Wall clock time and date at job start Mon Mar 30 2020 01:50:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38265 * 119.54404 * 2 1 4 4 C 1.38508 * 119.23744 * 179.97438 * 3 2 1 5 5 C 1.50701 * 120.81976 * 179.97438 * 4 3 2 6 6 C 1.39270 * 118.36252 * 0.02562 * 4 3 2 7 7 N 1.39975 * 120.48958 * 179.72752 * 6 4 3 8 8 C 1.34778 * 119.99479 * 299.65753 * 7 6 4 9 9 O 1.21590 * 120.00345 * 355.55761 * 8 7 6 10 10 N 1.34781 * 119.99709 * 175.55949 * 8 7 6 11 11 C 1.46497 * 119.99628 * 179.97438 * 10 8 7 12 12 H 1.08997 * 109.47599 * 325.00242 * 11 10 8 13 13 C 1.52999 * 109.46856 * 85.00365 * 11 10 8 14 14 C 1.50703 * 109.46786 * 204.99790 * 11 10 8 15 15 H 1.07999 * 120.00014 * 0.02562 * 14 11 10 16 16 C 1.37879 * 119.99790 * 180.02562 * 14 11 10 17 17 N 1.31510 * 120.00093 * 0.02562 * 16 14 11 18 18 Si 1.86796 * 119.99886 * 180.02562 * 16 14 11 19 19 H 1.48502 * 109.47208 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.46904 * 120.00114 * 18 16 14 21 21 H 1.48497 * 109.47398 * 240.00083 * 18 16 14 22 22 C 1.38843 * 119.02422 * 359.97438 * 6 4 3 23 23 C 1.50702 * 119.66904 * 179.97438 * 22 6 4 24 24 N 1.31826 * 120.66480 * 359.97438 * 22 6 4 25 25 H 1.09003 * 109.46493 * 90.00312 * 1 2 3 26 26 H 1.08999 * 109.46858 * 210.00344 * 1 2 3 27 27 H 1.08991 * 109.46600 * 330.00317 * 1 2 3 28 28 H 1.07997 * 120.38010 * 359.97337 * 3 2 1 29 29 H 1.08995 * 109.47350 * 270.16943 * 5 4 3 30 30 H 1.09001 * 109.46611 * 30.17124 * 5 4 3 31 31 H 1.08996 * 109.47045 * 150.16798 * 5 4 3 32 32 H 0.96993 * 120.00084 * 119.66231 * 7 6 4 33 33 H 0.96994 * 119.99992 * 0.02562 * 10 8 7 34 34 H 1.09003 * 109.47728 * 59.99897 * 13 11 10 35 35 H 1.09008 * 109.47220 * 179.97438 * 13 11 10 36 36 H 1.08996 * 109.47014 * 299.99626 * 13 11 10 37 37 H 0.97005 * 120.00035 * 179.97438 * 17 16 14 38 38 H 1.09007 * 109.46861 * 97.58677 * 23 22 6 39 39 H 1.08997 * 109.47687 * 217.58821 * 23 22 6 40 40 H 1.08998 * 109.46931 * 337.59093 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1888 1.2029 0.0000 4 6 3.5739 1.1955 0.0005 5 6 4.3529 2.4855 0.0000 6 6 4.2289 -0.0336 0.0005 7 7 5.6274 -0.0930 -0.0047 8 6 6.3212 0.4534 -1.0228 9 8 5.7320 0.9261 -1.9755 10 7 7.6683 0.4757 -0.9848 11 6 8.4225 1.0692 -2.0917 12 1 7.9045 0.8733 -3.0306 13 6 8.5376 2.5798 -1.8783 14 6 9.8011 0.4625 -2.1424 15 1 10.0867 -0.2901 -1.4224 16 6 10.6977 0.8683 -3.1080 17 7 10.3501 1.7851 -3.9844 18 14 12.4063 0.1159 -3.1713 19 1 12.5468 -0.8854 -2.0837 20 1 12.6061 -0.5487 -4.4842 21 1 13.4240 1.1831 -2.9968 22 6 3.4743 -1.1991 0.0005 23 6 4.1681 -2.5369 -0.0001 24 7 2.1571 -1.1472 0.0010 25 1 -0.3632 -0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3632 0.8900 0.5138 28 1 1.6476 2.1374 -0.0004 29 1 4.5385 2.7974 -1.0278 30 1 3.7799 3.2561 0.5158 31 1 5.3036 2.3360 0.5117 32 1 6.0970 -0.5275 0.7243 33 1 8.1384 0.0983 -0.2250 34 1 9.0556 2.7758 -0.9394 35 1 9.0992 3.0214 -2.7017 36 1 7.5405 3.0186 -1.8416 37 1 10.9811 2.0709 -4.6636 38 1 4.2153 -2.9221 1.0185 39 1 3.6123 -3.2342 -0.6269 40 1 5.1786 -2.4219 -0.3922 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334704668.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:27 Heat of formation + Delta-G solvation = -28.101747 kcal Electronic energy + Delta-G solvation = -21619.200800 eV Core-core repulsion = 18432.656626 eV Total energy + Delta-G solvation = -3186.544174 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.03290 -40.49449 -37.14742 -36.09067 -35.04809 -34.39032 -33.14542 -30.68277 -29.82959 -28.65365 -27.36124 -27.11393 -23.69538 -22.57002 -22.07725 -21.37782 -19.93189 -18.79109 -17.93770 -17.77556 -16.87481 -16.07548 -15.92736 -15.81294 -15.65109 -15.07952 -14.64188 -14.36810 -14.26013 -14.06641 -13.90715 -13.78944 -13.58891 -13.12393 -13.00548 -12.91542 -12.88773 -12.72434 -12.62792 -12.55820 -12.26917 -12.11288 -11.30848 -11.21050 -11.07963 -10.60968 -10.43831 -10.23228 -9.78387 -9.27200 -8.17149 -6.34078 0.03121 0.24404 1.45215 1.46173 1.57922 1.79854 2.21389 2.42679 2.70367 3.13786 3.27416 3.47730 3.64598 3.71585 4.12281 4.28482 4.40568 4.56337 4.59803 4.64630 4.69993 4.73824 4.76001 4.84723 4.92986 4.98130 5.11085 5.13928 5.14547 5.22212 5.28916 5.39490 5.48021 5.60762 5.66599 5.82361 5.91388 6.11034 6.23311 6.74297 7.00348 7.25965 7.35168 7.72882 8.89511 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.033875 B = 0.003952 C = 0.003694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.376818 B = 7083.435658 C = 7578.247413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.114 3.886 3 C -0.172 4.172 4 C -0.043 4.043 5 C -0.104 4.104 6 C 0.086 3.914 7 N -0.676 5.676 8 C 0.699 3.301 9 O -0.627 6.627 10 N -0.715 5.715 11 C 0.290 3.710 12 H -0.003 1.003 13 C -0.132 4.132 14 C -0.545 4.545 15 H 0.075 0.925 16 C 0.014 3.986 17 N -0.917 5.917 18 Si 0.973 3.027 19 H -0.259 1.259 20 H -0.285 1.285 21 H -0.279 1.279 22 C 0.116 3.884 23 C -0.099 4.099 24 N -0.498 5.498 25 H 0.083 0.917 26 H 0.078 0.922 27 H 0.098 0.902 28 H 0.162 0.838 29 H 0.058 0.942 30 H 0.095 0.905 31 H 0.057 0.943 32 H 0.418 0.582 33 H 0.403 0.597 34 H 0.040 0.960 35 H 0.066 0.934 36 H 0.012 0.988 37 H 0.265 0.735 38 H 0.100 0.900 39 H 0.078 0.922 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.992 -3.501 12.955 19.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.024 4.024 3 C -0.192 4.192 4 C -0.053 4.053 5 C -0.160 4.160 6 C -0.010 4.010 7 N -0.330 5.330 8 C 0.400 3.600 9 O -0.508 6.508 10 N -0.368 5.368 11 C 0.187 3.813 12 H 0.015 0.985 13 C -0.191 4.191 14 C -0.583 4.583 15 H 0.093 0.907 16 C -0.186 4.186 17 N -0.556 5.556 18 Si 0.798 3.202 19 H -0.183 1.183 20 H -0.211 1.211 21 H -0.205 1.205 22 C -0.024 4.024 23 C -0.156 4.156 24 N -0.210 5.210 25 H 0.102 0.898 26 H 0.097 0.903 27 H 0.117 0.883 28 H 0.180 0.820 29 H 0.077 0.923 30 H 0.114 0.886 31 H 0.076 0.924 32 H 0.257 0.743 33 H 0.238 0.762 34 H 0.059 0.941 35 H 0.084 0.916 36 H 0.031 0.969 37 H 0.074 0.926 38 H 0.119 0.881 39 H 0.097 0.903 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -14.834 -3.726 11.929 19.397 hybrid contribution 1.939 0.358 0.017 1.972 sum -12.895 -3.368 11.946 17.898 Atomic orbital electron populations 1.20763 0.86055 1.04635 1.03843 1.21854 0.98734 0.87752 0.94058 1.22028 0.92734 1.00645 1.03829 1.20690 0.94934 0.95234 0.94397 1.20690 0.99424 0.93779 1.02155 1.18183 0.83293 0.93765 1.05753 1.42179 1.03580 1.62318 1.24896 1.16173 0.82434 0.78978 0.82423 1.90868 1.69838 1.54272 1.35803 1.45406 1.03189 1.63145 1.25062 1.18222 0.89452 0.90133 0.83523 0.98527 1.21901 0.97651 0.98449 1.01115 1.21572 0.97499 1.23334 1.15887 0.90738 1.25787 1.02877 0.95237 0.94683 1.70062 1.37030 1.30845 1.17646 0.85286 0.78563 0.78332 0.78066 1.18287 1.21126 1.20463 1.21691 0.89492 0.95664 0.95507 1.20691 0.99442 0.91131 1.04325 1.67407 1.08384 1.30177 1.14998 0.89813 0.90274 0.88296 0.82007 0.92344 0.88640 0.92442 0.74275 0.76225 0.94104 0.91560 0.96878 0.92574 0.88112 0.90318 0.91143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.50 10.17 71.24 0.72 -0.78 16 2 C 0.11 2.78 6.78 42.56 0.29 3.07 16 3 C -0.17 -4.24 9.44 22.34 0.21 -4.03 16 4 C -0.04 -1.28 5.57 -19.55 -0.11 -1.39 16 5 C -0.10 -3.05 8.55 71.24 0.61 -2.44 16 6 C 0.09 2.67 5.65 38.23 0.22 2.88 16 7 N -0.68 -20.45 3.61 -316.85 -1.14 -21.60 16 8 C 0.70 28.20 7.17 179.05 1.28 29.48 16 9 O -0.63 -31.35 14.14 -4.00 -0.06 -31.40 16 10 N -0.72 -29.19 5.07 -461.41 -2.34 -31.53 16 11 C 0.29 14.93 2.56 44.25 0.11 15.04 16 12 H 0.00 -0.20 7.58 -2.39 -0.02 -0.21 16 13 C -0.13 -6.63 9.26 71.98 0.67 -5.96 16 14 C -0.54 -28.41 8.73 25.60 0.22 -28.18 16 15 H 0.07 3.61 7.74 -2.91 -0.02 3.59 16 16 C 0.01 0.75 5.30 84.66 0.45 1.20 16 17 N -0.92 -52.33 11.32 21.45 0.24 -52.09 16 18 Si 0.97 41.58 29.54 68.60 2.03 43.60 16 19 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 20 H -0.29 -12.23 7.11 99.48 0.71 -11.52 16 21 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 22 C 0.12 3.35 6.80 42.71 0.29 3.64 16 23 C -0.10 -2.26 10.05 71.24 0.72 -1.55 16 24 N -0.50 -14.13 10.18 -171.59 -1.75 -15.88 16 25 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.10 1.03 8.07 -2.39 -0.02 1.01 16 28 H 0.16 2.89 8.06 -2.91 -0.02 2.87 16 29 H 0.06 2.10 7.30 -2.39 -0.02 2.08 16 30 H 0.09 2.10 8.10 -2.39 -0.02 2.08 16 31 H 0.06 1.75 7.12 -2.39 -0.02 1.73 16 32 H 0.42 9.47 8.84 -92.71 -0.82 8.65 16 33 H 0.40 13.53 8.56 -92.71 -0.79 12.74 16 34 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.07 3.65 6.07 -2.38 -0.01 3.64 16 36 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.27 14.28 8.31 -92.70 -0.77 13.51 16 38 H 0.10 1.77 8.14 -2.38 -0.02 1.75 16 39 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 40 H 0.07 1.69 7.21 -2.39 -0.02 1.67 16 Total: -1.00 -70.54 333.01 2.11 -68.42 By element: Atomic # 1 Polarization: 30.02 SS G_CDS: -0.55 Total: 29.47 kcal Atomic # 6 Polarization: 5.31 SS G_CDS: 5.68 Total: 10.99 kcal Atomic # 7 Polarization: -116.10 SS G_CDS: -4.99 Total: -121.09 kcal Atomic # 8 Polarization: -31.35 SS G_CDS: -0.06 Total: -31.40 kcal Atomic # 14 Polarization: 41.58 SS G_CDS: 2.03 Total: 43.60 kcal Total: -70.54 2.11 -68.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334704668.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.322 kcal (2) G-P(sol) polarization free energy of solvation -70.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds