Wall clock time and date at job start Mon Mar 30 2020 02:03:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35349 * 126.38232 * 2 1 4 4 C 1.41542 * 105.50437 * 180.20361 * 3 2 1 5 5 C 1.47602 * 126.52570 * 179.80906 * 4 3 2 6 6 O 1.21606 * 119.99910 * 359.97438 * 5 4 3 7 7 N 1.34773 * 120.00041 * 179.97438 * 5 4 3 8 8 C 1.36912 * 119.99781 * 180.02562 * 7 5 4 9 9 H 1.08000 * 120.00200 * 359.97438 * 8 7 5 10 10 C 1.39028 * 119.99825 * 179.97438 * 8 7 5 11 11 N 1.31380 * 120.00115 * 0.02562 * 10 8 7 12 12 Si 1.86797 * 119.99884 * 179.97438 * 10 8 7 13 13 H 1.48499 * 109.47038 * 60.00381 * 12 10 8 14 14 H 1.48504 * 109.46906 * 180.02562 * 12 10 8 15 15 H 1.48503 * 109.47246 * 300.00281 * 12 10 8 16 16 N 1.31864 * 106.95103 * 359.78172 * 4 3 2 17 17 N 1.28472 * 110.06167 * 359.97438 * 16 4 3 18 18 C 1.46500 * 124.87609 * 179.97438 * 17 16 4 19 19 C 1.52997 * 109.47473 * 60.02593 * 18 17 16 20 20 C 1.53000 * 109.47060 * 180.02562 * 19 18 17 21 21 C 1.52996 * 109.47328 * 60.00126 * 20 19 18 22 22 C 1.53002 * 109.46891 * 299.99597 * 21 20 19 23 23 C 1.52997 * 109.46978 * 60.00410 * 22 21 20 24 24 H 1.08996 * 109.47376 * 270.16848 * 1 2 3 25 25 H 1.09007 * 109.47148 * 30.17039 * 1 2 3 26 26 H 1.09001 * 109.47274 * 150.16894 * 1 2 3 27 27 H 1.07999 * 127.24387 * 359.97438 * 3 2 1 28 28 H 0.96998 * 120.00256 * 0.02562 * 7 5 4 29 29 H 0.96996 * 120.00316 * 179.97438 * 11 10 8 30 30 H 1.08998 * 109.46845 * 180.02562 * 18 17 16 31 31 H 1.09002 * 109.47153 * 59.99757 * 19 18 17 32 32 H 1.09001 * 109.46832 * 299.99948 * 19 18 17 33 33 H 1.09004 * 109.46724 * 180.02562 * 20 19 18 34 34 H 1.09001 * 109.47194 * 299.99650 * 20 19 18 35 35 H 1.08992 * 109.47554 * 59.99639 * 21 20 19 36 36 H 1.09004 * 109.47108 * 179.97438 * 21 20 19 37 37 H 1.09002 * 109.47097 * 180.02562 * 22 21 20 38 38 H 1.09001 * 109.47142 * 300.00176 * 22 21 20 39 39 H 1.09001 * 109.47375 * 59.99908 * 23 22 21 40 40 H 1.09000 * 109.47140 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3098 1.0897 0.0000 4 6 3.6323 0.5852 -0.0048 5 6 4.8758 1.3804 -0.0107 6 8 4.8207 2.5952 -0.0122 7 7 6.0723 0.7601 -0.0144 8 6 7.2258 1.4977 -0.0193 9 1 7.1768 2.5766 -0.0206 10 6 8.4600 0.8579 -0.0225 11 7 8.5196 -0.4546 -0.0215 12 14 10.0337 1.8642 -0.0299 13 1 10.0779 2.7227 1.1810 14 1 11.2050 0.9514 -0.0331 15 1 10.0693 2.7186 -1.2440 16 7 3.5420 -0.7303 -0.0026 17 7 2.3079 -1.0873 0.0037 18 6 1.8372 -2.4746 0.0073 19 6 2.3618 -3.1880 1.2551 20 6 1.8707 -4.6370 1.2584 21 6 2.3849 -5.3527 0.0078 22 6 1.8603 -4.6394 -1.2400 23 6 2.3514 -3.1904 -1.2434 24 1 -0.3634 0.0030 1.0276 25 1 -0.3634 0.8885 -0.5165 26 1 -0.3634 -0.8915 -0.5112 27 1 2.0054 2.1259 -0.0004 28 1 6.1163 -0.2089 -0.0136 29 1 9.3807 -0.9010 -0.0241 30 1 0.7474 -2.4885 0.0121 31 1 1.9959 -2.6778 2.1461 32 1 3.4517 -3.1741 1.2503 33 1 2.2441 -5.1451 2.1476 34 1 0.7808 -4.6513 1.2630 35 1 3.4747 -5.3385 0.0032 36 1 2.0354 -6.3852 0.0105 37 1 2.2262 -5.1496 -2.1310 38 1 0.7704 -4.6537 -1.2354 39 1 3.4413 -3.1762 -1.2480 40 1 1.9780 -2.6824 -2.1326 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334816699.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:04 Heat of formation + Delta-G solvation = -8.770122 kcal Electronic energy + Delta-G solvation = -21618.068527 eV Core-core repulsion = 18432.362636 eV Total energy + Delta-G solvation = -3185.705892 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.62971 -39.97961 -39.19137 -36.08666 -34.20720 -33.57609 -33.18432 -31.81455 -30.14464 -27.98088 -27.25613 -24.90369 -23.63579 -23.02551 -21.76329 -20.76359 -20.26490 -19.79970 -17.98299 -17.49609 -16.89947 -16.70969 -16.03207 -15.78074 -15.36633 -15.31863 -15.02876 -14.88414 -14.62469 -14.02741 -13.83290 -13.75235 -13.54597 -13.32987 -13.21931 -13.05901 -12.94396 -12.51159 -12.31228 -12.13298 -12.12890 -11.66506 -11.60241 -11.53188 -11.30354 -11.24482 -10.71197 -10.15942 -9.90400 -9.79463 -8.54433 -6.02723 0.73166 1.20791 1.38985 1.48441 1.52349 1.60971 2.26849 2.50199 3.10884 3.25838 3.38080 3.62962 3.75313 3.81061 3.93377 4.14306 4.17283 4.18607 4.25552 4.43363 4.50244 4.55458 4.63923 4.76974 4.80814 4.87501 5.00169 5.00639 5.10510 5.15169 5.16649 5.18382 5.25662 5.32138 5.33174 5.48097 5.51849 5.90426 6.07915 6.47169 6.96801 7.08315 7.45545 7.97540 8.63104 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018236 B = 0.004817 C = 0.003999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.030420 B = 5811.207481 C = 7000.148846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.021 3.979 3 C -0.216 4.216 4 C -0.023 4.023 5 C 0.506 3.494 6 O -0.631 6.631 7 N -0.546 5.546 8 C -0.343 4.343 9 H 0.088 0.912 10 C -0.012 4.012 11 N -0.915 5.915 12 Si 1.006 2.994 13 H -0.267 1.267 14 H -0.266 1.266 15 H -0.267 1.267 16 N -0.288 5.288 17 N -0.276 5.276 18 C 0.146 3.854 19 C -0.127 4.127 20 C -0.106 4.106 21 C -0.126 4.126 22 C -0.106 4.106 23 C -0.128 4.128 24 H 0.095 0.905 25 H 0.096 0.904 26 H 0.095 0.905 27 H 0.155 0.845 28 H 0.398 0.602 29 H 0.282 0.718 30 H 0.146 0.854 31 H 0.066 0.934 32 H 0.045 0.955 33 H 0.073 0.927 34 H 0.093 0.907 35 H 0.044 0.956 36 H 0.087 0.913 37 H 0.073 0.927 38 H 0.093 0.907 39 H 0.045 0.955 40 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.181 -13.282 0.078 23.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.104 4.104 3 C -0.245 4.245 4 C -0.182 4.182 5 C 0.293 3.707 6 O -0.518 6.518 7 N -0.180 5.180 8 C -0.472 4.472 9 H 0.106 0.894 10 C -0.213 4.213 11 N -0.554 5.554 12 Si 0.827 3.173 13 H -0.192 1.192 14 H -0.190 1.190 15 H -0.192 1.192 16 N -0.124 5.124 17 N -0.064 5.064 18 C 0.048 3.952 19 C -0.166 4.166 20 C -0.144 4.144 21 C -0.164 4.164 22 C -0.144 4.144 23 C -0.167 4.167 24 H 0.114 0.886 25 H 0.114 0.886 26 H 0.113 0.887 27 H 0.173 0.827 28 H 0.232 0.768 29 H 0.091 0.909 30 H 0.163 0.837 31 H 0.085 0.915 32 H 0.064 0.936 33 H 0.092 0.908 34 H 0.111 0.889 35 H 0.063 0.937 36 H 0.106 0.894 37 H 0.092 0.908 38 H 0.111 0.889 39 H 0.064 0.936 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -18.423 -13.746 0.078 22.986 hybrid contribution 1.048 1.052 -0.002 1.485 sum -17.375 -12.694 0.076 21.518 Atomic orbital electron populations 1.20534 0.82716 1.05445 1.04780 1.22009 0.97273 0.85430 1.05686 1.21621 0.90221 1.00411 1.12204 1.21969 0.95405 0.90266 1.10572 1.17180 0.82619 0.86578 0.84287 1.90528 1.87244 1.14580 1.59457 1.41842 1.04484 1.09676 1.62011 1.19846 0.84076 0.92714 1.50574 0.89446 1.26326 1.02507 0.97117 0.95334 1.69712 1.28320 1.08939 1.48469 0.84820 0.75480 0.77604 0.79358 1.19167 1.19010 1.19179 1.73510 1.03736 1.14265 1.20877 1.46056 1.01883 1.08287 1.50215 1.22052 1.01252 0.74181 0.97759 1.21877 1.00921 0.97835 0.95950 1.21486 1.02289 0.91889 0.98687 1.21629 1.00260 1.00210 0.94273 1.21486 1.02256 0.91900 0.98710 1.21887 1.00986 0.97838 0.95939 0.88641 0.88550 0.88676 0.82707 0.76817 0.90851 0.83696 0.91489 0.93629 0.90792 0.88879 0.93709 0.89396 0.90790 0.88870 0.93625 0.91476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.19 9.92 71.24 0.71 -0.48 16 2 C 0.02 0.62 6.92 41.40 0.29 0.91 16 3 C -0.22 -8.50 10.73 22.42 0.24 -8.26 16 4 C -0.02 -1.13 7.13 42.43 0.30 -0.82 16 5 C 0.51 29.62 7.77 86.72 0.67 30.30 16 6 O -0.63 -40.17 16.50 -4.05 -0.07 -40.24 16 7 N -0.55 -32.98 5.28 -309.83 -1.63 -34.62 16 8 C -0.34 -21.24 9.68 84.09 0.81 -20.43 16 9 H 0.09 5.61 7.15 -2.91 -0.02 5.59 16 10 C -0.01 -0.69 5.50 84.95 0.47 -0.22 16 11 N -0.91 -53.01 13.05 21.68 0.28 -52.72 16 12 Si 1.01 44.68 29.55 68.60 2.03 46.70 16 13 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 14 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 15 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 16 N -0.29 -12.38 11.33 -48.20 -0.55 -12.93 16 17 N -0.28 -8.74 3.04 -314.20 -0.96 -9.70 16 18 C 0.15 3.13 2.82 44.99 0.13 3.26 16 19 C -0.13 -2.76 5.38 30.59 0.16 -2.59 16 20 C -0.11 -1.45 5.92 30.59 0.18 -1.27 16 21 C -0.13 -1.79 5.92 30.59 0.18 -1.61 16 22 C -0.11 -1.45 5.92 30.59 0.18 -1.27 16 23 C -0.13 -2.77 5.37 30.60 0.16 -2.60 16 24 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 25 H 0.10 1.31 8.14 -2.38 -0.02 1.29 16 26 H 0.09 0.93 7.03 -2.39 -0.02 0.92 16 27 H 0.16 5.82 8.06 -2.91 -0.02 5.80 16 28 H 0.40 23.78 7.62 -92.71 -0.71 23.07 16 29 H 0.28 15.04 8.31 -92.71 -0.77 14.27 16 30 H 0.15 1.87 6.55 -2.39 -0.02 1.85 16 31 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.09 0.89 8.14 -2.38 -0.02 0.87 16 37 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -79.94 331.48 3.93 -76.01 By element: Atomic # 1 Polarization: 32.24 SS G_CDS: 0.33 Total: 32.58 kcal Atomic # 6 Polarization: -9.58 SS G_CDS: 4.49 Total: -5.09 kcal Atomic # 7 Polarization: -107.11 SS G_CDS: -2.85 Total: -109.97 kcal Atomic # 8 Polarization: -40.17 SS G_CDS: -0.07 Total: -40.24 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.70 kcal Total: -79.94 3.93 -76.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334816699.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.237 kcal (2) G-P(sol) polarization free energy of solvation -79.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds