Wall clock time and date at job start Mon Mar 30 2020 01:50:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38277 * 119.53796 * 2 1 4 4 C 1.38509 * 119.23204 * 179.97438 * 3 2 1 5 5 C 1.50700 * 120.81859 * 179.97438 * 4 3 2 6 6 C 1.39273 * 118.36175 * 0.02562 * 4 3 2 7 7 N 1.39977 * 120.48726 * 180.02562 * 6 4 3 8 8 C 1.34774 * 119.99762 * 302.69343 * 7 6 4 9 9 O 1.21592 * 119.99870 * 2.66119 * 8 7 6 10 10 N 1.34775 * 120.00298 * 182.65836 * 8 7 6 11 11 C 1.46497 * 120.00185 * 179.97438 * 10 8 7 12 12 H 1.08996 * 109.47156 * 35.00781 * 11 10 8 13 13 C 1.53003 * 109.47246 * 275.00169 * 11 10 8 14 14 C 1.50700 * 109.47040 * 155.00548 * 11 10 8 15 15 H 1.08007 * 120.00090 * 5.28624 * 14 11 10 16 16 C 1.37879 * 120.00435 * 185.29042 * 14 11 10 17 17 N 1.31510 * 120.00656 * 185.21284 * 16 14 11 18 18 Si 1.86803 * 119.99623 * 5.48931 * 16 14 11 19 19 H 1.48497 * 109.47168 * 269.72862 * 18 16 14 20 20 H 1.48506 * 109.47057 * 29.72634 * 18 16 14 21 21 H 1.48502 * 109.47045 * 149.72047 * 18 16 14 22 22 C 1.38838 * 119.02537 * 0.27401 * 6 4 3 23 23 C 1.50706 * 119.66496 * 179.70700 * 22 6 4 24 24 N 1.31823 * 120.66334 * 359.42635 * 22 6 4 25 25 H 1.08996 * 109.46833 * 90.00002 * 1 2 3 26 26 H 1.08998 * 109.46961 * 210.00317 * 1 2 3 27 27 H 1.09003 * 109.47236 * 329.99843 * 1 2 3 28 28 H 1.07992 * 120.38277 * 359.95584 * 3 2 1 29 29 H 1.08998 * 109.46876 * 276.08569 * 5 4 3 30 30 H 1.09006 * 109.47115 * 36.08606 * 5 4 3 31 31 H 1.08999 * 109.47055 * 156.08239 * 5 4 3 32 32 H 0.96991 * 120.00305 * 122.69238 * 7 6 4 33 33 H 0.97001 * 119.99559 * 0.02562 * 10 8 7 34 34 H 1.09001 * 109.46910 * 54.93607 * 13 11 10 35 35 H 1.09001 * 109.46741 * 174.93133 * 13 11 10 36 36 H 1.08998 * 109.47300 * 294.93108 * 13 11 10 37 37 H 0.97007 * 119.99746 * 355.26450 * 17 16 14 38 38 H 1.08997 * 109.47132 * 94.85762 * 23 22 6 39 39 H 1.08999 * 109.46595 * 214.85007 * 23 22 6 40 40 H 1.08996 * 109.47142 * 334.85494 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1887 1.2031 0.0000 4 6 3.5738 1.1957 0.0005 5 6 4.3528 2.4857 0.0000 6 6 4.2288 -0.0334 0.0005 7 7 5.6274 -0.0928 0.0016 8 6 6.3281 0.5089 -0.9799 9 8 5.7481 1.1441 -1.8393 10 7 7.6716 0.4067 -1.0087 11 6 8.4333 1.0603 -2.0759 12 1 7.9500 1.9998 -2.3442 13 6 8.4839 0.1448 -3.3007 14 6 9.8352 1.3356 -1.5964 15 1 10.1554 0.9766 -0.6294 16 6 10.7090 2.0459 -2.3920 17 7 11.9612 2.1983 -2.0203 18 14 10.1123 2.7982 -3.9943 19 1 10.2988 1.8232 -5.0987 20 1 8.6722 3.1407 -3.8742 21 1 10.8912 4.0290 -4.2835 22 6 3.4744 -1.1989 -0.0058 23 6 4.1683 -2.5366 -0.0127 24 7 2.1572 -1.1470 -0.0004 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3633 -0.8899 0.5139 27 1 -0.3634 0.8900 0.5139 28 1 1.6475 2.1375 -0.0007 29 1 4.4477 2.8523 -1.0221 30 1 3.8294 3.2265 0.6046 31 1 5.3446 2.3114 0.4171 32 1 6.0921 -0.5669 0.7086 33 1 8.1342 -0.1003 -0.3233 34 1 7.4696 -0.1271 -3.5932 35 1 8.9720 0.6662 -4.1241 36 1 9.0460 -0.7569 -3.0574 37 1 12.2537 1.8709 -1.1552 38 1 4.2580 -2.9046 1.0094 39 1 3.5871 -3.2443 -0.6038 40 1 5.1615 -2.4285 -0.4484 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334704663.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:24 Heat of formation + Delta-G solvation = -5.770961 kcal Electronic energy + Delta-G solvation = -21709.338665 eV Core-core repulsion = 18523.762827 eV Total energy + Delta-G solvation = -3185.575838 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.93012 -39.20676 -35.76921 -34.63054 -33.97345 -32.71265 -31.95981 -29.61317 -28.94546 -27.56589 -26.19042 -24.82919 -22.25000 -21.47157 -20.58844 -19.87910 -18.63222 -17.62133 -16.94074 -16.76242 -15.11298 -14.91024 -14.85359 -14.46616 -14.01250 -13.70671 -13.35854 -13.27092 -13.10353 -12.89884 -12.71354 -12.62503 -12.24333 -12.21633 -12.12035 -11.81139 -11.72662 -11.52904 -11.48317 -10.56489 -10.15215 -10.04315 -9.83086 -9.73963 -9.34245 -9.15998 -8.89733 -8.59238 -8.39830 -8.05509 -6.58899 -4.27131 1.05289 1.30642 3.05748 3.34221 3.43761 3.57094 3.57474 3.76220 4.18052 4.38527 4.61068 4.68503 4.76935 5.05295 5.18695 5.27436 5.39477 5.44936 5.45743 5.50177 5.53233 5.60870 5.76944 5.85217 5.99264 6.12602 6.24211 6.32249 6.37908 6.44116 6.50455 6.59992 6.79522 6.94777 7.06812 7.33250 7.42866 7.71765 8.00946 8.20016 8.58186 8.69842 9.10040 9.43890 10.81938 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.031398 B = 0.004244 C = 0.004044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.567931 B = 6595.437867 C = 6921.576023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.118 3.882 3 C -0.171 4.171 4 C -0.022 4.022 5 C -0.107 4.107 6 C 0.112 3.888 7 N -0.696 5.696 8 C 0.695 3.305 9 O -0.584 6.584 10 N -0.714 5.714 11 C 0.253 3.747 12 H 0.049 0.951 13 C -0.159 4.159 14 C -0.609 4.609 15 H 0.062 0.938 16 C 0.036 3.964 17 N -0.905 5.905 18 Si 1.051 2.949 19 H -0.281 1.281 20 H -0.274 1.274 21 H -0.288 1.288 22 C 0.122 3.878 23 C -0.102 4.102 24 N -0.481 5.481 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.134 0.866 29 H 0.091 0.909 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.402 0.598 33 H 0.390 0.610 34 H 0.033 0.967 35 H 0.050 0.950 36 H 0.049 0.951 37 H 0.268 0.732 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.189 -5.220 6.396 19.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.020 4.020 3 C -0.191 4.191 4 C -0.031 4.031 5 C -0.164 4.164 6 C 0.015 3.985 7 N -0.348 5.348 8 C 0.396 3.604 9 O -0.461 6.461 10 N -0.365 5.365 11 C 0.150 3.850 12 H 0.066 0.934 13 C -0.218 4.218 14 C -0.647 4.647 15 H 0.080 0.920 16 C -0.170 4.170 17 N -0.539 5.539 18 Si 0.879 3.121 19 H -0.208 1.208 20 H -0.199 1.199 21 H -0.214 1.214 22 C -0.018 4.018 23 C -0.159 4.159 24 N -0.192 5.192 25 H 0.094 0.906 26 H 0.093 0.907 27 H 0.091 0.909 28 H 0.151 0.849 29 H 0.110 0.890 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.238 0.762 33 H 0.222 0.778 34 H 0.052 0.948 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.078 0.922 38 H 0.094 0.906 39 H 0.096 0.904 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -18.565 -4.535 4.224 19.572 hybrid contribution 0.574 -0.596 2.039 2.200 sum -17.991 -5.131 6.263 19.729 Atomic orbital electron populations 1.20650 0.88920 1.03121 1.02919 1.21148 0.96793 0.88160 0.95874 1.21704 0.93481 0.99241 1.04712 1.20444 0.93682 0.95411 0.93609 1.20802 0.99197 0.92678 1.03701 1.17983 0.83364 0.93075 1.04079 1.42557 1.03573 1.59708 1.28965 1.16143 0.82617 0.80100 0.81584 1.90886 1.69379 1.45863 1.40004 1.45530 1.03186 1.56036 1.31789 1.19114 0.91282 0.91453 0.83198 0.93371 1.22421 0.99012 1.00913 0.99450 1.22162 0.96155 1.39915 1.06499 0.92009 1.25694 0.93433 0.94256 1.03588 1.70837 1.15231 1.45605 1.22179 0.83922 0.76014 0.76846 0.75279 1.20791 1.19949 1.21408 1.21283 0.89207 0.94835 0.96478 1.20649 1.00078 0.92327 1.02850 1.67291 1.08382 1.29271 1.14291 0.90605 0.90693 0.90897 0.84854 0.89023 0.91981 0.91538 0.76183 0.77764 0.94783 0.93151 0.93175 0.92154 0.90567 0.90392 0.90643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.87 10.17 36.01 0.37 -0.50 16 2 C 0.12 1.50 6.78 -82.57 -0.56 0.94 16 3 C -0.17 -2.19 9.46 -39.47 -0.37 -2.56 16 4 C -0.02 -0.32 5.52 -104.14 -0.58 -0.90 16 5 C -0.11 -1.59 8.35 36.01 0.30 -1.29 16 6 C 0.11 1.69 5.78 -83.53 -0.48 1.20 16 7 N -0.70 -10.21 3.72 -14.12 -0.05 -10.26 16 8 C 0.69 13.12 7.10 -86.92 -0.62 12.50 16 9 O -0.58 -13.05 13.30 5.28 0.07 -12.98 16 10 N -0.71 -13.99 5.07 -59.81 -0.30 -14.30 16 11 C 0.25 5.98 2.14 -69.08 -0.15 5.83 16 12 H 0.05 1.25 6.07 -51.93 -0.32 0.94 16 13 C -0.16 -3.55 9.07 37.16 0.34 -3.21 16 14 C -0.61 -16.20 9.09 -34.44 -0.31 -16.52 16 15 H 0.06 1.71 7.95 -52.48 -0.42 1.29 16 16 C 0.04 1.01 5.43 -17.82 -0.10 0.91 16 17 N -0.90 -26.85 13.70 55.43 0.76 -26.09 16 18 Si 1.05 25.24 25.30 -169.99 -4.30 20.94 16 19 H -0.28 -6.42 6.82 56.52 0.39 -6.03 16 20 H -0.27 -6.38 6.35 56.52 0.36 -6.02 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 22 C 0.12 1.72 6.80 -82.37 -0.56 1.16 16 23 C -0.10 -1.13 10.00 36.01 0.36 -0.77 16 24 N -0.48 -6.84 10.18 -5.59 -0.06 -6.90 16 25 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.07 0.49 8.08 -51.93 -0.42 0.07 16 28 H 0.13 1.35 8.06 -52.49 -0.42 0.92 16 29 H 0.09 1.55 7.19 -51.93 -0.37 1.18 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.07 1.07 6.62 -51.93 -0.34 0.73 16 32 H 0.40 4.61 8.82 -40.82 -0.36 4.25 16 33 H 0.39 6.68 8.54 -40.82 -0.35 6.33 16 34 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.05 1.13 4.42 -51.93 -0.23 0.90 16 36 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 37 H 0.27 7.86 8.72 -40.82 -0.36 7.51 16 38 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.07 0.85 7.30 -51.93 -0.38 0.47 16 LS Contribution 325.98 15.07 4.91 4.91 Total: -1.00 -32.36 325.98 -7.11 -39.47 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: -5.78 Total: 8.41 kcal Atomic # 6 Polarization: -0.85 SS G_CDS: -2.36 Total: -3.21 kcal Atomic # 7 Polarization: -57.89 SS G_CDS: 0.35 Total: -57.55 kcal Atomic # 8 Polarization: -13.05 SS G_CDS: 0.07 Total: -12.98 kcal Atomic # 14 Polarization: 25.24 SS G_CDS: -4.30 Total: 20.94 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -32.36 -7.11 -39.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334704663.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.697 kcal (2) G-P(sol) polarization free energy of solvation -32.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds