Wall clock time and date at job start Mon Mar 30 2020 02:31:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.34123 * 125.98883 * 2 1 4 4 C 1.30498 * 109.25720 * 179.97438 * 3 2 1 5 5 N 1.35044 * 108.69938 * 359.77149 * 4 3 2 6 6 H 0.96998 * 126.40445 * 180.27045 * 5 4 3 7 7 C 1.34674 * 125.98764 * 179.97438 * 2 1 3 8 8 C 1.50700 * 126.59393 * 359.97063 * 7 2 1 9 9 C 1.50704 * 109.47321 * 84.99626 * 8 7 2 10 10 O 1.21291 * 119.99900 * 359.97438 * 9 8 7 11 11 N 1.34778 * 119.99864 * 180.02562 * 9 8 7 12 12 C 1.37098 * 119.99660 * 179.97438 * 11 9 8 13 13 H 1.08001 * 119.99560 * 137.64543 * 12 11 9 14 14 C 1.38948 * 120.00179 * 317.64740 * 12 11 9 15 15 N 1.31408 * 120.00009 * 340.27525 * 14 12 11 16 16 Si 1.86797 * 119.99898 * 160.27687 * 14 12 11 17 17 H 1.48500 * 109.47011 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47338 * 120.00150 * 16 14 12 19 19 H 1.48502 * 109.47066 * 239.99969 * 16 14 12 20 20 C 1.46502 * 120.00026 * 359.97438 * 11 9 8 21 21 C 1.54961 * 110.92039 * 131.63071 * 20 11 9 22 22 C 1.54265 * 104.15655 * 156.29771 * 21 20 11 23 23 C 1.53877 * 106.64221 * 336.44269 * 22 21 20 24 24 C 1.54269 * 106.59600 * 359.97438 * 23 22 21 25 25 H 1.08995 * 109.47155 * 269.99413 * 1 2 3 26 26 H 1.09000 * 109.46933 * 30.00266 * 1 2 3 27 27 H 1.09002 * 109.46820 * 149.99668 * 1 2 3 28 28 H 1.07998 * 125.65487 * 180.02562 * 4 3 2 29 29 H 1.09001 * 109.46668 * 324.99341 * 8 7 2 30 30 H 1.08994 * 109.46809 * 204.99610 * 8 7 2 31 31 H 0.96997 * 119.99923 * 180.02562 * 15 14 12 32 32 H 1.09001 * 110.67079 * 8.32445 * 20 11 9 33 33 H 1.08994 * 110.47927 * 37.63921 * 21 20 11 34 34 H 1.09001 * 110.52860 * 274.97467 * 21 20 11 35 35 H 1.09008 * 110.02987 * 217.13330 * 22 21 20 36 36 H 1.09002 * 110.03666 * 95.75377 * 22 21 20 37 37 H 1.08999 * 110.03160 * 119.26379 * 23 22 21 38 38 H 1.09003 * 110.03038 * 240.64285 * 23 22 21 39 39 H 1.08991 * 110.48557 * 142.29062 * 24 23 22 40 40 H 1.09004 * 110.48229 * 264.80202 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2952 1.0852 0.0000 4 6 3.5449 0.7095 0.0006 5 7 3.5913 -0.6401 0.0060 6 1 4.3913 -1.1886 0.0113 7 6 2.2984 -1.0897 0.0005 8 6 1.8473 -2.5276 0.0018 9 6 1.5781 -2.9709 -1.4132 10 8 1.7365 -2.1954 -2.3322 11 7 1.1603 -4.2289 -1.6573 12 6 0.9149 -4.6319 -2.9445 13 1 1.2412 -5.6065 -3.2766 14 6 0.2465 -3.7868 -3.8218 15 7 -0.4813 -2.7973 -3.3547 16 14 0.3825 -4.0570 -5.6651 17 1 1.2555 -5.2286 -5.9305 18 1 -0.9680 -4.3074 -6.2297 19 1 0.9685 -2.8495 -6.3005 20 6 0.9685 -5.1654 -0.5472 21 6 -0.4036 -5.8775 -0.6549 22 6 -0.2133 -7.1854 0.1407 23 6 1.2970 -7.4798 0.1500 24 6 1.9728 -6.3408 -0.6410 25 1 -0.3633 -0.0001 1.0276 26 1 -0.3633 0.8900 -0.5139 27 1 -0.3633 -0.8900 -0.5139 28 1 4.4004 1.3687 0.0011 29 1 0.9356 -2.6218 0.5918 30 1 2.6274 -3.1527 0.4361 31 1 -0.9482 -2.2076 -3.9671 32 1 1.0627 -4.6522 0.4098 33 1 -0.6395 -6.0954 -1.6964 34 1 -1.1871 -5.2677 -0.2048 35 1 -0.7496 -8.0000 -0.3462 36 1 -0.5752 -7.0579 1.1610 37 1 1.6682 -7.4943 1.1747 38 1 1.4936 -8.4377 -0.3316 39 1 2.9227 -6.0685 -0.1812 40 1 2.1232 -6.6349 -1.6798 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346420595.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:48 Heat of formation + Delta-G solvation = -1.435737 kcal Electronic energy + Delta-G solvation = -22505.477996 eV Core-core repulsion = 19320.090148 eV Total energy + Delta-G solvation = -3185.387849 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.93078 -40.41389 -38.27149 -35.24642 -33.96225 -33.83366 -32.97509 -29.86215 -29.38826 -28.29021 -27.27947 -25.83187 -22.63131 -21.72907 -21.32461 -20.90525 -20.30268 -18.56299 -18.16460 -17.69361 -16.72352 -16.28165 -16.00989 -15.81162 -15.70339 -14.99050 -14.76126 -14.29407 -14.04796 -13.77483 -13.66382 -13.60323 -13.36808 -13.20175 -13.01816 -12.94482 -12.61094 -12.41329 -12.18275 -11.97670 -11.93390 -11.80237 -11.32472 -11.09533 -10.88246 -10.75751 -10.67019 -9.94463 -9.08143 -8.92422 -8.13379 -5.86536 1.16620 1.35464 1.42505 1.48933 2.21064 2.31231 2.39062 2.53497 3.25922 3.31276 3.76193 3.95692 3.98730 4.00624 4.14096 4.23947 4.44809 4.48744 4.51762 4.55869 4.68944 4.75452 4.83131 4.84334 4.88814 4.99684 5.08827 5.13448 5.15989 5.24475 5.33191 5.36849 5.49264 5.60106 5.63364 5.70022 5.89015 6.27917 6.68677 7.12798 7.21230 7.32382 7.81276 8.47296 8.94045 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013726 B = 0.007569 C = 0.005658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2039.485068 B = 3698.537890 C = 4947.457913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C -0.019 4.019 3 N -0.536 5.536 4 C 0.187 3.813 5 N -0.556 5.556 6 H 0.431 0.569 7 C 0.004 3.996 8 C -0.050 4.050 9 C 0.465 3.535 10 O -0.578 6.578 11 N -0.458 5.458 12 C -0.342 4.342 13 H 0.076 0.924 14 C 0.025 3.975 15 N -0.858 5.858 16 Si 0.952 3.048 17 H -0.259 1.259 18 H -0.278 1.278 19 H -0.302 1.302 20 C 0.118 3.882 21 C -0.122 4.122 22 C -0.115 4.115 23 C -0.111 4.111 24 C -0.128 4.128 25 H 0.083 0.917 26 H 0.054 0.946 27 H 0.049 0.951 28 H 0.250 0.750 29 H 0.107 0.893 30 H 0.113 0.887 31 H 0.253 0.747 32 H 0.095 0.905 33 H 0.050 0.950 34 H 0.048 0.952 35 H 0.063 0.937 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.067 0.933 39 H 0.071 0.929 40 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.209 -5.223 11.992 14.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.146 4.146 3 N -0.257 5.257 4 C -0.096 4.096 5 N -0.160 5.160 6 H 0.271 0.729 7 C -0.113 4.113 8 C -0.091 4.091 9 C 0.253 3.747 10 O -0.459 6.459 11 N -0.180 5.180 12 C -0.469 4.469 13 H 0.093 0.907 14 C -0.181 4.181 15 N -0.493 5.493 16 Si 0.779 3.221 17 H -0.182 1.182 18 H -0.204 1.204 19 H -0.230 1.230 20 C 0.014 3.986 21 C -0.160 4.160 22 C -0.153 4.153 23 C -0.149 4.149 24 C -0.167 4.167 25 H 0.101 0.899 26 H 0.073 0.927 27 H 0.068 0.932 28 H 0.266 0.734 29 H 0.125 0.875 30 H 0.131 0.869 31 H 0.062 0.938 32 H 0.113 0.887 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.082 0.918 36 H 0.097 0.903 37 H 0.102 0.898 38 H 0.085 0.915 39 H 0.089 0.911 40 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 5.846 -3.880 11.478 13.453 hybrid contribution 0.360 -0.704 -1.542 1.733 sum 6.206 -4.584 9.936 12.580 Atomic orbital electron populations 1.19885 0.88197 1.01486 1.01880 1.20602 0.96854 0.88754 1.08418 1.70045 1.02195 1.31492 1.21979 1.25610 0.97451 0.82485 1.04102 1.43035 1.07714 1.08774 1.56486 0.72853 1.20448 0.84687 0.95995 1.10133 1.20017 1.03388 0.89870 0.95861 1.20531 0.80567 0.83352 0.90224 1.90527 1.54456 1.53199 1.47716 1.43472 1.58976 1.10078 1.05435 1.18955 1.36992 1.03324 0.87677 0.90679 1.25818 0.93640 0.96208 1.02459 1.69965 1.26472 1.17203 1.35690 0.85527 0.77816 0.77477 0.81284 1.18235 1.20414 1.22958 1.22380 0.95406 0.90717 0.90067 1.22479 0.96609 0.96646 1.00314 1.22063 0.96811 0.96090 1.00287 1.22035 0.94612 0.97599 1.00690 1.22617 0.98321 0.95587 1.00181 0.89855 0.92712 0.93230 0.73444 0.87527 0.86876 0.93800 0.88727 0.93155 0.93308 0.91810 0.90310 0.89789 0.91450 0.91073 0.93406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.22 10.13 71.24 0.72 -1.50 16 2 C -0.02 -0.77 7.09 41.39 0.29 -0.47 16 3 N -0.54 -20.73 11.25 -188.31 -2.12 -22.84 16 4 C 0.19 5.49 13.04 180.26 2.35 7.84 16 5 N -0.56 -16.27 6.15 -186.49 -1.15 -17.42 16 6 H 0.43 9.24 8.96 -92.71 -0.83 8.41 16 7 C 0.00 0.14 5.73 40.95 0.23 0.37 16 8 C -0.05 -1.79 4.15 29.10 0.12 -1.66 16 9 C 0.47 22.53 6.97 87.66 0.61 23.14 16 10 O -0.58 -34.25 13.66 -3.06 -0.04 -34.29 16 11 N -0.46 -21.52 2.57 -606.32 -1.56 -23.08 16 12 C -0.34 -18.23 7.42 84.04 0.62 -17.61 16 13 H 0.08 3.93 7.02 -2.91 -0.02 3.91 16 14 C 0.03 1.44 4.33 84.93 0.37 1.81 16 15 N -0.86 -51.81 11.67 21.66 0.25 -51.56 16 16 Si 0.95 46.23 29.60 68.60 2.03 48.26 16 17 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 18 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 19 H -0.30 -15.53 7.11 99.48 0.71 -14.83 16 20 C 0.12 4.18 3.16 46.31 0.15 4.33 16 21 C -0.12 -4.24 6.31 31.69 0.20 -4.04 16 22 C -0.11 -2.83 6.80 31.32 0.21 -2.62 16 23 C -0.11 -2.52 6.80 31.32 0.21 -2.31 16 24 C -0.13 -3.82 6.42 31.67 0.20 -3.61 16 25 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 26 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 27 H 0.05 2.21 7.89 -2.39 -0.02 2.19 16 28 H 0.25 4.40 8.06 -2.91 -0.02 4.37 16 29 H 0.11 3.56 7.54 -2.39 -0.02 3.54 16 30 H 0.11 3.14 7.95 -2.39 -0.02 3.12 16 31 H 0.25 15.09 8.31 -92.71 -0.77 14.32 16 32 H 0.09 2.85 5.96 -2.39 -0.01 2.84 16 33 H 0.05 2.11 6.96 -2.39 -0.02 2.09 16 34 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.06 1.50 8.14 -2.38 -0.02 1.49 16 36 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 40 H 0.05 1.68 6.92 -2.38 -0.02 1.66 16 Total: -1.00 -78.58 325.29 3.93 -74.64 By element: Atomic # 1 Polarization: 22.40 SS G_CDS: 0.22 Total: 22.62 kcal Atomic # 6 Polarization: -2.63 SS G_CDS: 6.30 Total: 3.67 kcal Atomic # 7 Polarization: -110.33 SS G_CDS: -4.57 Total: -114.91 kcal Atomic # 8 Polarization: -34.25 SS G_CDS: -0.04 Total: -34.29 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 2.03 Total: 48.26 kcal Total: -78.58 3.93 -74.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346420595.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.209 kcal (2) G-P(sol) polarization free energy of solvation -78.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds