Wall clock time and date at job start Mon Mar 30 2020 01:50:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38271 * 119.54444 * 2 1 4 4 C 1.38508 * 119.23757 * 180.27433 * 3 2 1 5 5 C 1.50696 * 120.82217 * 179.73450 * 4 3 2 6 6 C 1.39281 * 118.35820 * 359.46124 * 4 3 2 7 7 N 1.39966 * 120.48404 * 180.25223 * 6 4 3 8 8 C 1.34771 * 120.00202 * 304.98660 * 7 6 4 9 9 O 1.21589 * 119.99965 * 353.77164 * 8 7 6 10 10 N 1.34780 * 120.00230 * 173.76860 * 8 7 6 11 11 C 1.46495 * 119.99710 * 0.02562 * 10 8 7 12 12 C 1.46498 * 120.00250 * 180.02562 * 10 8 7 13 13 C 1.50704 * 109.47224 * 89.99599 * 12 10 8 14 14 H 1.07998 * 119.99932 * 0.02562 * 13 12 10 15 15 C 1.37877 * 119.99906 * 179.97438 * 13 12 10 16 16 N 1.31513 * 120.00114 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00108 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.46758 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.47134 * 119.99991 * 17 15 13 20 20 H 1.48491 * 109.47278 * 240.00233 * 17 15 13 21 21 C 1.38843 * 119.02336 * 0.27161 * 6 4 3 22 22 C 1.50701 * 119.66384 * 179.97438 * 21 6 4 23 23 N 1.31819 * 120.66754 * 359.97438 * 21 6 4 24 24 H 1.08994 * 109.47099 * 270.27723 * 1 2 3 25 25 H 1.09003 * 109.46880 * 30.27509 * 1 2 3 26 26 H 1.08997 * 109.46980 * 150.27306 * 1 2 3 27 27 H 1.07994 * 120.38096 * 0.02849 * 3 2 1 28 28 H 1.09003 * 109.46800 * 275.80325 * 5 4 3 29 29 H 1.08998 * 109.47140 * 155.80306 * 5 4 3 30 30 H 1.09002 * 109.46794 * 35.79772 * 5 4 3 31 31 H 0.97007 * 119.99725 * 124.98703 * 7 6 4 32 32 H 1.08995 * 109.47330 * 90.00152 * 11 10 8 33 33 H 1.09010 * 109.47080 * 209.99940 * 11 10 8 34 34 H 1.08995 * 109.47303 * 329.99893 * 11 10 8 35 35 H 1.08995 * 109.47030 * 210.00019 * 12 10 8 36 36 H 1.09004 * 109.46906 * 330.00186 * 12 10 8 37 37 H 0.97002 * 120.00440 * 179.97438 * 16 15 13 38 38 H 1.09002 * 109.47061 * 89.51078 * 22 21 6 39 39 H 1.08992 * 109.47247 * 209.50736 * 22 21 6 40 40 H 1.08995 * 109.47181 * 329.51569 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1888 1.2029 0.0000 4 6 3.5739 1.1955 -0.0058 5 6 4.3529 2.4855 -0.0120 6 6 4.2289 -0.0336 0.0001 7 7 5.6273 -0.0930 -0.0001 8 6 6.3287 0.5423 -0.9597 9 8 5.7479 1.0711 -1.8878 10 7 7.6738 0.5914 -0.8905 11 6 8.3735 -0.0463 0.2274 12 6 8.4361 1.2824 -1.9334 13 6 8.6152 2.7287 -1.5498 14 1 8.2028 3.0963 -0.6218 15 6 9.3065 3.5824 -2.3830 16 7 9.8092 3.1347 -3.5128 17 14 9.5292 5.3750 -1.9073 18 1 8.8744 5.6246 -0.5979 19 1 10.9780 5.6830 -1.8023 20 1 8.9124 6.2423 -2.9429 21 6 3.4743 -1.1991 0.0057 22 6 4.1681 -2.5369 0.0116 23 7 2.1571 -1.1472 0.0060 24 1 -0.3633 0.0050 1.0276 25 1 -0.3633 0.8875 -0.5181 26 1 -0.3633 -0.8924 -0.5096 27 1 1.6476 2.1375 0.0005 28 1 4.4475 2.8478 -1.0357 29 1 5.3449 2.3129 0.4055 30 1 3.8297 3.2287 0.5897 31 1 6.0916 -0.5914 0.6906 32 1 8.6065 -1.0791 -0.0314 33 1 9.2976 0.4940 0.4334 34 1 7.7371 -0.0282 1.1122 35 1 9.4131 0.8115 -2.0415 36 1 7.8967 1.2214 -2.8786 37 1 10.2952 3.7353 -4.0993 38 1 4.3436 -2.8507 1.0406 39 1 3.5413 -3.2734 -0.4909 40 1 5.1213 -2.4541 -0.5105 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334712130.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:11 Heat of formation + Delta-G solvation = 6.106722 kcal Electronic energy + Delta-G solvation = -21905.166410 eV Core-core repulsion = 18720.105627 eV Total energy + Delta-G solvation = -3185.060783 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.82332 -39.11987 -35.45307 -34.65573 -33.83816 -32.74756 -31.79372 -28.95367 -27.91456 -27.40023 -26.43126 -25.46023 -22.98779 -21.54298 -20.91834 -19.44230 -17.96186 -16.81716 -16.74137 -16.41246 -15.03450 -14.79027 -14.72109 -14.54613 -14.11538 -13.53821 -13.28763 -13.14034 -12.97993 -12.91620 -12.75391 -12.32431 -12.21391 -12.10299 -12.00214 -11.93243 -11.64528 -11.38645 -11.22080 -10.91332 -10.61610 -10.18147 -9.99090 -9.63406 -9.51952 -9.18696 -9.01895 -8.45817 -8.12326 -7.63941 -6.06211 -4.10928 1.17706 1.43184 3.18744 3.27747 3.35676 3.39555 3.72286 3.93224 4.27862 4.39042 4.53779 4.74794 4.81664 5.16287 5.27826 5.34935 5.49480 5.50983 5.51829 5.56656 5.58354 5.63111 5.72963 5.82578 5.87881 6.01802 6.07112 6.10875 6.24921 6.38596 6.54502 6.64153 6.75822 7.11417 7.32681 7.48555 7.64181 7.91810 8.12150 8.21053 8.57131 8.90314 9.25296 9.54770 11.01717 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024301 B = 0.004799 C = 0.004265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.938142 B = 5833.240875 C = 6564.154332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.114 3.886 3 C -0.168 4.168 4 C -0.025 4.025 5 C -0.109 4.109 6 C 0.117 3.883 7 N -0.697 5.697 8 C 0.699 3.301 9 O -0.568 6.568 10 N -0.613 5.613 11 C 0.083 3.917 12 C 0.260 3.740 13 C -0.525 4.525 14 H 0.057 0.943 15 C 0.061 3.939 16 N -0.894 5.894 17 Si 0.897 3.103 18 H -0.274 1.274 19 H -0.284 1.284 20 H -0.283 1.283 21 C 0.117 3.883 22 C -0.100 4.100 23 N -0.480 5.480 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.133 0.867 28 H 0.093 0.907 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.400 0.600 32 H 0.045 0.955 33 H 0.078 0.922 34 H 0.050 0.950 35 H 0.034 0.966 36 H 0.045 0.955 37 H 0.263 0.737 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.636 -8.056 10.738 17.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.024 4.024 3 C -0.189 4.189 4 C -0.035 4.035 5 C -0.166 4.166 6 C 0.020 3.980 7 N -0.351 5.351 8 C 0.401 3.599 9 O -0.443 6.443 10 N -0.349 5.349 11 C -0.061 4.061 12 C 0.141 3.859 13 C -0.564 4.564 14 H 0.075 0.925 15 C -0.141 4.141 16 N -0.533 5.533 17 Si 0.725 3.275 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.209 1.209 21 C -0.023 4.023 22 C -0.157 4.157 23 N -0.191 5.191 24 H 0.092 0.908 25 H 0.091 0.909 26 H 0.093 0.907 27 H 0.151 0.849 28 H 0.111 0.889 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.238 0.762 32 H 0.063 0.937 33 H 0.097 0.903 34 H 0.069 0.931 35 H 0.051 0.949 36 H 0.063 0.937 37 H 0.072 0.928 38 H 0.093 0.907 39 H 0.096 0.904 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -12.302 -8.339 9.859 17.834 hybrid contribution 1.031 1.631 0.561 2.009 sum -11.271 -6.708 10.420 16.751 Atomic orbital electron populations 1.20631 0.89011 1.03214 1.02635 1.21109 0.96712 0.88173 0.96391 1.21688 0.93472 0.99203 1.04508 1.20448 0.93724 0.95433 0.93867 1.20810 0.99225 0.92569 1.03969 1.18016 0.83531 0.93073 1.03413 1.42764 1.03445 1.57396 1.31480 1.15903 0.82222 0.79652 0.82130 1.90915 1.68729 1.50532 1.34156 1.47474 1.03429 1.56958 1.27053 1.21594 0.98518 0.97252 0.88781 1.19241 0.90106 0.90951 0.85626 1.21471 1.34459 0.94406 1.06051 0.92450 1.24923 0.95527 0.98815 0.94796 1.69938 1.36643 1.35706 1.11058 0.86463 0.77646 0.84877 0.78544 1.19848 1.20984 1.20879 1.21224 0.89207 0.94713 0.97152 1.20626 1.00117 0.92420 1.02580 1.67276 1.08375 1.29263 1.14235 0.90799 0.90917 0.90734 0.84917 0.88886 0.91367 0.91985 0.76236 0.93695 0.90304 0.93139 0.94851 0.93733 0.92756 0.90740 0.90435 0.90704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.95 10.16 36.01 0.37 -0.58 16 2 C 0.11 1.57 6.78 -82.57 -0.56 1.01 16 3 C -0.17 -2.37 9.46 -39.47 -0.37 -2.75 16 4 C -0.02 -0.41 5.54 -104.14 -0.58 -0.99 16 5 C -0.11 -1.86 8.41 36.00 0.30 -1.56 16 6 C 0.12 1.92 5.77 -83.53 -0.48 1.44 16 7 N -0.70 -11.27 3.69 -14.12 -0.05 -11.32 16 8 C 0.70 14.57 6.54 -86.92 -0.57 14.00 16 9 O -0.57 -14.32 13.63 5.29 0.07 -14.25 16 10 N -0.61 -12.72 2.86 -188.74 -0.54 -13.26 16 11 C 0.08 1.25 10.15 59.84 0.61 1.85 16 12 C 0.26 6.68 5.16 -5.19 -0.03 6.66 16 13 C -0.52 -14.56 9.39 -34.44 -0.32 -14.89 16 14 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 15 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 16 N -0.89 -26.29 13.29 55.43 0.74 -25.56 16 17 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16 18 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 21 C 0.12 1.77 6.80 -82.37 -0.56 1.21 16 22 C -0.10 -1.17 9.88 36.01 0.36 -0.82 16 23 N -0.48 -7.26 10.18 -5.59 -0.06 -7.32 16 24 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.07 0.59 8.08 -51.93 -0.42 0.17 16 26 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.13 1.52 8.06 -52.49 -0.42 1.10 16 28 H 0.09 1.84 7.32 -51.93 -0.38 1.46 16 29 H 0.07 1.26 6.53 -51.93 -0.34 0.92 16 30 H 0.06 0.87 8.13 -51.93 -0.42 0.44 16 31 H 0.40 5.12 6.59 -40.82 -0.27 4.85 16 32 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.08 1.22 8.07 -51.92 -0.42 0.80 16 34 H 0.05 0.61 6.46 -51.93 -0.34 0.28 16 35 H 0.03 0.86 8.07 -51.93 -0.42 0.45 16 36 H 0.04 1.30 7.42 -51.93 -0.39 0.92 16 37 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.07 0.89 7.46 -51.93 -0.39 0.50 16 LS Contribution 333.03 15.07 5.02 5.02 Total: -1.00 -33.68 333.03 -7.64 -41.31 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -5.86 Total: 2.61 kcal Atomic # 6 Polarization: 8.15 SS G_CDS: -1.94 Total: 6.21 kcal Atomic # 7 Polarization: -57.54 SS G_CDS: 0.09 Total: -57.45 kcal Atomic # 8 Polarization: -14.32 SS G_CDS: 0.07 Total: -14.25 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -33.68 -7.64 -41.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334712130.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.421 kcal (2) G-P(sol) polarization free energy of solvation -33.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds