Wall clock time and date at job start Mon Mar 30 2020 02:03:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35349 * 126.38232 * 2 1 4 4 C 1.41542 * 105.50437 * 180.20361 * 3 2 1 5 5 C 1.47602 * 126.52570 * 179.80906 * 4 3 2 6 6 O 1.21606 * 119.99910 * 359.97438 * 5 4 3 7 7 N 1.34773 * 120.00041 * 179.97438 * 5 4 3 8 8 C 1.36912 * 119.99781 * 180.02562 * 7 5 4 9 9 H 1.08000 * 120.00200 * 359.97438 * 8 7 5 10 10 C 1.39028 * 119.99825 * 179.97438 * 8 7 5 11 11 N 1.31380 * 120.00115 * 0.02562 * 10 8 7 12 12 Si 1.86797 * 119.99884 * 179.97438 * 10 8 7 13 13 H 1.48499 * 109.47038 * 60.00381 * 12 10 8 14 14 H 1.48504 * 109.46906 * 180.02562 * 12 10 8 15 15 H 1.48503 * 109.47246 * 300.00281 * 12 10 8 16 16 N 1.31864 * 106.95103 * 359.78172 * 4 3 2 17 17 N 1.28472 * 110.06167 * 359.97438 * 16 4 3 18 18 C 1.46500 * 124.87609 * 179.97438 * 17 16 4 19 19 C 1.52997 * 109.47473 * 60.02593 * 18 17 16 20 20 C 1.53000 * 109.47060 * 180.02562 * 19 18 17 21 21 C 1.52996 * 109.47328 * 60.00126 * 20 19 18 22 22 C 1.53002 * 109.46891 * 299.99597 * 21 20 19 23 23 C 1.52997 * 109.46978 * 60.00410 * 22 21 20 24 24 H 1.08996 * 109.47376 * 270.16848 * 1 2 3 25 25 H 1.09007 * 109.47148 * 30.17039 * 1 2 3 26 26 H 1.09001 * 109.47274 * 150.16894 * 1 2 3 27 27 H 1.07999 * 127.24387 * 359.97438 * 3 2 1 28 28 H 0.96998 * 120.00256 * 0.02562 * 7 5 4 29 29 H 0.96996 * 120.00316 * 179.97438 * 11 10 8 30 30 H 1.08998 * 109.46845 * 180.02562 * 18 17 16 31 31 H 1.09002 * 109.47153 * 59.99757 * 19 18 17 32 32 H 1.09001 * 109.46832 * 299.99948 * 19 18 17 33 33 H 1.09004 * 109.46724 * 180.02562 * 20 19 18 34 34 H 1.09001 * 109.47194 * 299.99650 * 20 19 18 35 35 H 1.08992 * 109.47554 * 59.99639 * 21 20 19 36 36 H 1.09004 * 109.47108 * 179.97438 * 21 20 19 37 37 H 1.09002 * 109.47097 * 180.02562 * 22 21 20 38 38 H 1.09001 * 109.47142 * 300.00176 * 22 21 20 39 39 H 1.09001 * 109.47375 * 59.99908 * 23 22 21 40 40 H 1.09000 * 109.47140 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3098 1.0897 0.0000 4 6 3.6323 0.5852 -0.0048 5 6 4.8758 1.3804 -0.0107 6 8 4.8207 2.5952 -0.0122 7 7 6.0723 0.7601 -0.0144 8 6 7.2258 1.4977 -0.0193 9 1 7.1768 2.5766 -0.0206 10 6 8.4600 0.8579 -0.0225 11 7 8.5196 -0.4546 -0.0215 12 14 10.0337 1.8642 -0.0299 13 1 10.0779 2.7227 1.1810 14 1 11.2050 0.9514 -0.0331 15 1 10.0693 2.7186 -1.2440 16 7 3.5420 -0.7303 -0.0026 17 7 2.3079 -1.0873 0.0037 18 6 1.8372 -2.4746 0.0073 19 6 2.3618 -3.1880 1.2551 20 6 1.8707 -4.6370 1.2584 21 6 2.3849 -5.3527 0.0078 22 6 1.8603 -4.6394 -1.2400 23 6 2.3514 -3.1904 -1.2434 24 1 -0.3634 0.0030 1.0276 25 1 -0.3634 0.8885 -0.5165 26 1 -0.3634 -0.8915 -0.5112 27 1 2.0054 2.1259 -0.0004 28 1 6.1163 -0.2089 -0.0136 29 1 9.3807 -0.9010 -0.0241 30 1 0.7474 -2.4885 0.0121 31 1 1.9959 -2.6778 2.1461 32 1 3.4517 -3.1741 1.2503 33 1 2.2441 -5.1451 2.1476 34 1 0.7808 -4.6513 1.2630 35 1 3.4747 -5.3385 0.0032 36 1 2.0354 -6.3852 0.0105 37 1 2.2262 -5.1496 -2.1310 38 1 0.7704 -4.6537 -1.2354 39 1 3.4413 -3.1762 -1.2480 40 1 1.9780 -2.6824 -2.1326 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334816699.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:04 Heat of formation + Delta-G solvation = 13.662970 kcal Electronic energy + Delta-G solvation = -21617.095755 eV Core-core repulsion = 18432.362636 eV Total energy + Delta-G solvation = -3184.733120 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.19658 -38.52253 -37.61136 -33.89414 -32.94299 -32.35203 -31.09523 -31.01058 -28.91574 -26.73359 -25.34226 -23.37229 -22.83560 -21.76725 -20.22669 -19.82470 -18.42731 -17.81581 -16.72082 -15.77700 -15.52969 -15.11029 -14.53783 -14.40345 -14.30827 -13.85812 -13.77883 -13.23998 -13.05530 -13.04315 -12.81044 -12.50451 -12.45702 -12.21958 -11.98107 -11.50992 -11.43611 -11.33393 -11.03824 -10.80809 -10.62780 -10.41354 -10.40332 -10.23315 -10.00092 -9.48665 -8.50955 -8.44490 -8.39288 -7.91812 -6.39700 -3.75827 2.31344 2.76305 2.81956 3.28411 3.29576 3.33533 4.20247 4.33701 4.46359 4.55713 4.64589 4.75925 4.83732 4.97974 4.98834 5.08769 5.20305 5.21772 5.27231 5.36303 5.44245 5.50754 5.52811 5.60450 5.76978 5.77902 5.87227 5.94607 5.99287 6.01876 6.09109 6.17429 6.27998 6.40814 6.51190 7.09914 7.32248 7.56798 8.10250 8.52658 8.73497 9.20277 9.62674 10.15309 10.77287 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018236 B = 0.004817 C = 0.003999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.030420 B = 5811.207481 C = 7000.148846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.007 4.007 3 C -0.189 4.189 4 C 0.021 3.979 5 C 0.511 3.489 6 O -0.594 6.594 7 N -0.536 5.536 8 C -0.298 4.298 9 H 0.106 0.894 10 C 0.024 3.976 11 N -0.891 5.891 12 Si 0.934 3.066 13 H -0.272 1.272 14 H -0.284 1.284 15 H -0.272 1.272 16 N -0.271 5.271 17 N -0.288 5.288 18 C 0.157 3.843 19 C -0.129 4.129 20 C -0.114 4.114 21 C -0.125 4.125 22 C -0.114 4.114 23 C -0.130 4.130 24 H 0.071 0.929 25 H 0.081 0.919 26 H 0.063 0.937 27 H 0.153 0.847 28 H 0.400 0.600 29 H 0.273 0.727 30 H 0.100 0.900 31 H 0.067 0.933 32 H 0.084 0.916 33 H 0.069 0.931 34 H 0.062 0.938 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.069 0.931 38 H 0.062 0.938 39 H 0.084 0.916 40 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.500 -11.366 0.070 20.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.131 4.131 3 C -0.218 4.218 4 C -0.140 4.140 5 C 0.296 3.704 6 O -0.479 6.479 7 N -0.171 5.171 8 C -0.429 4.429 9 H 0.124 0.876 10 C -0.179 4.179 11 N -0.531 5.531 12 Si 0.760 3.240 13 H -0.197 1.197 14 H -0.209 1.209 15 H -0.197 1.197 16 N -0.105 5.105 17 N -0.076 5.076 18 C 0.056 3.944 19 C -0.167 4.167 20 C -0.152 4.152 21 C -0.162 4.162 22 C -0.152 4.152 23 C -0.168 4.168 24 H 0.090 0.910 25 H 0.100 0.900 26 H 0.081 0.919 27 H 0.171 0.829 28 H 0.235 0.765 29 H 0.083 0.917 30 H 0.118 0.882 31 H 0.086 0.914 32 H 0.103 0.897 33 H 0.088 0.912 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.088 0.912 38 H 0.081 0.919 39 H 0.103 0.897 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -15.741 -11.795 0.070 19.670 hybrid contribution 0.350 0.583 -0.002 0.679 sum -15.391 -11.213 0.068 19.043 Atomic orbital electron populations 1.20254 0.87652 1.03098 1.02591 1.21241 0.94800 0.87274 1.09807 1.21443 0.91190 0.98889 1.10237 1.22457 0.95942 0.89137 1.06425 1.16528 0.81492 0.86476 0.85911 1.90597 1.86289 1.12898 1.58131 1.41789 1.04081 1.09975 1.61214 1.19762 0.82629 0.93150 1.47324 0.87624 1.25355 0.99666 0.95865 0.97006 1.69630 1.26921 1.07576 1.48962 0.85873 0.79910 0.78984 0.79198 1.19735 1.20914 1.19739 1.73602 1.00977 1.15314 1.20611 1.45500 1.03041 1.06193 1.52851 1.21468 0.98902 0.76625 0.97423 1.21892 1.03269 0.95367 0.96214 1.21492 1.00596 0.94589 0.98494 1.21604 1.01593 0.98816 0.94219 1.21492 1.00559 0.94600 0.98519 1.21902 1.03335 0.95369 0.96202 0.90985 0.90002 0.91852 0.82904 0.76527 0.91658 0.88227 0.91406 0.89732 0.91216 0.91913 0.91282 0.91745 0.91219 0.91920 0.89722 0.91417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.79 9.92 36.01 0.36 -0.43 16 2 C -0.01 -0.11 6.92 -82.21 -0.57 -0.68 16 3 C -0.19 -3.66 10.73 -39.35 -0.42 -4.08 16 4 C 0.02 0.49 7.13 -82.77 -0.59 -0.10 16 5 C 0.51 13.96 7.77 -12.44 -0.10 13.86 16 6 O -0.59 -17.73 16.50 5.27 0.09 -17.65 16 7 N -0.54 -15.13 5.28 -11.90 -0.06 -15.20 16 8 C -0.30 -8.75 9.68 -14.99 -0.15 -8.90 16 9 H 0.11 3.18 7.15 -52.49 -0.38 2.80 16 10 C 0.02 0.67 5.50 -17.45 -0.10 0.57 16 11 N -0.89 -25.14 13.05 55.50 0.72 -24.42 16 12 Si 0.93 21.46 29.55 -169.99 -5.02 16.44 16 13 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 14 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 15 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 16 N -0.27 -5.59 11.33 33.41 0.38 -5.21 16 17 N -0.29 -4.69 3.04 -50.66 -0.15 -4.84 16 18 C 0.16 1.87 2.82 -67.93 -0.19 1.68 16 19 C -0.13 -1.48 5.38 -26.73 -0.14 -1.63 16 20 C -0.11 -0.96 5.92 -26.73 -0.16 -1.12 16 21 C -0.12 -1.04 5.92 -26.73 -0.16 -1.20 16 22 C -0.11 -0.96 5.92 -26.73 -0.16 -1.12 16 23 C -0.13 -1.49 5.37 -26.73 -0.14 -1.63 16 24 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.06 0.52 7.03 -51.93 -0.37 0.15 16 27 H 0.15 2.79 8.06 -52.49 -0.42 2.37 16 28 H 0.40 11.14 7.62 -40.82 -0.31 10.83 16 29 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 30 H 0.10 0.93 6.55 -51.93 -0.34 0.59 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 331.48 15.07 5.00 5.00 Total: -1.00 -33.55 331.48 -7.59 -41.14 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: -6.02 Total: 9.51 kcal Atomic # 6 Polarization: -2.26 SS G_CDS: -2.52 Total: -4.77 kcal Atomic # 7 Polarization: -50.55 SS G_CDS: 0.89 Total: -49.67 kcal Atomic # 8 Polarization: -17.73 SS G_CDS: 0.09 Total: -17.65 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -33.55 -7.59 -41.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334816699.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.807 kcal (2) G-P(sol) polarization free energy of solvation -33.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.144 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds