Wall clock time and date at job start Mon Mar 30 2020 02:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39873 * 125.89712 * 2 1 4 4 C 1.35313 * 107.91628 * 180.02562 * 3 2 1 5 5 C 1.50698 * 126.12692 * 180.02562 * 4 3 2 6 6 N 1.34944 * 107.75072 * 359.97438 * 4 3 2 7 7 C 1.46496 * 126.03977 * 179.97438 * 6 4 3 8 8 H 1.08997 * 109.47404 * 0.02562 * 7 6 4 9 9 C 1.53006 * 109.47316 * 240.00089 * 7 6 4 10 10 C 1.50701 * 109.47301 * 120.00236 * 7 6 4 11 11 O 1.21290 * 120.00085 * 8.06432 * 10 7 6 12 12 N 1.34776 * 120.00532 * 188.06981 * 10 7 6 13 13 C 1.37094 * 120.00582 * 185.12189 * 12 10 7 14 14 H 1.08000 * 119.99332 * 324.98400 * 13 12 10 15 15 C 1.38946 * 120.00358 * 144.98769 * 13 12 10 16 16 N 1.31414 * 119.99749 * 3.99316 * 15 13 12 17 17 Si 1.86799 * 119.99988 * 183.98872 * 15 13 12 18 18 H 1.48498 * 109.47120 * 60.00349 * 17 15 13 19 19 H 1.48498 * 109.46976 * 179.97438 * 17 15 13 20 20 H 1.48492 * 109.47496 * 300.00126 * 17 15 13 21 21 C 1.46503 * 119.99521 * 5.11675 * 12 10 7 22 22 C 1.52999 * 117.49959 * 132.48523 * 21 12 10 23 23 C 1.53001 * 117.50135 * 63.82431 * 21 12 10 24 24 N 1.30838 * 125.90031 * 180.31075 * 2 1 3 25 25 H 1.08999 * 109.47626 * 89.99964 * 1 2 3 26 26 H 1.09005 * 109.47295 * 209.99786 * 1 2 3 27 27 H 1.09002 * 109.47370 * 329.99428 * 1 2 3 28 28 H 1.07989 * 126.03946 * 0.02562 * 3 2 1 29 29 H 1.09007 * 109.47326 * 269.97344 * 5 4 3 30 30 H 1.09001 * 109.47123 * 29.96472 * 5 4 3 31 31 H 1.08992 * 109.47879 * 149.96943 * 5 4 3 32 32 H 1.08998 * 109.46722 * 54.62029 * 9 7 6 33 33 H 1.08996 * 109.46713 * 294.61770 * 9 7 6 34 34 H 1.08996 * 109.47026 * 174.61771 * 9 7 6 35 35 H 0.97003 * 119.99168 * 185.00404 * 16 15 13 36 36 H 1.09001 * 115.55300 * 278.15233 * 21 12 10 37 37 H 1.09005 * 117.49692 * 359.97438 * 22 21 12 38 38 H 1.08991 * 117.50195 * 145.02197 * 22 21 12 39 39 H 1.08994 * 117.50297 * 214.97859 * 23 21 12 40 40 H 1.09002 * 117.49412 * 359.97438 * 23 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3271 1.1331 0.0000 4 6 3.6141 0.7154 -0.0006 5 6 4.8350 1.5988 -0.0002 6 7 3.6087 -0.6341 -0.0004 7 6 4.7898 -1.5007 -0.0013 8 1 5.6907 -0.8872 -0.0018 9 6 4.7732 -2.3842 -1.2505 10 6 4.7757 -2.3705 1.2293 11 8 3.8017 -2.3831 1.9519 12 7 5.8455 -3.1344 1.5270 13 6 5.7939 -4.0036 2.5859 14 1 5.2392 -3.7400 3.4743 15 6 6.4551 -5.2237 2.5161 16 7 7.1940 -5.5116 1.4682 17 14 6.2936 -6.4546 3.9118 18 1 4.8664 -6.8292 4.0789 19 1 7.0895 -7.6680 3.5963 20 1 6.7961 -5.8457 5.1695 21 6 7.0635 -3.0359 0.7189 22 6 8.3951 -2.9056 1.4610 23 6 7.8083 -1.6994 0.7236 24 7 2.2742 -1.0598 -0.0057 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3634 0.8899 0.5139 28 1 1.9923 2.1597 0.0004 29 1 5.1294 1.8122 -1.0279 30 1 4.6075 2.5328 0.5137 31 1 5.6511 1.0909 0.5135 32 1 4.6870 -1.7571 -2.1378 33 1 3.9233 -3.0649 -1.2026 34 1 5.6974 -2.9598 -1.3007 35 1 7.5966 -6.3902 1.3854 36 1 7.0588 -3.6061 -0.2101 37 1 8.3648 -2.8928 2.5506 38 1 9.2664 -3.3898 1.0202 39 1 8.2939 -1.3905 -0.2021 40 1 7.3918 -0.8933 1.3276 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331952758.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:10 Heat of formation + Delta-G solvation = 76.263163 kcal Electronic energy + Delta-G solvation = -22483.615587 eV Core-core repulsion = 19301.597015 eV Total energy + Delta-G solvation = -3182.018572 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.91616 -38.88406 -36.17640 -34.21643 -33.01747 -32.17848 -31.16554 -30.22097 -27.29925 -26.61505 -25.42595 -23.41866 -21.65599 -21.37395 -19.98604 -19.78088 -18.20919 -16.93952 -16.11376 -15.96610 -15.20539 -14.82312 -14.48881 -13.98138 -13.86689 -13.44869 -13.26186 -13.12035 -13.08637 -12.82686 -12.35459 -12.22572 -12.12775 -11.77933 -11.63203 -11.52397 -11.23035 -11.13992 -11.00927 -10.77927 -10.57402 -10.37952 -9.93526 -9.75673 -9.48962 -8.88982 -8.77037 -8.28845 -7.96550 -7.65659 -6.33936 -3.99841 2.34351 2.90795 3.19261 3.22224 3.23994 3.28518 3.75024 4.09973 4.58221 4.60832 4.90073 4.93295 5.08382 5.22885 5.33040 5.40193 5.51321 5.58377 5.59813 5.67280 5.81162 5.84950 5.90496 5.92630 5.98626 6.05256 6.12177 6.15081 6.18249 6.22932 6.46616 6.62839 6.70557 6.84937 7.09188 7.16788 7.48355 7.53620 8.14622 8.30380 8.45830 9.13831 9.31905 9.89667 10.72225 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022094 B = 0.005889 C = 0.005085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.033816 B = 4753.245699 C = 5505.191349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.048 3.952 3 C -0.278 4.278 4 C 0.074 3.926 5 C -0.091 4.091 6 N -0.338 5.338 7 C 0.144 3.856 8 H 0.113 0.887 9 C -0.150 4.150 10 C 0.457 3.543 11 O -0.551 6.551 12 N -0.421 5.421 13 C -0.310 4.310 14 H 0.091 0.909 15 C 0.046 3.954 16 N -0.873 5.873 17 Si 0.920 3.080 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.274 1.274 21 C 0.125 3.875 22 C -0.129 4.129 23 C -0.238 4.238 24 N -0.254 5.254 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.139 0.861 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.068 0.932 32 H 0.059 0.941 33 H 0.070 0.930 34 H 0.085 0.915 35 H 0.268 0.732 36 H 0.109 0.891 37 H 0.090 0.910 38 H 0.086 0.914 39 H 0.089 0.911 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.437 10.665 -6.442 12.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.118 4.118 3 C -0.308 4.308 4 C -0.054 4.054 5 C -0.150 4.150 6 N -0.120 5.120 7 C 0.038 3.962 8 H 0.131 0.869 9 C -0.208 4.208 10 C 0.242 3.758 11 O -0.432 6.432 12 N -0.142 5.142 13 C -0.437 4.437 14 H 0.108 0.892 15 C -0.159 4.159 16 N -0.511 5.511 17 Si 0.747 3.253 18 H -0.198 1.198 19 H -0.209 1.209 20 H -0.199 1.199 21 C 0.020 3.980 22 C -0.167 4.167 23 C -0.276 4.276 24 N -0.076 5.076 25 H 0.087 0.913 26 H 0.088 0.912 27 H 0.089 0.911 28 H 0.157 0.843 29 H 0.095 0.905 30 H 0.101 0.899 31 H 0.087 0.913 32 H 0.078 0.922 33 H 0.089 0.911 34 H 0.104 0.896 35 H 0.078 0.922 36 H 0.126 0.874 37 H 0.109 0.891 38 H 0.105 0.895 39 H 0.108 0.892 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.576 9.118 -6.092 10.982 hybrid contribution 0.216 0.111 0.680 0.722 sum -0.360 9.229 -5.412 10.705 Atomic orbital electron populations 1.20057 0.87382 1.02810 1.02129 1.22240 0.96709 0.91059 1.01804 1.20926 0.90968 0.99209 1.19705 1.21018 0.97171 0.84740 1.02433 1.20425 0.93461 0.98170 1.02896 1.48255 1.05071 1.03286 1.55359 1.21316 0.84530 0.92764 0.97612 0.86941 1.22006 1.04520 0.99751 0.94514 1.19968 0.83865 0.84941 0.86993 1.90608 1.33495 1.67910 1.51170 1.42935 1.08052 1.35760 1.27461 1.19367 1.32844 0.96413 0.95071 0.89177 1.25350 0.95424 0.97364 0.97719 1.69844 1.30737 1.21640 1.28832 0.86106 0.78619 0.79661 0.80962 1.19833 1.20912 1.19945 1.21284 0.85297 0.94517 0.96887 1.22635 0.96956 0.97607 0.99480 1.23653 1.07694 0.93280 1.02966 1.77451 0.86113 1.22076 1.22008 0.91255 0.91188 0.91071 0.84323 0.90457 0.89933 0.91268 0.92225 0.91060 0.89628 0.92192 0.87396 0.89123 0.89520 0.89248 0.89995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.87 10.45 36.00 0.38 -0.50 16 2 C 0.05 0.87 7.22 -82.40 -0.59 0.28 16 3 C -0.28 -4.52 10.65 -40.01 -0.43 -4.94 16 4 C 0.07 1.24 6.93 -82.27 -0.57 0.67 16 5 C -0.09 -1.09 9.95 36.00 0.36 -0.74 16 6 N -0.34 -6.77 3.00 -51.82 -0.16 -6.92 16 7 C 0.14 2.82 2.72 -69.08 -0.19 2.63 16 8 H 0.11 1.91 4.45 -51.93 -0.23 1.68 16 9 C -0.15 -2.66 9.27 37.16 0.34 -2.31 16 10 C 0.46 11.37 6.88 -10.98 -0.08 11.29 16 11 O -0.55 -16.13 15.62 5.55 0.09 -16.04 16 12 N -0.42 -10.49 2.91 -107.73 -0.31 -10.80 16 13 C -0.31 -8.50 8.61 -14.94 -0.13 -8.62 16 14 H 0.09 2.63 7.59 -52.49 -0.40 2.24 16 15 C 0.05 1.19 5.18 -17.47 -0.09 1.10 16 16 N -0.87 -22.21 10.62 55.50 0.59 -21.62 16 17 Si 0.92 20.79 29.56 -169.99 -5.02 15.77 16 18 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 19 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 20 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 21 C 0.13 2.62 2.55 -67.93 -0.17 2.45 16 22 C -0.13 -2.52 8.83 -26.69 -0.24 -2.75 16 23 C -0.24 -3.98 8.55 -26.69 -0.23 -4.21 16 24 N -0.25 -5.51 11.70 33.67 0.39 -5.12 16 25 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 27 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.14 1.80 8.06 -52.49 -0.42 1.37 16 29 H 0.08 0.76 8.14 -51.92 -0.42 0.34 16 30 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.07 0.84 7.09 -51.93 -0.37 0.48 16 32 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 34 H 0.09 1.45 5.69 -51.93 -0.30 1.15 16 35 H 0.27 6.56 8.32 -40.82 -0.34 6.22 16 36 H 0.11 2.29 6.61 -51.93 -0.34 1.95 16 37 H 0.09 1.94 7.98 -51.93 -0.41 1.53 16 38 H 0.09 1.58 8.14 -51.93 -0.42 1.15 16 39 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.08 1.38 7.86 -51.93 -0.41 0.98 16 LS Contribution 329.44 15.07 4.96 4.96 Total: -1.00 -32.97 329.44 -6.91 -39.89 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: -5.82 Total: 5.53 kcal Atomic # 6 Polarization: -4.02 SS G_CDS: -1.63 Total: -5.65 kcal Atomic # 7 Polarization: -44.98 SS G_CDS: 0.51 Total: -44.46 kcal Atomic # 8 Polarization: -16.13 SS G_CDS: 0.09 Total: -16.04 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.97 -6.91 -39.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331952758.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.151 kcal (2) G-P(sol) polarization free energy of solvation -32.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds