67 8.11 -2.39 -0.02 2.65 16 34 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 35 H 0.07 2.14 8.10 -2.38 -0.02 2.13 16 36 H 0.10 1.90 8.05 -2.39 -0.02 1.88 16 37 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.04 1.84 8.14 -2.38 -0.02 1.82 16 39 H 0.07 2.91 7.18 -2.39 -0.02 2.89 16 40 H 0.27 13.00 8.31 -92.71 -0.77 12.23 16 Total: -1.00 -59.02 337.90 1.84 -57.18 By element: Atomic # 1 Polarization: 34.84 SS G_CDS: -0.87 Total: 33.97 kcal Atomic # 6 Polarization: -2.18 SS G_CDS: 5.27 Total: 3.08 kcal Atomic # 7 Polarization: -104.44 SS G_CDS: -4.54 Total: -108.98 kcal Atomic # 8 Polarization: -25.84 SS G_CDS: -0.05 Total: -25.89 kcal Atomic # 14 Polarization: 38.62 SS G_CDS: 2.03 Total: 40.64 kcal Total: -59.02 1.84 -57.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331935076.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.173 kcal (2) G-P(sol) polarization free energy of solvation -59.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.181 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds