Wall clock time and date at job start Mon Mar 30 2020 02:31:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.34128 * 125.98935 * 2 1 4 4 C 1.30500 * 109.25492 * 179.97438 * 3 2 1 5 5 N 1.35039 * 108.70080 * 359.77483 * 4 3 2 6 6 H 0.97002 * 126.40444 * 180.26685 * 5 4 3 7 7 C 1.34667 * 125.99095 * 179.97438 * 2 1 3 8 8 C 1.50700 * 126.58853 * 359.96935 * 7 2 1 9 9 C 1.50694 * 109.47647 * 84.99735 * 8 7 2 10 10 O 1.21279 * 119.99580 * 359.97438 * 9 8 7 11 11 N 1.34781 * 120.00287 * 180.02562 * 9 8 7 12 12 C 1.46504 * 119.99832 * 180.02562 * 11 9 8 13 13 C 1.50704 * 109.46773 * 269.99817 * 12 11 9 14 14 H 1.07998 * 119.99721 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99850 * 180.02562 * 13 12 11 16 16 N 1.31513 * 119.99692 * 0.02562 * 15 13 12 17 17 Si 1.86794 * 119.99728 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47060 * 90.00267 * 17 15 13 19 19 H 1.48504 * 109.47035 * 209.99814 * 17 15 13 20 20 H 1.48498 * 109.47691 * 329.99852 * 17 15 13 21 21 C 1.46499 * 119.99786 * 359.97438 * 11 9 8 22 22 C 1.53000 * 109.46840 * 90.00416 * 21 11 9 23 23 C 1.53003 * 117.49371 * 243.61805 * 22 21 11 24 24 C 1.53001 * 117.49608 * 174.99880 * 22 21 11 25 25 H 1.09003 * 109.47291 * 270.00176 * 1 2 3 26 26 H 1.09008 * 109.47298 * 30.00009 * 1 2 3 27 27 H 1.09002 * 109.47699 * 149.99992 * 1 2 3 28 28 H 1.07995 * 125.64961 * 180.02562 * 4 3 2 29 29 H 1.09000 * 109.47144 * 324.99545 * 8 7 2 30 30 H 1.09005 * 109.47036 * 204.99918 * 8 7 2 31 31 H 1.08992 * 109.47334 * 29.99480 * 12 11 9 32 32 H 1.08994 * 109.46680 * 150.00103 * 12 11 9 33 33 H 0.96996 * 119.99637 * 179.97438 * 16 15 13 34 34 H 1.09002 * 109.47391 * 330.00086 * 21 11 9 35 35 H 1.09001 * 109.46813 * 210.00142 * 21 11 9 36 36 H 1.08995 * 115.55630 * 29.32490 * 22 21 11 37 37 H 1.08998 * 117.50656 * 0.02562 * 23 22 21 38 38 H 1.09001 * 117.49674 * 145.02590 * 23 22 21 39 39 H 1.09003 * 117.49710 * 214.97494 * 24 22 21 40 40 H 1.08998 * 117.50185 * 359.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2951 1.0853 0.0000 4 6 3.5449 0.7095 0.0006 5 7 3.5912 -0.6401 0.0059 6 1 4.3912 -1.1886 0.0112 7 6 2.2983 -1.0896 0.0005 8 6 1.8472 -2.5275 0.0018 9 6 1.5779 -2.9709 -1.4131 10 8 1.7363 -2.1954 -2.3320 11 7 1.1601 -4.2288 -1.6572 12 6 0.8989 -4.6599 -3.0328 13 6 -0.5410 -4.3832 -3.3810 14 1 -1.1958 -3.9310 -2.6509 15 6 -1.0223 -4.7073 -4.6318 16 7 -0.2249 -5.2584 -5.5206 17 14 -2.8072 -4.3650 -5.0631 18 1 -2.9236 -3.0033 -5.6440 19 1 -3.2783 -5.3671 -6.0526 20 1 -3.6387 -4.4524 -3.8359 21 6 0.9683 -5.1653 -0.5470 22 6 -0.4694 -5.0605 -0.0342 23 6 -0.6734 -4.5740 1.4020 24 6 -0.9053 -6.0454 1.0525 25 1 -0.3634 0.0000 1.0277 26 1 -0.3634 0.8900 -0.5139 27 1 -0.3634 -0.8900 -0.5138 28 1 4.4003 1.3687 0.0011 29 1 0.9355 -2.6217 0.5918 30 1 2.6273 -3.1527 0.4362 31 1 1.5493 -4.1124 -3.7148 32 1 1.0955 -5.7283 -3.1221 33 1 -0.5636 -5.4867 -6.4004 34 1 1.6603 -4.9203 0.2587 35 1 1.1578 -6.1817 -0.8923 36 1 -1.2129 -4.7677 -0.7755 37 1 0.2165 -4.3281 1.9814 38 1 -1.5512 -3.9608 1.6057 39 1 -1.9356 -6.4002 1.0263 40 1 -0.1680 -6.7682 1.4018 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346306666.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:43 Heat of formation + Delta-G solvation = 18.354152 kcal Electronic energy + Delta-G solvation = -22008.705610 eV Core-core repulsion = 18824.175915 eV Total energy + Delta-G solvation = -3184.529695 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.00605 -40.66013 -38.28398 -36.08151 -34.61845 -34.00733 -33.58830 -30.47227 -29.21239 -27.64015 -26.72943 -24.66577 -23.10509 -22.58142 -21.78074 -20.80869 -19.93204 -18.67246 -18.50016 -18.09804 -17.03499 -16.51452 -16.18970 -16.00459 -15.61432 -15.38424 -14.74281 -14.41113 -14.25589 -14.13340 -13.74295 -13.71277 -13.63298 -13.27363 -13.06186 -13.04775 -12.80370 -12.63296 -12.55226 -12.20836 -12.16751 -11.57300 -11.14874 -10.94389 -10.87960 -10.74314 -10.62411 -10.49147 -9.42393 -9.11508 -8.20987 -6.32900 1.06761 1.34419 1.37768 1.46246 1.83302 2.15509 2.29821 2.36168 2.52864 3.05421 3.10195 3.65978 3.79955 3.94796 3.96753 4.09098 4.14476 4.30650 4.38072 4.42582 4.49058 4.58038 4.77693 4.83488 4.89643 4.91074 5.04046 5.06169 5.07937 5.15914 5.24612 5.28724 5.39891 5.50117 5.62108 5.83606 5.87593 6.09572 6.63224 6.73983 6.82357 7.17735 7.31558 7.51963 8.86339 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014785 B = 0.006012 C = 0.005148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1893.333543 B = 4655.887594 C = 5437.328153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C -0.014 4.014 3 N -0.537 5.537 4 C 0.193 3.807 5 N -0.555 5.555 6 H 0.433 0.567 7 C -0.010 4.010 8 C -0.050 4.050 9 C 0.501 3.499 10 O -0.590 6.590 11 N -0.598 5.598 12 C 0.262 3.738 13 C -0.527 4.527 14 H 0.055 0.945 15 C 0.006 3.994 16 N -0.930 5.930 17 Si 0.959 3.041 18 H -0.284 1.284 19 H -0.276 1.276 20 H -0.262 1.262 21 C 0.143 3.857 22 C -0.193 4.193 23 C -0.168 4.168 24 C -0.164 4.164 25 H 0.089 0.911 26 H 0.057 0.943 27 H 0.052 0.948 28 H 0.249 0.751 29 H 0.131 0.869 30 H 0.133 0.867 31 H -0.005 1.005 32 H 0.023 0.977 33 H 0.265 0.735 34 H 0.110 0.890 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.119 0.881 38 H 0.091 0.909 39 H 0.089 0.911 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.901 1.382 18.958 19.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.142 4.142 3 N -0.258 5.258 4 C -0.091 4.091 5 N -0.159 5.159 6 H 0.274 0.726 7 C -0.126 4.126 8 C -0.091 4.091 9 C 0.290 3.710 10 O -0.470 6.470 11 N -0.328 5.328 12 C 0.141 3.859 13 C -0.566 4.566 14 H 0.073 0.927 15 C -0.192 4.192 16 N -0.571 5.571 17 Si 0.784 3.216 18 H -0.210 1.210 19 H -0.201 1.201 20 H -0.186 1.186 21 C 0.021 3.979 22 C -0.213 4.213 23 C -0.205 4.205 24 C -0.202 4.202 25 H 0.107 0.893 26 H 0.077 0.923 27 H 0.071 0.929 28 H 0.265 0.735 29 H 0.149 0.851 30 H 0.151 0.849 31 H 0.013 0.987 32 H 0.041 0.959 33 H 0.074 0.926 34 H 0.127 0.873 35 H 0.096 0.904 36 H 0.095 0.905 37 H 0.137 0.863 38 H 0.110 0.890 39 H 0.108 0.892 40 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 5.680 2.505 18.299 19.323 hybrid contribution -0.341 -0.892 -1.281 1.598 sum 5.339 1.612 17.018 17.909 Atomic orbital electron populations 1.19994 0.87912 1.01700 1.02629 1.20703 0.97032 0.88705 1.07758 1.70095 1.02221 1.31547 1.21922 1.25645 0.97478 0.82519 1.03485 1.43079 1.07816 1.08810 1.56201 0.72628 1.20400 0.84817 0.95845 1.11554 1.20140 1.05442 0.90139 0.93381 1.21111 0.76795 0.81362 0.91769 1.90682 1.54416 1.53506 1.48432 1.48143 1.64383 1.11768 1.08508 1.18727 0.94936 0.93789 0.78480 1.21688 0.96370 1.39885 0.98624 0.92672 1.25788 1.02215 0.95028 0.96166 1.70041 1.37346 1.43544 1.06137 0.85547 0.79948 0.77686 0.78464 1.21038 1.20101 1.18563 1.21306 0.94748 0.93368 0.88497 1.22746 0.98338 1.07552 0.92652 1.23185 1.04236 0.97068 0.95964 1.22977 1.02736 0.93118 1.01358 0.89253 0.92348 0.92923 0.73540 0.85126 0.84926 0.98726 0.95930 0.92626 0.87253 0.90441 0.90470 0.86265 0.89013 0.89232 0.86824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.01 10.13 71.23 0.72 -1.29 16 2 C -0.01 -0.46 7.09 41.39 0.29 -0.17 16 3 N -0.54 -17.62 11.25 -188.33 -2.12 -19.73 16 4 C 0.19 4.60 13.04 180.26 2.35 6.95 16 5 N -0.55 -12.65 6.15 -186.50 -1.15 -13.80 16 6 H 0.43 6.52 8.96 -92.71 -0.83 5.69 16 7 C -0.01 -0.29 5.73 40.95 0.23 -0.05 16 8 C -0.05 -1.32 4.36 29.10 0.13 -1.19 16 9 C 0.50 19.98 7.67 87.65 0.67 20.65 16 10 O -0.59 -30.64 15.61 -3.02 -0.05 -30.69 16 11 N -0.60 -24.09 2.46 -826.16 -2.03 -26.11 16 12 C 0.26 13.93 5.20 85.63 0.45 14.37 16 13 C -0.53 -30.10 9.03 25.60 0.23 -29.86 16 14 H 0.06 3.12 6.66 -2.91 -0.02 3.11 16 15 C 0.01 0.38 5.46 84.66 0.46 0.84 16 16 N -0.93 -56.72 13.29 21.45 0.28 -56.44 16 17 Si 0.96 45.65 29.54 68.60 2.03 47.67 16 18 H -0.28 -13.68 7.11 99.48 0.71 -12.97 16 19 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 20 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 21 C 0.14 4.05 5.54 86.38 0.48 4.53 16 22 C -0.19 -5.40 5.95 -10.79 -0.06 -5.46 16 23 C -0.17 -3.24 9.18 30.60 0.28 -2.96 16 24 C -0.16 -3.36 10.25 30.60 0.31 -3.05 16 25 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 26 H 0.06 1.87 8.14 -2.38 -0.02 1.85 16 27 H 0.05 1.79 7.89 -2.39 -0.02 1.77 16 28 H 0.25 3.24 8.06 -2.91 -0.02 3.22 16 29 H 0.13 2.98 6.73 -2.39 -0.02 2.96 16 30 H 0.13 2.30 7.40 -2.38 -0.02 2.28 16 31 H -0.01 -0.33 7.42 -2.39 -0.02 -0.35 16 32 H 0.02 1.22 7.89 -2.39 -0.02 1.20 16 33 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 34 H 0.11 2.07 6.18 -2.39 -0.01 2.05 16 35 H 0.08 2.21 7.89 -2.39 -0.02 2.20 16 36 H 0.08 2.91 6.58 -2.39 -0.02 2.90 16 37 H 0.12 1.63 7.87 -2.39 -0.02 1.61 16 38 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 39 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 40 H 0.11 1.82 8.14 -2.39 -0.02 1.81 16 Total: -1.00 -82.95 336.81 3.74 -79.21 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: 0.22 Total: 16.59 kcal Atomic # 6 Polarization: -3.24 SS G_CDS: 6.55 Total: 3.30 kcal Atomic # 7 Polarization: -111.08 SS G_CDS: -5.01 Total: -116.09 kcal Atomic # 8 Polarization: -30.64 SS G_CDS: -0.05 Total: -30.69 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.67 kcal Total: -82.95 3.74 -79.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346306666.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.568 kcal (2) G-P(sol) polarization free energy of solvation -82.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.214 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds