Wall clock time and date at job start Mon Mar 30 2020 01:50:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38265 * 119.54404 * 2 1 4 4 C 1.38508 * 119.23744 * 179.97438 * 3 2 1 5 5 C 1.50701 * 120.81976 * 179.97438 * 4 3 2 6 6 C 1.39270 * 118.36252 * 0.02562 * 4 3 2 7 7 N 1.39975 * 120.48958 * 179.72752 * 6 4 3 8 8 C 1.34778 * 119.99479 * 299.65753 * 7 6 4 9 9 O 1.21590 * 120.00345 * 355.55761 * 8 7 6 10 10 N 1.34781 * 119.99709 * 175.55949 * 8 7 6 11 11 C 1.46497 * 119.99628 * 179.97438 * 10 8 7 12 12 H 1.08997 * 109.47599 * 325.00242 * 11 10 8 13 13 C 1.52999 * 109.46856 * 85.00365 * 11 10 8 14 14 C 1.50703 * 109.46786 * 204.99790 * 11 10 8 15 15 H 1.07999 * 120.00014 * 0.02562 * 14 11 10 16 16 C 1.37879 * 119.99790 * 180.02562 * 14 11 10 17 17 N 1.31510 * 120.00093 * 0.02562 * 16 14 11 18 18 Si 1.86796 * 119.99886 * 180.02562 * 16 14 11 19 19 H 1.48502 * 109.47208 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.46904 * 120.00114 * 18 16 14 21 21 H 1.48497 * 109.47398 * 240.00083 * 18 16 14 22 22 C 1.38843 * 119.02422 * 359.97438 * 6 4 3 23 23 C 1.50702 * 119.66904 * 179.97438 * 22 6 4 24 24 N 1.31826 * 120.66480 * 359.97438 * 22 6 4 25 25 H 1.09003 * 109.46493 * 90.00312 * 1 2 3 26 26 H 1.08999 * 109.46858 * 210.00344 * 1 2 3 27 27 H 1.08991 * 109.46600 * 330.00317 * 1 2 3 28 28 H 1.07997 * 120.38010 * 359.97337 * 3 2 1 29 29 H 1.08995 * 109.47350 * 270.16943 * 5 4 3 30 30 H 1.09001 * 109.46611 * 30.17124 * 5 4 3 31 31 H 1.08996 * 109.47045 * 150.16798 * 5 4 3 32 32 H 0.96993 * 120.00084 * 119.66231 * 7 6 4 33 33 H 0.96994 * 119.99992 * 0.02562 * 10 8 7 34 34 H 1.09003 * 109.47728 * 59.99897 * 13 11 10 35 35 H 1.09008 * 109.47220 * 179.97438 * 13 11 10 36 36 H 1.08996 * 109.47014 * 299.99626 * 13 11 10 37 37 H 0.97005 * 120.00035 * 179.97438 * 17 16 14 38 38 H 1.09007 * 109.46861 * 97.58677 * 23 22 6 39 39 H 1.08997 * 109.47687 * 217.58821 * 23 22 6 40 40 H 1.08998 * 109.46931 * 337.59093 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1888 1.2029 0.0000 4 6 3.5739 1.1955 0.0005 5 6 4.3529 2.4855 0.0000 6 6 4.2289 -0.0336 0.0005 7 7 5.6274 -0.0930 -0.0047 8 6 6.3212 0.4534 -1.0228 9 8 5.7320 0.9261 -1.9755 10 7 7.6683 0.4757 -0.9848 11 6 8.4225 1.0692 -2.0917 12 1 7.9045 0.8733 -3.0306 13 6 8.5376 2.5798 -1.8783 14 6 9.8011 0.4625 -2.1424 15 1 10.0867 -0.2901 -1.4224 16 6 10.6977 0.8683 -3.1080 17 7 10.3501 1.7851 -3.9844 18 14 12.4063 0.1159 -3.1713 19 1 12.5468 -0.8854 -2.0837 20 1 12.6061 -0.5487 -4.4842 21 1 13.4240 1.1831 -2.9968 22 6 3.4743 -1.1991 0.0005 23 6 4.1681 -2.5369 -0.0001 24 7 2.1571 -1.1472 0.0010 25 1 -0.3632 -0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3632 0.8900 0.5138 28 1 1.6476 2.1374 -0.0004 29 1 4.5385 2.7974 -1.0278 30 1 3.7799 3.2561 0.5158 31 1 5.3036 2.3360 0.5117 32 1 6.0970 -0.5275 0.7243 33 1 8.1384 0.0983 -0.2250 34 1 9.0556 2.7758 -0.9394 35 1 9.0992 3.0214 -2.7017 36 1 7.5405 3.0186 -1.8416 37 1 10.9811 2.0709 -4.6636 38 1 4.2153 -2.9221 1.0185 39 1 3.6123 -3.2342 -0.6269 40 1 5.1786 -2.4219 -0.3922 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334704668.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:27 Heat of formation + Delta-G solvation = -6.936610 kcal Electronic energy + Delta-G solvation = -21618.283011 eV Core-core repulsion = 18432.656626 eV Total energy + Delta-G solvation = -3185.626384 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.81157 -39.03601 -35.57644 -34.46438 -33.93930 -32.63140 -31.81089 -29.09021 -28.65709 -27.53202 -26.05276 -25.25901 -22.20234 -21.40090 -20.64773 -19.80586 -18.32663 -17.39175 -16.76416 -15.93470 -15.07624 -14.82783 -14.77229 -14.33027 -14.13750 -13.59738 -13.37005 -13.20888 -13.09264 -12.86958 -12.62539 -12.40387 -12.19112 -12.04224 -11.77163 -11.68023 -11.51017 -11.11029 -11.01054 -10.77766 -10.33571 -10.25878 -9.92362 -9.61567 -9.26373 -9.08103 -9.04221 -8.58455 -8.26173 -7.85371 -6.14619 -4.23648 1.12649 1.36632 3.19219 3.22440 3.30805 3.33771 3.69930 3.89013 4.25166 4.31358 4.68258 4.73676 4.94814 5.12006 5.18359 5.36007 5.44101 5.49338 5.51183 5.57367 5.61922 5.68381 5.80217 5.86228 6.08110 6.18817 6.28260 6.40263 6.57391 6.77036 6.95134 7.03979 7.10220 7.21029 7.45358 7.60699 7.81548 7.98639 8.08100 8.13627 8.72408 8.85360 9.26338 9.45685 10.91477 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.033875 B = 0.003952 C = 0.003694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.376818 B = 7083.435658 C = 7578.247413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.118 3.882 3 C -0.171 4.171 4 C -0.025 4.025 5 C -0.111 4.111 6 C 0.116 3.884 7 N -0.700 5.700 8 C 0.695 3.305 9 O -0.583 6.583 10 N -0.721 5.721 11 C 0.281 3.719 12 H 0.048 0.952 13 C -0.147 4.147 14 C -0.533 4.533 15 H 0.062 0.938 16 C 0.066 3.934 17 N -0.883 5.883 18 Si 0.902 3.098 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.283 1.283 22 C 0.124 3.876 23 C -0.102 4.102 24 N -0.482 5.482 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.133 0.867 29 H 0.090 0.910 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.401 0.599 33 H 0.385 0.615 34 H 0.025 0.975 35 H 0.090 0.910 36 H 0.014 0.986 37 H 0.264 0.736 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.464 -2.693 11.138 17.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.020 4.020 3 C -0.192 4.192 4 C -0.035 4.035 5 C -0.168 4.168 6 C 0.019 3.981 7 N -0.353 5.353 8 C 0.396 3.604 9 O -0.460 6.460 10 N -0.372 5.372 11 C 0.179 3.821 12 H 0.066 0.934 13 C -0.206 4.206 14 C -0.572 4.572 15 H 0.080 0.920 16 C -0.137 4.137 17 N -0.520 5.520 18 Si 0.730 3.270 19 H -0.197 1.197 20 H -0.209 1.209 21 H -0.209 1.209 22 C -0.016 4.016 23 C -0.159 4.159 24 N -0.193 5.193 25 H 0.094 0.906 26 H 0.093 0.907 27 H 0.091 0.909 28 H 0.151 0.849 29 H 0.108 0.892 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.236 0.764 33 H 0.217 0.783 34 H 0.044 0.956 35 H 0.109 0.891 36 H 0.033 0.967 37 H 0.074 0.926 38 H 0.094 0.906 39 H 0.096 0.904 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -14.291 -2.880 10.037 17.699 hybrid contribution 1.927 0.105 0.571 2.012 sum -12.364 -2.775 10.608 16.526 Atomic orbital electron populations 1.20647 0.88965 1.03058 1.02916 1.21144 0.96772 0.88187 0.95885 1.21690 0.93460 0.99206 1.04799 1.20444 0.93731 0.95369 0.93930 1.20786 0.99245 0.92791 1.03959 1.17954 0.83566 0.92891 1.03685 1.42612 1.03468 1.63429 1.25768 1.16150 0.82770 0.79323 0.82187 1.90896 1.69053 1.52376 1.33679 1.45832 1.02919 1.62958 1.25524 1.18661 0.89718 0.89574 0.84130 0.93373 1.22097 0.98102 0.98859 1.01507 1.21249 0.97259 1.23104 1.15557 0.92027 1.24882 0.98830 0.94895 0.95119 1.69912 1.35628 1.29525 1.16967 0.86384 0.83603 0.79009 0.78031 1.19749 1.20869 1.20880 1.21331 0.89174 0.94981 0.96101 1.20649 1.00216 0.92269 1.02764 1.67292 1.08484 1.29250 1.14255 0.90611 0.90716 0.90941 0.84918 0.89176 0.91752 0.91447 0.76354 0.78252 0.95554 0.89144 0.96657 0.92605 0.90640 0.90433 0.90505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.91 10.17 36.01 0.37 -0.55 16 2 C 0.12 1.56 6.78 -82.57 -0.56 1.00 16 3 C -0.17 -2.26 9.44 -39.47 -0.37 -2.63 16 4 C -0.03 -0.38 5.57 -104.14 -0.58 -0.96 16 5 C -0.11 -1.64 8.55 36.01 0.31 -1.33 16 6 C 0.12 1.82 5.65 -83.53 -0.47 1.34 16 7 N -0.70 -10.70 3.61 -14.12 -0.05 -10.75 16 8 C 0.70 13.80 7.17 -86.91 -0.62 13.18 16 9 O -0.58 -14.03 14.14 5.29 0.07 -13.96 16 10 N -0.72 -14.62 5.07 -59.81 -0.30 -14.93 16 11 C 0.28 7.04 2.56 -69.08 -0.18 6.87 16 12 H 0.05 1.41 7.58 -51.93 -0.39 1.02 16 13 C -0.15 -3.59 9.26 37.16 0.34 -3.25 16 14 C -0.53 -13.91 8.73 -34.44 -0.30 -14.21 16 15 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 16 C 0.07 1.76 5.30 -17.82 -0.09 1.66 16 17 N -0.88 -24.66 11.32 55.43 0.63 -24.04 16 18 Si 0.90 20.43 29.54 -169.99 -5.02 15.41 16 19 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 20 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 21 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 22 C 0.12 1.85 6.80 -82.37 -0.56 1.29 16 23 C -0.10 -1.23 10.05 36.01 0.36 -0.87 16 24 N -0.48 -7.16 10.18 -5.59 -0.06 -7.22 16 25 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 26 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.07 0.51 8.07 -51.93 -0.42 0.09 16 28 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 29 H 0.09 1.57 7.30 -51.93 -0.38 1.19 16 30 H 0.06 0.75 8.10 -51.93 -0.42 0.33 16 31 H 0.07 1.03 7.12 -51.93 -0.37 0.66 16 32 H 0.40 4.76 8.84 -40.82 -0.36 4.40 16 33 H 0.39 6.65 8.56 -40.82 -0.35 6.30 16 34 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.09 2.42 6.07 -51.92 -0.32 2.10 16 36 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 37 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 40 H 0.08 0.95 7.21 -51.93 -0.37 0.58 16 LS Contribution 333.01 15.07 5.02 5.02 Total: -1.00 -31.81 333.01 -7.95 -39.76 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: -5.88 Total: 9.16 kcal Atomic # 6 Polarization: 3.90 SS G_CDS: -2.36 Total: 1.54 kcal Atomic # 7 Polarization: -57.15 SS G_CDS: 0.22 Total: -56.93 kcal Atomic # 8 Polarization: -14.03 SS G_CDS: 0.07 Total: -13.96 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.81 -7.95 -39.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334704668.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.828 kcal (2) G-P(sol) polarization free energy of solvation -31.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds