Wall clock time and date at job start Mon Mar 30 2020 01:50:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38277 * 119.53796 * 2 1 4 4 C 1.38509 * 119.23204 * 179.97438 * 3 2 1 5 5 C 1.50700 * 120.81859 * 179.97438 * 4 3 2 6 6 C 1.39273 * 118.36175 * 0.02562 * 4 3 2 7 7 N 1.39977 * 120.48726 * 180.02562 * 6 4 3 8 8 C 1.34774 * 119.99762 * 302.69343 * 7 6 4 9 9 O 1.21592 * 119.99870 * 2.66119 * 8 7 6 10 10 N 1.34775 * 120.00298 * 182.65836 * 8 7 6 11 11 C 1.46497 * 120.00185 * 179.97438 * 10 8 7 12 12 H 1.08996 * 109.47156 * 35.00781 * 11 10 8 13 13 C 1.53003 * 109.47246 * 275.00169 * 11 10 8 14 14 C 1.50700 * 109.47040 * 155.00548 * 11 10 8 15 15 H 1.08007 * 120.00090 * 5.28624 * 14 11 10 16 16 C 1.37879 * 120.00435 * 185.29042 * 14 11 10 17 17 N 1.31510 * 120.00656 * 185.21284 * 16 14 11 18 18 Si 1.86803 * 119.99623 * 5.48931 * 16 14 11 19 19 H 1.48497 * 109.47168 * 269.72862 * 18 16 14 20 20 H 1.48506 * 109.47057 * 29.72634 * 18 16 14 21 21 H 1.48502 * 109.47045 * 149.72047 * 18 16 14 22 22 C 1.38838 * 119.02537 * 0.27401 * 6 4 3 23 23 C 1.50706 * 119.66496 * 179.70700 * 22 6 4 24 24 N 1.31823 * 120.66334 * 359.42635 * 22 6 4 25 25 H 1.08996 * 109.46833 * 90.00002 * 1 2 3 26 26 H 1.08998 * 109.46961 * 210.00317 * 1 2 3 27 27 H 1.09003 * 109.47236 * 329.99843 * 1 2 3 28 28 H 1.07992 * 120.38277 * 359.95584 * 3 2 1 29 29 H 1.08998 * 109.46876 * 276.08569 * 5 4 3 30 30 H 1.09006 * 109.47115 * 36.08606 * 5 4 3 31 31 H 1.08999 * 109.47055 * 156.08239 * 5 4 3 32 32 H 0.96991 * 120.00305 * 122.69238 * 7 6 4 33 33 H 0.97001 * 119.99559 * 0.02562 * 10 8 7 34 34 H 1.09001 * 109.46910 * 54.93607 * 13 11 10 35 35 H 1.09001 * 109.46741 * 174.93133 * 13 11 10 36 36 H 1.08998 * 109.47300 * 294.93108 * 13 11 10 37 37 H 0.97007 * 119.99746 * 355.26450 * 17 16 14 38 38 H 1.08997 * 109.47132 * 94.85762 * 23 22 6 39 39 H 1.08999 * 109.46595 * 214.85007 * 23 22 6 40 40 H 1.08996 * 109.47142 * 334.85494 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1887 1.2031 0.0000 4 6 3.5738 1.1957 0.0005 5 6 4.3528 2.4857 0.0000 6 6 4.2288 -0.0334 0.0005 7 7 5.6274 -0.0928 0.0016 8 6 6.3281 0.5089 -0.9799 9 8 5.7481 1.1441 -1.8393 10 7 7.6716 0.4067 -1.0087 11 6 8.4333 1.0603 -2.0759 12 1 7.9500 1.9998 -2.3442 13 6 8.4839 0.1448 -3.3007 14 6 9.8352 1.3356 -1.5964 15 1 10.1554 0.9766 -0.6294 16 6 10.7090 2.0459 -2.3920 17 7 11.9612 2.1983 -2.0203 18 14 10.1123 2.7982 -3.9943 19 1 10.2988 1.8232 -5.0987 20 1 8.6722 3.1407 -3.8742 21 1 10.8912 4.0290 -4.2835 22 6 3.4744 -1.1989 -0.0058 23 6 4.1683 -2.5366 -0.0127 24 7 2.1572 -1.1470 -0.0004 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3633 -0.8899 0.5139 27 1 -0.3634 0.8900 0.5139 28 1 1.6475 2.1375 -0.0007 29 1 4.4477 2.8523 -1.0221 30 1 3.8294 3.2265 0.6046 31 1 5.3446 2.3114 0.4171 32 1 6.0921 -0.5669 0.7086 33 1 8.1342 -0.1003 -0.3233 34 1 7.4696 -0.1271 -3.5932 35 1 8.9720 0.6662 -4.1241 36 1 9.0460 -0.7569 -3.0574 37 1 12.2537 1.8709 -1.1552 38 1 4.2580 -2.9046 1.0094 39 1 3.5871 -3.2443 -0.6038 40 1 5.1615 -2.4285 -0.4484 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334704663.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:23 Heat of formation + Delta-G solvation = -28.400858 kcal Electronic energy + Delta-G solvation = -21710.319971 eV Core-core repulsion = 18523.762827 eV Total energy + Delta-G solvation = -3186.557144 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.10343 -40.57064 -37.30531 -36.13234 -35.06437 -34.50632 -33.29978 -31.26070 -29.86636 -28.66019 -27.26435 -26.80458 -23.64463 -22.56913 -21.99069 -21.41245 -20.29781 -19.24737 -18.38430 -17.93957 -16.75609 -16.16582 -15.88491 -15.80478 -15.57621 -15.05534 -14.77691 -14.46996 -14.37034 -14.19514 -14.08607 -13.86229 -13.73521 -13.52724 -13.34164 -13.12177 -12.92660 -12.64869 -12.57568 -12.47047 -11.97846 -11.70287 -11.36236 -11.26038 -10.95058 -10.70482 -10.45764 -10.27816 -9.92598 -9.29534 -8.78799 -6.47923 0.01451 0.23243 1.42226 1.51758 1.68807 1.70581 2.12946 2.40176 2.68540 3.03870 3.23175 3.37130 3.62702 3.70667 4.09856 4.25208 4.39461 4.47826 4.55288 4.59201 4.64114 4.66559 4.69210 4.72319 4.74880 4.83960 4.96421 5.00362 5.13304 5.13804 5.21643 5.28676 5.37932 5.44236 5.56637 5.61009 5.86491 5.97668 6.07229 6.50858 6.98896 7.12037 7.27975 7.60973 8.61044 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.031398 B = 0.004244 C = 0.004044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.567931 B = 6595.437867 C = 6921.576023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.115 3.885 3 C -0.172 4.172 4 C -0.041 4.041 5 C -0.100 4.100 6 C 0.084 3.916 7 N -0.675 5.675 8 C 0.699 3.301 9 O -0.618 6.618 10 N -0.714 5.714 11 C 0.259 3.741 12 H 0.027 0.973 13 C -0.152 4.152 14 C -0.602 4.602 15 H 0.043 0.957 16 C -0.009 4.009 17 N -0.935 5.935 18 Si 1.081 2.919 19 H -0.259 1.259 20 H -0.266 1.266 21 H -0.287 1.287 22 C 0.117 3.883 23 C -0.099 4.099 24 N -0.497 5.497 25 H 0.085 0.915 26 H 0.078 0.922 27 H 0.097 0.903 28 H 0.161 0.839 29 H 0.066 0.934 30 H 0.090 0.910 31 H 0.047 0.953 32 H 0.418 0.582 33 H 0.402 0.598 34 H 0.041 0.959 35 H 0.048 0.952 36 H 0.056 0.944 37 H 0.258 0.742 38 H 0.098 0.902 39 H 0.080 0.920 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.483 -5.846 6.458 22.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.023 4.023 3 C -0.192 4.192 4 C -0.050 4.050 5 C -0.156 4.156 6 C -0.012 4.012 7 N -0.328 5.328 8 C 0.400 3.600 9 O -0.498 6.498 10 N -0.366 5.366 11 C 0.154 3.846 12 H 0.044 0.956 13 C -0.211 4.211 14 C -0.640 4.640 15 H 0.061 0.939 16 C -0.209 4.209 17 N -0.571 5.571 18 Si 0.904 3.096 19 H -0.184 1.184 20 H -0.191 1.191 21 H -0.213 1.213 22 C -0.023 4.023 23 C -0.156 4.156 24 N -0.209 5.209 25 H 0.103 0.897 26 H 0.097 0.903 27 H 0.116 0.884 28 H 0.179 0.821 29 H 0.085 0.915 30 H 0.108 0.892 31 H 0.066 0.934 32 H 0.256 0.744 33 H 0.236 0.764 34 H 0.060 0.940 35 H 0.067 0.933 36 H 0.075 0.925 37 H 0.067 0.933 38 H 0.116 0.884 39 H 0.099 0.901 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -20.879 -5.212 4.342 21.953 hybrid contribution 1.164 -0.429 2.134 2.468 sum -19.715 -5.640 6.475 21.504 Atomic orbital electron populations 1.20764 0.86099 1.04582 1.03901 1.21829 0.98692 0.87710 0.94068 1.22011 0.92716 1.00647 1.03855 1.20654 0.94864 0.95194 0.94324 1.20684 0.98749 0.93710 1.02472 1.18193 0.83088 0.93859 1.06059 1.42186 1.03674 1.58744 1.28162 1.16123 0.82144 0.79846 0.81886 1.90864 1.69928 1.47353 1.41658 1.45205 1.03628 1.56238 1.31548 1.18763 0.89638 0.91474 0.84718 0.95551 1.22303 0.99599 1.00686 0.98493 1.22330 0.97583 1.38647 1.05468 0.93897 1.26816 0.93171 0.94588 1.06300 1.70935 1.16528 1.47533 1.22123 0.83531 0.75982 0.76827 0.73222 1.18406 1.19114 1.21348 1.21658 0.89431 0.95535 0.95656 1.20703 0.99570 0.91069 1.04288 1.67413 1.08355 1.30112 1.14994 0.89672 0.90304 0.88432 0.82136 0.91513 0.89180 0.93409 0.74350 0.76371 0.93994 0.93316 0.92450 0.93282 0.88366 0.90066 0.90890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.39 10.17 71.24 0.72 -0.67 16 2 C 0.11 2.64 6.78 42.57 0.29 2.93 16 3 C -0.17 -4.03 9.46 22.34 0.21 -3.82 16 4 C -0.04 -1.17 5.52 -19.55 -0.11 -1.28 16 5 C -0.10 -2.91 8.35 71.24 0.60 -2.32 16 6 C 0.08 2.46 5.78 38.23 0.22 2.68 16 7 N -0.67 -19.27 3.72 -316.86 -1.18 -20.44 16 8 C 0.70 26.12 7.10 179.06 1.27 27.39 16 9 O -0.62 -27.63 13.30 -4.01 -0.05 -27.69 16 10 N -0.71 -27.66 5.07 -461.42 -2.34 -30.01 16 11 C 0.26 12.15 2.14 44.25 0.09 12.25 16 12 H 0.03 1.38 6.07 -2.39 -0.01 1.36 16 13 C -0.15 -6.58 9.07 71.98 0.65 -5.93 16 14 C -0.60 -32.22 9.09 25.60 0.23 -31.99 16 15 H 0.04 2.41 7.95 -2.91 -0.02 2.39 16 16 C -0.01 -0.50 5.43 84.66 0.46 -0.04 16 17 N -0.94 -56.29 13.70 21.45 0.29 -56.00 16 18 Si 1.08 50.43 25.30 68.60 1.74 52.17 16 19 H -0.26 -11.10 6.82 99.48 0.68 -10.42 16 20 H -0.27 -12.01 6.35 99.48 0.63 -11.38 16 21 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 22 C 0.12 3.12 6.80 42.71 0.29 3.41 16 23 C -0.10 -2.03 10.00 71.24 0.71 -1.31 16 24 N -0.50 -13.21 10.18 -171.59 -1.75 -14.95 16 25 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.10 0.94 8.08 -2.39 -0.02 0.92 16 28 H 0.16 2.74 8.06 -2.91 -0.02 2.72 16 29 H 0.07 2.29 7.19 -2.39 -0.02 2.27 16 30 H 0.09 2.02 8.14 -2.38 -0.02 2.00 16 31 H 0.05 1.54 6.62 -2.39 -0.02 1.52 16 32 H 0.42 9.10 8.82 -92.72 -0.82 8.28 16 33 H 0.40 13.53 8.54 -92.71 -0.79 12.73 16 34 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.05 2.10 4.42 -2.39 -0.01 2.09 16 36 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 37 H 0.26 15.52 8.72 -92.70 -0.81 14.71 16 38 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.07 1.51 7.30 -2.39 -0.02 1.50 16 Total: -1.00 -69.84 325.98 1.68 -68.16 By element: Atomic # 1 Polarization: 28.14 SS G_CDS: -0.68 Total: 27.46 kcal Atomic # 6 Polarization: -4.35 SS G_CDS: 5.65 Total: 1.30 kcal Atomic # 7 Polarization: -116.43 SS G_CDS: -4.97 Total: -121.40 kcal Atomic # 8 Polarization: -27.63 SS G_CDS: -0.05 Total: -27.69 kcal Atomic # 14 Polarization: 50.43 SS G_CDS: 1.74 Total: 52.17 kcal Total: -69.84 1.68 -68.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334704663.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.759 kcal (2) G-P(sol) polarization free energy of solvation -69.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds