Wall clock time and date at job start Mon Mar 30 2020 02:26:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38774 * 119.90022 * 2 1 4 4 N 1.31774 * 120.12204 * 179.97438 * 3 2 1 5 5 C 1.33028 * 119.92851 * 0.02562 * 4 3 2 6 6 C 1.48146 * 120.09661 * 180.02562 * 5 4 3 7 7 O 1.21523 * 120.00021 * 180.02562 * 6 5 4 8 8 N 1.34777 * 120.00016 * 359.72526 * 6 5 4 9 9 C 1.46504 * 119.99858 * 180.27150 * 8 6 5 10 10 C 1.53004 * 109.46929 * 180.02562 * 9 8 6 11 11 C 1.53001 * 109.46866 * 299.99940 * 10 9 8 12 12 C 1.52994 * 109.47172 * 59.99877 * 10 9 8 13 13 C 1.53000 * 109.46988 * 180.02562 * 10 9 8 14 14 C 1.50701 * 109.46983 * 179.97438 * 13 10 9 15 15 H 1.07998 * 120.00145 * 359.97438 * 14 13 10 16 16 C 1.37872 * 119.99634 * 179.97438 * 14 13 10 17 17 N 1.31520 * 119.99520 * 179.97438 * 16 14 13 18 18 Si 1.86800 * 120.00323 * 0.02562 * 16 14 13 19 19 H 1.48496 * 109.47145 * 89.99842 * 18 16 14 20 20 H 1.48507 * 109.47078 * 209.99680 * 18 16 14 21 21 H 1.48503 * 109.46936 * 329.99407 * 18 16 14 22 22 C 1.39403 * 119.80642 * 0.27989 * 5 4 3 23 23 N 1.32100 * 119.90912 * 179.97438 * 2 1 3 24 24 H 1.09008 * 109.47159 * 90.00399 * 1 2 3 25 25 H 1.09003 * 109.47014 * 209.99547 * 1 2 3 26 26 H 1.08997 * 109.47440 * 330.00400 * 1 2 3 27 27 H 1.08004 * 119.94317 * 359.97438 * 3 2 1 28 28 H 0.97001 * 119.99727 * 0.28049 * 8 6 5 29 29 H 1.08998 * 109.47306 * 300.00567 * 9 8 6 30 30 H 1.08997 * 109.46860 * 60.00391 * 9 8 6 31 31 H 1.09007 * 109.47177 * 60.00009 * 11 10 9 32 32 H 1.08994 * 109.47297 * 180.02562 * 11 10 9 33 33 H 1.08997 * 109.47361 * 300.00353 * 11 10 9 34 34 H 1.09006 * 109.47135 * 60.00046 * 12 10 9 35 35 H 1.09001 * 109.47144 * 179.97438 * 12 10 9 36 36 H 1.08998 * 109.47717 * 300.00195 * 12 10 9 37 37 H 1.08998 * 109.46983 * 299.99930 * 13 10 9 38 38 H 1.08997 * 109.47123 * 59.99717 * 13 10 9 39 39 H 0.97003 * 119.99577 * 179.97438 * 17 16 14 40 40 H 1.08002 * 120.05978 * 179.70746 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1988 1.2030 0.0000 4 7 3.5165 1.2081 0.0005 5 6 4.1847 0.0578 0.0005 6 6 5.6661 0.0592 0.0017 7 8 6.2747 -0.9926 0.0012 8 7 6.3389 1.2270 -0.0029 9 6 7.8039 1.2283 -0.0078 10 6 8.3126 2.6713 -0.0117 11 6 7.7977 3.3902 -1.2604 12 6 7.8061 3.3940 1.2381 13 6 9.8426 2.6727 -0.0174 14 6 10.3436 4.0940 -0.0219 15 1 9.6410 4.9143 -0.0212 16 6 11.6989 4.3471 -0.0269 17 7 12.1361 5.5875 -0.0313 18 14 12.9141 2.9284 -0.0289 19 1 13.2313 2.5503 -1.4294 20 1 14.1594 3.3424 0.6662 21 1 12.3176 1.7648 0.6751 22 6 3.4867 -1.1489 -0.0059 23 7 2.1657 -1.1451 0.0005 24 1 -0.3634 -0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5137 27 1 1.6562 2.1369 -0.0004 28 1 5.8531 2.0666 -0.0028 29 1 8.1707 0.7165 0.8819 30 1 8.1647 0.7131 -0.8980 31 1 6.7077 3.3891 -1.2567 32 1 8.1604 4.4180 -1.2634 33 1 8.1585 2.8753 -2.1507 34 1 8.1729 2.8819 2.1277 35 1 8.1688 4.4219 1.2355 36 1 6.7161 3.3930 1.2418 37 1 10.2097 2.1605 0.8719 38 1 10.2030 2.1580 -0.9080 39 1 13.0896 5.7656 -0.0345 40 1 4.0251 -2.0852 -0.0107 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345982992.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:08 Heat of formation + Delta-G solvation = -28.880626 kcal Electronic energy + Delta-G solvation = -21015.810399 eV Core-core repulsion = 17829.232450 eV Total energy + Delta-G solvation = -3186.577948 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.39343 -40.66758 -38.72389 -35.89126 -35.13895 -33.97183 -33.85549 -30.04949 -29.44638 -28.01159 -27.58056 -25.67907 -24.97745 -23.94638 -21.86370 -20.18917 -19.14223 -18.90916 -18.51851 -17.07317 -16.82023 -16.81323 -16.26006 -15.94901 -15.86490 -15.28228 -15.15195 -14.86965 -14.22099 -14.19346 -13.98792 -13.73744 -13.59535 -13.22670 -12.94236 -12.84720 -12.78454 -12.63675 -12.31185 -12.28683 -12.17917 -11.79249 -11.60679 -11.52655 -11.18913 -10.92972 -10.69975 -10.39766 -10.23238 -10.07634 -8.21849 -6.22086 -0.73654 -0.05537 1.36806 1.39457 1.49518 1.57154 1.94209 2.39753 2.64233 2.88773 3.01338 3.13662 3.30451 3.72353 3.88271 3.93406 4.03136 4.08581 4.14156 4.46240 4.61713 4.68143 4.73003 4.78616 4.85422 4.92771 4.99020 5.05055 5.07859 5.26688 5.30534 5.35308 5.39856 5.40908 5.53968 5.66777 5.75687 6.00674 6.34892 6.39049 6.61142 6.84787 7.01050 7.40608 8.93808 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.040060 B = 0.003346 C = 0.003158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.787844 B = 8367.239245 C = 8864.344813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.106 3.894 3 C 0.057 3.943 4 N -0.422 5.422 5 C 0.002 3.998 6 C 0.570 3.430 7 O -0.566 6.566 8 N -0.691 5.691 9 C 0.134 3.866 10 C -0.058 4.058 11 C -0.124 4.124 12 C -0.124 4.124 13 C -0.003 4.003 14 C -0.502 4.502 15 H 0.052 0.948 16 C 0.005 3.995 17 N -0.952 5.952 18 Si 0.935 3.065 19 H -0.272 1.272 20 H -0.289 1.289 21 H -0.250 1.250 22 C 0.110 3.890 23 N -0.461 5.461 24 H 0.102 0.898 25 H 0.081 0.919 26 H 0.113 0.887 27 H 0.217 0.783 28 H 0.417 0.583 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.047 0.953 33 H 0.046 0.954 34 H 0.046 0.954 35 H 0.047 0.953 36 H 0.063 0.937 37 H 0.017 0.983 38 H 0.016 0.984 39 H 0.262 0.738 40 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.235 -10.196 0.049 27.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.036 4.036 3 C -0.108 4.108 4 N -0.139 5.139 5 C -0.137 4.137 6 C 0.354 3.646 7 O -0.445 6.445 8 N -0.342 5.342 9 C 0.010 3.990 10 C -0.058 4.058 11 C -0.181 4.181 12 C -0.181 4.181 13 C -0.041 4.041 14 C -0.540 4.540 15 H 0.070 0.930 16 C -0.191 4.191 17 N -0.594 5.594 18 Si 0.760 3.240 19 H -0.197 1.197 20 H -0.215 1.215 21 H -0.174 1.174 22 C -0.049 4.049 23 N -0.177 5.177 24 H 0.121 0.879 25 H 0.100 0.900 26 H 0.132 0.868 27 H 0.234 0.766 28 H 0.255 0.745 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.082 0.918 37 H 0.036 0.964 38 H 0.034 0.966 39 H 0.071 0.929 40 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -24.544 -10.856 0.057 26.837 hybrid contribution 1.209 0.156 -0.033 1.220 sum -23.334 -10.700 0.024 25.671 Atomic orbital electron populations 1.20948 0.84143 1.05751 1.05169 1.23420 1.00747 0.89086 0.90376 1.24426 0.89199 1.01202 0.95926 1.68316 1.10734 1.28148 1.06697 1.21846 0.94696 0.91929 1.05200 1.17952 0.85927 0.84020 0.76677 1.90775 1.69373 1.32271 1.52125 1.45883 1.07517 1.08845 1.71966 1.21461 0.78516 0.97206 1.01767 1.20558 0.95928 0.92544 0.96794 1.21707 0.99699 1.00522 0.96222 1.21702 0.99726 1.00504 0.96202 1.19567 0.92455 0.95692 0.96379 1.21362 0.91858 0.92484 1.48297 0.93017 1.25838 1.00646 0.97568 0.95050 1.70048 1.14766 1.20858 1.53682 0.85886 0.78509 0.80764 0.78859 1.19705 1.21546 1.17385 1.23817 0.90429 0.99135 0.91515 1.68557 1.07762 1.30388 1.10980 0.87924 0.89989 0.86846 0.76611 0.74466 0.91841 0.91765 0.91853 0.93384 0.93450 0.93482 0.93375 0.91841 0.96435 0.96587 0.92871 0.80132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.49 10.19 71.24 0.73 0.23 16 2 C 0.11 1.44 6.79 42.65 0.29 1.73 16 3 C 0.06 0.76 10.88 84.83 0.92 1.68 16 4 N -0.42 -8.70 9.71 -184.33 -1.79 -10.49 16 5 C 0.00 0.04 6.75 41.88 0.28 0.33 16 6 C 0.57 16.85 7.81 86.88 0.68 17.53 16 7 O -0.57 -19.92 16.35 -3.79 -0.06 -19.99 16 8 N -0.69 -19.62 4.95 -465.67 -2.30 -21.92 16 9 C 0.13 4.36 4.56 86.38 0.39 4.75 16 10 C -0.06 -2.09 0.54 -52.18 -0.03 -2.11 16 11 C -0.12 -4.27 8.05 71.98 0.58 -3.69 16 12 C -0.12 -4.27 8.05 71.98 0.58 -3.69 16 13 C 0.00 -0.14 3.11 29.85 0.09 -0.04 16 14 C -0.50 -27.29 8.20 25.60 0.21 -27.08 16 15 H 0.05 3.03 5.92 -2.91 -0.02 3.02 16 16 C 0.01 0.29 5.47 84.65 0.46 0.76 16 17 N -0.95 -58.84 13.96 21.45 0.30 -58.54 16 18 Si 0.93 44.37 27.47 68.60 1.88 46.26 16 19 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 20 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 21 H -0.25 -11.16 6.54 99.48 0.65 -10.51 16 22 C 0.11 2.46 10.77 84.93 0.91 3.37 16 23 N -0.46 -9.06 10.41 -182.22 -1.90 -10.96 16 24 H 0.10 0.27 8.14 -2.38 -0.02 0.25 16 25 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 26 H 0.11 -0.07 8.08 -2.39 -0.02 -0.09 16 27 H 0.22 0.97 8.06 -2.91 -0.02 0.94 16 28 H 0.42 10.63 5.51 -92.71 -0.51 10.12 16 29 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 30 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 31 H 0.06 1.77 6.86 -2.38 -0.02 1.75 16 32 H 0.05 1.90 6.61 -2.39 -0.02 1.88 16 33 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.05 1.60 8.14 -2.38 -0.02 1.58 16 35 H 0.05 1.90 6.62 -2.39 -0.02 1.89 16 36 H 0.06 1.78 6.86 -2.39 -0.02 1.76 16 37 H 0.02 0.79 7.20 -2.39 -0.02 0.77 16 38 H 0.02 0.71 7.57 -2.39 -0.02 0.69 16 39 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 40 H 0.18 3.90 7.65 -2.91 -0.02 3.88 16 Total: -1.00 -70.57 328.90 2.72 -67.85 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: 0.48 Total: 14.02 kcal Atomic # 6 Polarization: -12.34 SS G_CDS: 6.11 Total: -6.23 kcal Atomic # 7 Polarization: -96.21 SS G_CDS: -5.69 Total: -101.91 kcal Atomic # 8 Polarization: -19.92 SS G_CDS: -0.06 Total: -19.99 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 1.88 Total: 46.26 kcal Total: -70.57 2.72 -67.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345982992.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.967 kcal (2) G-P(sol) polarization free energy of solvation -70.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds