Wall clock time and date at job start Mon Mar 30 2020 02:31:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.34128 * 125.98935 * 2 1 4 4 C 1.30500 * 109.25492 * 179.97438 * 3 2 1 5 5 N 1.35039 * 108.70080 * 359.77483 * 4 3 2 6 6 H 0.97002 * 126.40444 * 180.26685 * 5 4 3 7 7 C 1.34667 * 125.99095 * 179.97438 * 2 1 3 8 8 C 1.50700 * 126.58853 * 359.96935 * 7 2 1 9 9 C 1.50694 * 109.47647 * 84.99735 * 8 7 2 10 10 O 1.21279 * 119.99580 * 359.97438 * 9 8 7 11 11 N 1.34781 * 120.00287 * 180.02562 * 9 8 7 12 12 C 1.46504 * 119.99832 * 180.02562 * 11 9 8 13 13 C 1.50704 * 109.46773 * 269.99817 * 12 11 9 14 14 H 1.07998 * 119.99721 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99850 * 180.02562 * 13 12 11 16 16 N 1.31513 * 119.99692 * 0.02562 * 15 13 12 17 17 Si 1.86794 * 119.99728 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47060 * 90.00267 * 17 15 13 19 19 H 1.48504 * 109.47035 * 209.99814 * 17 15 13 20 20 H 1.48498 * 109.47691 * 329.99852 * 17 15 13 21 21 C 1.46499 * 119.99786 * 359.97438 * 11 9 8 22 22 C 1.53000 * 109.46840 * 90.00416 * 21 11 9 23 23 C 1.53003 * 117.49371 * 243.61805 * 22 21 11 24 24 C 1.53001 * 117.49608 * 174.99880 * 22 21 11 25 25 H 1.09003 * 109.47291 * 270.00176 * 1 2 3 26 26 H 1.09008 * 109.47298 * 30.00009 * 1 2 3 27 27 H 1.09002 * 109.47699 * 149.99992 * 1 2 3 28 28 H 1.07995 * 125.64961 * 180.02562 * 4 3 2 29 29 H 1.09000 * 109.47144 * 324.99545 * 8 7 2 30 30 H 1.09005 * 109.47036 * 204.99918 * 8 7 2 31 31 H 1.08992 * 109.47334 * 29.99480 * 12 11 9 32 32 H 1.08994 * 109.46680 * 150.00103 * 12 11 9 33 33 H 0.96996 * 119.99637 * 179.97438 * 16 15 13 34 34 H 1.09002 * 109.47391 * 330.00086 * 21 11 9 35 35 H 1.09001 * 109.46813 * 210.00142 * 21 11 9 36 36 H 1.08995 * 115.55630 * 29.32490 * 22 21 11 37 37 H 1.08998 * 117.50656 * 0.02562 * 23 22 21 38 38 H 1.09001 * 117.49674 * 145.02590 * 23 22 21 39 39 H 1.09003 * 117.49710 * 214.97494 * 24 22 21 40 40 H 1.08998 * 117.50185 * 359.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2951 1.0853 0.0000 4 6 3.5449 0.7095 0.0006 5 7 3.5912 -0.6401 0.0059 6 1 4.3912 -1.1886 0.0112 7 6 2.2983 -1.0896 0.0005 8 6 1.8472 -2.5275 0.0018 9 6 1.5779 -2.9709 -1.4131 10 8 1.7363 -2.1954 -2.3320 11 7 1.1601 -4.2288 -1.6572 12 6 0.8989 -4.6599 -3.0328 13 6 -0.5410 -4.3832 -3.3810 14 1 -1.1958 -3.9310 -2.6509 15 6 -1.0223 -4.7073 -4.6318 16 7 -0.2249 -5.2584 -5.5206 17 14 -2.8072 -4.3650 -5.0631 18 1 -2.9236 -3.0033 -5.6440 19 1 -3.2783 -5.3671 -6.0526 20 1 -3.6387 -4.4524 -3.8359 21 6 0.9683 -5.1653 -0.5470 22 6 -0.4694 -5.0605 -0.0342 23 6 -0.6734 -4.5740 1.4020 24 6 -0.9053 -6.0454 1.0525 25 1 -0.3634 0.0000 1.0277 26 1 -0.3634 0.8900 -0.5139 27 1 -0.3634 -0.8900 -0.5138 28 1 4.4003 1.3687 0.0011 29 1 0.9355 -2.6217 0.5918 30 1 2.6273 -3.1527 0.4362 31 1 1.5493 -4.1124 -3.7148 32 1 1.0955 -5.7283 -3.1221 33 1 -0.5636 -5.4867 -6.4004 34 1 1.6603 -4.9203 0.2587 35 1 1.1578 -6.1817 -0.8923 36 1 -1.2129 -4.7677 -0.7755 37 1 0.2165 -4.3281 1.9814 38 1 -1.5512 -3.9608 1.6057 39 1 -1.9356 -6.4002 1.0263 40 1 -0.1680 -6.7682 1.4018 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346306666.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:43 Heat of formation + Delta-G solvation = 41.069678 kcal Electronic energy + Delta-G solvation = -22007.720591 eV Core-core repulsion = 18824.175915 eV Total energy + Delta-G solvation = -3183.544676 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.90822 -39.13589 -37.08248 -34.42110 -32.90060 -32.73547 -32.19845 -28.99844 -27.62192 -26.28496 -25.35050 -22.79384 -22.20907 -21.46308 -20.57236 -19.57550 -18.56944 -17.42464 -16.72240 -16.48610 -15.35626 -15.13944 -14.94204 -14.51080 -14.29437 -14.13054 -13.55425 -12.98745 -12.78803 -12.58195 -12.51705 -12.38687 -12.23650 -11.83681 -11.74405 -11.36343 -11.33005 -11.20249 -10.92908 -10.61778 -10.38233 -9.90585 -9.80489 -9.71838 -9.65744 -9.55562 -8.96310 -8.42831 -7.95777 -7.71304 -6.04341 -4.08148 2.19558 3.23260 3.31535 3.32578 3.36461 3.38091 3.42091 3.88137 4.10241 4.44815 4.72455 4.94170 4.96796 5.05951 5.13068 5.17741 5.29945 5.40571 5.45996 5.52125 5.58549 5.66646 5.76066 5.91647 5.97237 5.97622 6.09344 6.23182 6.25769 6.29089 6.40438 6.68733 6.97162 7.05241 7.41657 7.52475 7.55096 7.92290 8.23037 8.26806 8.37737 8.89731 9.07314 9.56635 11.04034 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014785 B = 0.006012 C = 0.005148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1893.333543 B = 4655.887594 C = 5437.328153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.018 3.982 3 N -0.493 5.493 4 C 0.179 3.821 5 N -0.564 5.564 6 H 0.416 0.584 7 C 0.005 3.995 8 C -0.069 4.069 9 C 0.507 3.493 10 O -0.527 6.527 11 N -0.596 5.596 12 C 0.247 3.753 13 C -0.520 4.520 14 H 0.059 0.941 15 C 0.061 3.939 16 N -0.896 5.896 17 Si 0.895 3.105 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.274 1.274 21 C 0.145 3.855 22 C -0.161 4.161 23 C -0.190 4.190 24 C -0.179 4.179 25 H 0.063 0.937 26 H 0.068 0.932 27 H 0.071 0.929 28 H 0.205 0.795 29 H 0.113 0.887 30 H 0.089 0.911 31 H 0.042 0.958 32 H 0.032 0.968 33 H 0.263 0.737 34 H 0.063 0.937 35 H 0.080 0.920 36 H 0.124 0.876 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.439 1.683 15.933 16.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.111 4.111 3 N -0.213 5.213 4 C -0.104 4.104 5 N -0.168 5.168 6 H 0.253 0.747 7 C -0.111 4.111 8 C -0.110 4.110 9 C 0.292 3.708 10 O -0.403 6.403 11 N -0.328 5.328 12 C 0.128 3.872 13 C -0.559 4.559 14 H 0.077 0.923 15 C -0.141 4.141 16 N -0.535 5.535 17 Si 0.723 3.277 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.199 1.199 21 C 0.021 3.979 22 C -0.181 4.181 23 C -0.227 4.227 24 C -0.216 4.216 25 H 0.081 0.919 26 H 0.087 0.913 27 H 0.089 0.911 28 H 0.221 0.779 29 H 0.131 0.869 30 H 0.107 0.893 31 H 0.060 0.940 32 H 0.050 0.950 33 H 0.072 0.928 34 H 0.081 0.919 35 H 0.099 0.901 36 H 0.142 0.858 37 H 0.108 0.892 38 H 0.109 0.891 39 H 0.109 0.891 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 5.212 2.853 15.217 16.336 hybrid contribution -0.256 -1.013 -0.347 1.101 sum 4.956 1.840 14.870 15.782 Atomic orbital electron populations 1.20033 0.87896 1.03225 1.01427 1.20378 0.96338 0.87732 1.06661 1.70123 1.00566 1.30833 1.19792 1.24758 0.97291 0.81898 1.06473 1.43089 1.07942 1.08622 1.57117 0.74717 1.20318 0.83840 0.95795 1.11141 1.20211 1.03197 0.90023 0.97571 1.20120 0.78423 0.82355 0.89864 1.90715 1.51826 1.51889 1.45909 1.48197 1.64749 1.10495 1.09324 1.19300 0.96935 0.95237 0.75752 1.21412 0.95407 1.40537 0.98561 0.92292 1.24926 0.97926 0.95118 0.96136 1.69926 1.35429 1.42400 1.05728 0.86543 0.84782 0.78131 0.78238 1.20571 1.21220 1.19913 1.21006 0.93211 0.94581 0.89131 1.23070 0.99847 1.03354 0.91782 1.23052 1.03043 0.97398 0.99169 1.22868 1.02215 0.92413 1.04133 0.91857 0.91281 0.91050 0.77871 0.86921 0.89304 0.93999 0.95042 0.92776 0.91855 0.90147 0.85823 0.89217 0.89110 0.89058 0.89122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.06 10.13 36.00 0.36 -0.69 16 2 C 0.02 0.30 7.09 -82.86 -0.59 -0.29 16 3 N -0.49 -8.34 11.25 -10.88 -0.12 -8.47 16 4 C 0.18 2.36 13.04 -90.38 -1.18 1.18 16 5 N -0.56 -7.17 6.15 -10.30 -0.06 -7.24 16 6 H 0.42 3.81 8.96 -40.82 -0.37 3.44 16 7 C 0.00 0.07 5.73 -81.60 -0.47 -0.40 16 8 C -0.07 -0.99 4.36 -29.04 -0.13 -1.12 16 9 C 0.51 10.10 7.67 -10.99 -0.08 10.01 16 10 O -0.53 -13.20 15.61 5.56 0.09 -13.11 16 11 N -0.60 -11.89 2.46 -175.06 -0.43 -12.32 16 12 C 0.25 6.24 5.20 -5.19 -0.03 6.22 16 13 C -0.52 -14.28 9.03 -34.44 -0.31 -14.59 16 14 H 0.06 1.60 6.66 -52.49 -0.35 1.25 16 15 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 16 N -0.90 -26.40 13.29 55.43 0.74 -25.67 16 17 Si 0.90 21.76 29.54 -169.99 -5.02 16.74 16 18 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 19 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 21 C 0.15 2.18 5.54 -4.04 -0.02 2.16 16 22 C -0.16 -2.37 5.95 -90.62 -0.54 -2.90 16 23 C -0.19 -2.17 9.18 -26.73 -0.25 -2.42 16 24 C -0.18 -2.10 10.25 -26.73 -0.27 -2.37 16 25 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.07 1.07 8.14 -51.92 -0.42 0.65 16 27 H 0.07 1.19 7.89 -51.93 -0.41 0.78 16 28 H 0.20 1.71 8.06 -52.49 -0.42 1.29 16 29 H 0.11 1.47 6.73 -51.93 -0.35 1.12 16 30 H 0.09 0.99 7.40 -51.93 -0.38 0.61 16 31 H 0.04 1.21 7.42 -51.93 -0.39 0.83 16 32 H 0.03 0.81 7.89 -51.93 -0.41 0.40 16 33 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 34 H 0.06 0.74 6.18 -51.93 -0.32 0.42 16 35 H 0.08 1.20 7.89 -51.93 -0.41 0.79 16 36 H 0.12 2.27 6.58 -51.93 -0.34 1.93 16 37 H 0.09 0.88 7.87 -51.93 -0.41 0.47 16 38 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 39 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 LS Contribution 336.81 15.07 5.08 5.08 Total: -1.00 -35.32 336.81 -9.14 -44.46 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -5.81 Total: 4.11 kcal Atomic # 6 Polarization: 0.01 SS G_CDS: -3.60 Total: -3.59 kcal Atomic # 7 Polarization: -53.81 SS G_CDS: 0.12 Total: -53.69 kcal Atomic # 8 Polarization: -13.20 SS G_CDS: 0.09 Total: -13.11 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -35.32 -9.14 -44.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346306666.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.531 kcal (2) G-P(sol) polarization free energy of solvation -35.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.461 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds