Wall clock time and date at job start Mon Mar 30 2020 02:18:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39873 * 125.89712 * 2 1 4 4 C 1.35313 * 107.91628 * 180.02562 * 3 2 1 5 5 C 1.50698 * 126.12692 * 180.02562 * 4 3 2 6 6 N 1.34944 * 107.75072 * 359.97438 * 4 3 2 7 7 C 1.46496 * 126.03977 * 179.97438 * 6 4 3 8 8 H 1.08997 * 109.47404 * 0.02562 * 7 6 4 9 9 C 1.53006 * 109.47316 * 240.00089 * 7 6 4 10 10 C 1.50701 * 109.47301 * 120.00236 * 7 6 4 11 11 O 1.21290 * 120.00085 * 8.06432 * 10 7 6 12 12 N 1.34776 * 120.00532 * 188.06981 * 10 7 6 13 13 C 1.37094 * 120.00582 * 185.12189 * 12 10 7 14 14 H 1.08000 * 119.99332 * 324.98400 * 13 12 10 15 15 C 1.38946 * 120.00358 * 144.98769 * 13 12 10 16 16 N 1.31414 * 119.99749 * 3.99316 * 15 13 12 17 17 Si 1.86799 * 119.99988 * 183.98872 * 15 13 12 18 18 H 1.48498 * 109.47120 * 60.00349 * 17 15 13 19 19 H 1.48498 * 109.46976 * 179.97438 * 17 15 13 20 20 H 1.48492 * 109.47496 * 300.00126 * 17 15 13 21 21 C 1.46503 * 119.99521 * 5.11675 * 12 10 7 22 22 C 1.52999 * 117.49959 * 132.48523 * 21 12 10 23 23 C 1.53001 * 117.50135 * 63.82431 * 21 12 10 24 24 N 1.30838 * 125.90031 * 180.31075 * 2 1 3 25 25 H 1.08999 * 109.47626 * 89.99964 * 1 2 3 26 26 H 1.09005 * 109.47295 * 209.99786 * 1 2 3 27 27 H 1.09002 * 109.47370 * 329.99428 * 1 2 3 28 28 H 1.07989 * 126.03946 * 0.02562 * 3 2 1 29 29 H 1.09007 * 109.47326 * 269.97344 * 5 4 3 30 30 H 1.09001 * 109.47123 * 29.96472 * 5 4 3 31 31 H 1.08992 * 109.47879 * 149.96943 * 5 4 3 32 32 H 1.08998 * 109.46722 * 54.62029 * 9 7 6 33 33 H 1.08996 * 109.46713 * 294.61770 * 9 7 6 34 34 H 1.08996 * 109.47026 * 174.61771 * 9 7 6 35 35 H 0.97003 * 119.99168 * 185.00404 * 16 15 13 36 36 H 1.09001 * 115.55300 * 278.15233 * 21 12 10 37 37 H 1.09005 * 117.49692 * 359.97438 * 22 21 12 38 38 H 1.08991 * 117.50195 * 145.02197 * 22 21 12 39 39 H 1.08994 * 117.50297 * 214.97859 * 23 21 12 40 40 H 1.09002 * 117.49412 * 359.97438 * 23 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3271 1.1331 0.0000 4 6 3.6141 0.7154 -0.0006 5 6 4.8350 1.5988 -0.0002 6 7 3.6087 -0.6341 -0.0004 7 6 4.7898 -1.5007 -0.0013 8 1 5.6907 -0.8872 -0.0018 9 6 4.7732 -2.3842 -1.2505 10 6 4.7757 -2.3705 1.2293 11 8 3.8017 -2.3831 1.9519 12 7 5.8455 -3.1344 1.5270 13 6 5.7939 -4.0036 2.5859 14 1 5.2392 -3.7400 3.4743 15 6 6.4551 -5.2237 2.5161 16 7 7.1940 -5.5116 1.4682 17 14 6.2936 -6.4546 3.9118 18 1 4.8664 -6.8292 4.0789 19 1 7.0895 -7.6680 3.5963 20 1 6.7961 -5.8457 5.1695 21 6 7.0635 -3.0359 0.7189 22 6 8.3951 -2.9056 1.4610 23 6 7.8083 -1.6994 0.7236 24 7 2.2742 -1.0598 -0.0057 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3634 0.8899 0.5139 28 1 1.9923 2.1597 0.0004 29 1 5.1294 1.8122 -1.0279 30 1 4.6075 2.5328 0.5137 31 1 5.6511 1.0909 0.5135 32 1 4.6870 -1.7571 -2.1378 33 1 3.9233 -3.0649 -1.2026 34 1 5.6974 -2.9598 -1.3007 35 1 7.5966 -6.3902 1.3854 36 1 7.0588 -3.6061 -0.2101 37 1 8.3648 -2.8928 2.5506 38 1 9.2664 -3.3898 1.0202 39 1 8.2939 -1.3905 -0.2021 40 1 7.3918 -0.8933 1.3276 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331952758.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:09 Heat of formation + Delta-G solvation = 55.310708 kcal Electronic energy + Delta-G solvation = -22484.524153 eV Core-core repulsion = 19301.597015 eV Total energy + Delta-G solvation = -3182.927138 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.26888 -40.64014 -37.93528 -35.73789 -34.84139 -33.48212 -32.95647 -31.53805 -28.54609 -27.77409 -27.34818 -25.02864 -23.11873 -23.03583 -21.39731 -21.27835 -19.66822 -18.80709 -17.75887 -17.53914 -16.97761 -16.27305 -16.13508 -15.76310 -15.34649 -14.90814 -14.71567 -14.46736 -14.08603 -14.03539 -13.81058 -13.56918 -13.48479 -13.21969 -13.08112 -12.93155 -12.86203 -12.74794 -12.54483 -12.44056 -12.22822 -12.16031 -11.49485 -11.23233 -11.14028 -10.72352 -10.43029 -9.83710 -9.59616 -9.31949 -8.32854 -6.06256 1.02911 1.34017 1.36836 1.44348 1.58537 1.90785 1.96423 2.24997 2.84277 2.96278 3.15193 3.61885 3.75278 3.83548 3.91544 4.06976 4.19120 4.24758 4.36125 4.49989 4.56864 4.60632 4.67375 4.75948 4.81323 4.83453 4.84899 4.96718 5.03783 5.08033 5.10158 5.17775 5.38111 5.41573 5.42765 5.48394 5.90389 6.08950 6.23745 6.53640 6.98049 7.15214 7.38763 7.97541 8.69723 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022094 B = 0.005889 C = 0.005085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.033816 B = 4753.245699 C = 5505.191349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.040 3.960 3 C -0.285 4.285 4 C 0.069 3.931 5 C -0.090 4.090 6 N -0.359 5.359 7 C 0.157 3.843 8 H 0.143 0.857 9 C -0.140 4.140 10 C 0.440 3.560 11 O -0.612 6.612 12 N -0.427 5.427 13 C -0.346 4.346 14 H 0.054 0.946 15 C 0.021 3.979 16 N -0.872 5.872 17 Si 0.972 3.028 18 H -0.287 1.287 19 H -0.265 1.265 20 H -0.270 1.270 21 C 0.097 3.903 22 C -0.138 4.138 23 C -0.191 4.191 24 N -0.324 5.324 25 H 0.090 0.910 26 H 0.054 0.946 27 H 0.098 0.902 28 H 0.174 0.826 29 H 0.106 0.894 30 H 0.105 0.895 31 H 0.066 0.934 32 H 0.090 0.910 33 H 0.037 0.963 34 H 0.093 0.907 35 H 0.273 0.727 36 H 0.106 0.894 37 H 0.063 0.937 38 H 0.101 0.899 39 H 0.137 0.863 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.072 12.700 -8.037 15.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.127 4.127 3 C -0.314 4.314 4 C -0.058 4.058 5 C -0.148 4.148 6 N -0.142 5.142 7 C 0.051 3.949 8 H 0.161 0.839 9 C -0.198 4.198 10 C 0.228 3.772 11 O -0.497 6.497 12 N -0.146 5.146 13 C -0.474 4.474 14 H 0.072 0.928 15 C -0.183 4.183 16 N -0.509 5.509 17 Si 0.796 3.204 18 H -0.214 1.214 19 H -0.189 1.189 20 H -0.195 1.195 21 C -0.007 4.007 22 C -0.175 4.175 23 C -0.229 4.229 24 N -0.146 5.146 25 H 0.109 0.891 26 H 0.074 0.926 27 H 0.117 0.883 28 H 0.191 0.809 29 H 0.125 0.875 30 H 0.124 0.876 31 H 0.085 0.915 32 H 0.109 0.891 33 H 0.056 0.944 34 H 0.112 0.888 35 H 0.083 0.917 36 H 0.123 0.877 37 H 0.081 0.919 38 H 0.119 0.881 39 H 0.155 0.845 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 0.980 11.162 -7.717 13.605 hybrid contribution -0.281 -0.497 1.188 1.318 sum 0.699 10.665 -6.529 12.524 Atomic orbital electron populations 1.20210 0.84878 1.03419 1.03692 1.23044 0.98533 0.91125 0.99960 1.21399 0.90580 1.00275 1.19175 1.21936 0.99373 0.83911 1.00593 1.20635 0.91166 0.97940 1.05075 1.48317 1.04502 1.04454 1.56881 1.21180 0.85981 0.92635 0.95063 0.83932 1.21945 1.03376 0.99475 0.94989 1.20949 0.82930 0.85293 0.87995 1.90551 1.35586 1.70078 1.53495 1.43114 1.09615 1.34992 1.26929 1.19200 1.34157 0.98517 0.95509 0.92760 1.25869 0.94723 0.97958 0.99797 1.69892 1.29833 1.21950 1.29192 0.85345 0.77806 0.78281 0.78959 1.21351 1.18874 1.19455 1.21354 0.84299 0.98552 0.96541 1.22594 0.96676 1.00138 0.98108 1.23733 1.04053 0.91151 1.03975 1.77382 0.87543 1.24610 1.25054 0.89123 0.92646 0.88312 0.80902 0.87527 0.87627 0.91494 0.89083 0.94419 0.88824 0.91698 0.87675 0.91858 0.88068 0.84508 0.89871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.65 10.45 71.24 0.74 -0.91 16 2 C 0.04 1.42 7.22 43.10 0.31 1.73 16 3 C -0.29 -8.68 10.65 21.99 0.23 -8.45 16 4 C 0.07 2.17 6.93 41.40 0.29 2.46 16 5 C -0.09 -1.82 9.95 71.24 0.71 -1.11 16 6 N -0.36 -14.32 3.00 -317.85 -0.95 -15.27 16 7 C 0.16 6.12 2.72 44.25 0.12 6.24 16 8 H 0.14 4.51 4.45 -2.39 -0.01 4.50 16 9 C -0.14 -4.89 9.27 71.98 0.67 -4.23 16 10 C 0.44 22.76 6.88 87.66 0.60 23.36 16 11 O -0.61 -38.09 15.62 -3.06 -0.05 -38.13 16 12 N -0.43 -21.90 2.91 -613.13 -1.78 -23.69 16 13 C -0.35 -19.90 8.61 84.04 0.72 -19.18 16 14 H 0.05 3.43 7.59 -2.91 -0.02 3.41 16 15 C 0.02 1.11 5.18 84.93 0.44 1.55 16 16 N -0.87 -44.32 10.62 21.66 0.23 -44.09 16 17 Si 0.97 43.40 29.56 68.60 2.03 45.42 16 18 H -0.29 -13.45 7.11 99.48 0.71 -12.75 16 19 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 20 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 21 C 0.10 3.97 2.55 44.99 0.11 4.08 16 22 C -0.14 -5.19 8.83 30.62 0.27 -4.92 16 23 C -0.19 -5.80 8.55 30.62 0.26 -5.54 16 24 N -0.32 -14.41 11.70 -47.38 -0.55 -14.96 16 25 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 26 H 0.05 1.58 8.14 -2.38 -0.02 1.56 16 27 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 28 H 0.17 3.85 8.06 -2.92 -0.02 3.83 16 29 H 0.11 1.56 8.14 -2.38 -0.02 1.54 16 30 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.07 1.39 7.09 -2.39 -0.02 1.37 16 32 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 33 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.09 3.06 5.69 -2.39 -0.01 3.05 16 35 H 0.27 13.14 8.32 -92.71 -0.77 12.37 16 36 H 0.11 4.35 6.61 -2.39 -0.02 4.33 16 37 H 0.06 2.73 7.98 -2.38 -0.02 2.71 16 38 H 0.10 3.47 8.14 -2.39 -0.02 3.45 16 39 H 0.14 2.94 8.14 -2.39 -0.02 2.92 16 40 H 0.08 2.55 7.86 -2.39 -0.02 2.54 16 Total: -1.00 -77.94 329.44 5.44 -72.50 By element: Atomic # 1 Polarization: 22.09 SS G_CDS: 1.03 Total: 23.13 kcal Atomic # 6 Polarization: -10.39 SS G_CDS: 5.49 Total: -4.91 kcal Atomic # 7 Polarization: -94.95 SS G_CDS: -3.06 Total: -98.01 kcal Atomic # 8 Polarization: -38.09 SS G_CDS: -0.05 Total: -38.13 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.42 kcal Total: -77.94 5.44 -72.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331952758.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.809 kcal (2) G-P(sol) polarization free energy of solvation -77.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds