Wall clock time and date at job start Mon Mar 30 2020 01:57:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35117 * 125.55572 * 2 1 4 4 C 1.40974 * 108.24375 * 179.73252 * 3 2 1 5 5 N 1.33316 * 126.35793 * 180.02562 * 4 3 2 6 6 C 1.32909 * 119.99784 * 359.97438 * 5 4 3 7 7 O 1.21593 * 119.99847 * 359.97438 * 6 5 4 8 8 C 1.50693 * 119.99682 * 179.97438 * 6 5 4 9 9 C 1.53000 * 109.47054 * 185.54073 * 8 6 5 10 10 C 1.53007 * 115.54800 * 279.64551 * 9 8 6 11 11 C 1.52995 * 117.50139 * 133.94076 * 9 8 6 12 12 C 1.52993 * 59.99991 * 252.50585 * 11 9 8 13 13 N 1.37280 * 107.28616 * 359.97438 * 4 3 2 14 14 H 0.97003 * 126.35004 * 180.02562 * 13 4 3 15 15 N 1.36340 * 125.54969 * 179.68544 * 2 1 3 16 16 C 1.46501 * 125.85942 * 0.28949 * 15 2 1 17 17 C 1.50706 * 109.47067 * 84.99905 * 16 15 2 18 18 H 1.08000 * 119.99965 * 359.97438 * 17 16 15 19 19 C 1.37879 * 119.99646 * 179.97438 * 17 16 15 20 20 N 1.31514 * 120.00501 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 119.99496 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46894 * 60.00379 * 21 19 17 23 23 H 1.48507 * 109.46980 * 179.97438 * 21 19 17 24 24 H 1.48488 * 109.47317 * 299.99953 * 21 19 17 25 25 H 1.09001 * 109.47187 * 90.02624 * 1 2 3 26 26 H 1.08996 * 109.47593 * 210.02416 * 1 2 3 27 27 H 1.09007 * 109.47155 * 330.03156 * 1 2 3 28 28 H 1.08007 * 125.87797 * 359.76365 * 3 2 1 29 29 H 1.08999 * 109.47188 * 305.53834 * 8 6 5 30 30 H 1.08999 * 109.47483 * 65.53987 * 8 6 5 31 31 H 1.09001 * 109.46741 * 64.99647 * 10 9 8 32 32 H 1.08998 * 109.46883 * 184.99444 * 10 9 8 33 33 H 1.08995 * 109.47003 * 304.99819 * 10 9 8 34 34 H 1.08997 * 117.50083 * 359.97438 * 11 9 8 35 35 H 1.09001 * 117.50360 * 145.02265 * 11 9 8 36 36 H 1.09001 * 117.50443 * 252.50894 * 12 11 9 37 37 H 1.09005 * 117.49979 * 107.48625 * 12 11 9 38 38 H 1.09006 * 109.47204 * 204.99556 * 16 15 2 39 39 H 1.08994 * 109.47410 * 324.99976 * 16 15 2 40 40 H 0.96998 * 119.99863 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2927 1.0992 0.0000 4 6 3.6386 0.6798 0.0063 5 7 4.7126 1.4696 0.0087 6 6 4.5660 2.7905 0.0046 7 8 3.4523 3.2786 -0.0019 8 6 5.7800 3.6833 0.0079 9 6 5.3396 5.1425 0.1413 10 6 4.8570 5.8068 -1.1498 11 6 6.0882 6.0170 1.1491 12 6 4.6592 5.5585 1.4469 13 7 3.6379 -0.6930 0.0106 14 1 4.4189 -1.2683 0.0156 15 7 2.2997 -1.1093 0.0061 16 6 1.8326 -2.4978 0.0077 17 6 1.5609 -2.9381 -1.4078 18 1 1.7198 -2.2520 -2.2266 19 6 1.1095 -4.2168 -1.6573 20 7 0.9165 -5.0524 -0.6603 21 14 0.7720 -4.7622 -3.4118 22 1 2.0197 -4.6599 -4.2106 23 1 0.2998 -6.1702 -3.4103 24 1 -0.2711 -3.8905 -4.0092 25 1 -0.3633 -0.0005 -1.0277 26 1 -0.3634 -0.8897 0.5142 27 1 -0.3634 0.8903 0.5134 28 1 1.9488 2.1231 -0.0036 29 1 6.4227 3.4195 0.8478 30 1 6.3292 3.5534 -0.9247 31 1 3.9456 5.3164 -1.4919 32 1 4.6537 6.8610 -0.9618 33 1 5.6277 5.7161 -1.9151 34 1 6.8941 5.5527 1.7175 35 1 6.2370 7.0658 0.8926 36 1 3.8679 6.3057 1.3862 37 1 4.5252 4.7927 2.2109 38 1 2.5978 -3.1381 0.4468 39 1 0.9165 -2.5724 0.5935 40 1 0.5985 -5.9518 -0.8359 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346468183.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:13 Heat of formation + Delta-G solvation = 75.271769 kcal Electronic energy + Delta-G solvation = -21086.036736 eV Core-core repulsion = 17903.975174 eV Total energy + Delta-G solvation = -3182.061562 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.93024 -39.01704 -37.10193 -34.29549 -33.11813 -32.21306 -30.81745 -29.34993 -27.96270 -27.52466 -26.53242 -23.28588 -22.25310 -21.79651 -19.77625 -19.44325 -18.26355 -17.11671 -16.74435 -15.72356 -15.40053 -15.09548 -14.85051 -14.55993 -14.09941 -13.98321 -13.59374 -12.95940 -12.83143 -12.68291 -12.59256 -12.55112 -12.12397 -12.01414 -11.81795 -11.58445 -11.35627 -11.30049 -11.05365 -10.88734 -10.54052 -10.35498 -10.02201 -9.61961 -9.44514 -9.10045 -8.93420 -8.85070 -8.23052 -6.94755 -6.51197 -4.67483 1.66760 2.05406 2.99488 3.05831 3.11601 3.14960 3.89932 4.04189 4.28958 4.41160 4.79055 4.83706 4.96778 5.01748 5.05379 5.27682 5.35710 5.53013 5.74648 5.80460 5.80872 5.84039 5.95721 6.04545 6.09344 6.10757 6.16946 6.21468 6.26359 6.32506 6.49465 6.52140 6.57470 6.64086 6.78043 7.36167 7.48453 7.52019 7.67280 7.99803 8.38516 8.44043 9.03034 9.47064 10.50898 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.035212 B = 0.003397 C = 0.003361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.999323 B = 8241.454889 C = 8328.920191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.188 3.812 3 C -0.333 4.333 4 C 0.471 3.529 5 N -0.708 5.708 6 C 0.493 3.507 7 O -0.578 6.578 8 C -0.078 4.078 9 C -0.105 4.105 10 C -0.110 4.110 11 C -0.186 4.186 12 C -0.155 4.155 13 N -0.468 5.468 14 H 0.445 0.555 15 N -0.339 5.339 16 C 0.254 3.746 17 C -0.557 4.557 18 H 0.068 0.932 19 C 0.071 3.929 20 N -0.887 5.887 21 Si 0.909 3.091 22 H -0.273 1.273 23 H -0.282 1.282 24 H -0.271 1.271 25 H 0.090 0.910 26 H 0.080 0.920 27 H 0.086 0.914 28 H 0.184 0.816 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.068 0.932 32 H 0.049 0.951 33 H 0.052 0.948 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.051 0.949 39 H 0.068 0.932 40 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.432 11.586 2.448 12.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.061 3.939 3 C -0.365 4.365 4 C 0.222 3.778 5 N -0.472 5.472 6 C 0.279 3.721 7 O -0.460 6.460 8 C -0.118 4.118 9 C -0.105 4.105 10 C -0.167 4.167 11 C -0.223 4.223 12 C -0.193 4.193 13 N -0.190 5.190 14 H 0.292 0.708 15 N -0.126 5.126 16 C 0.138 3.862 17 C -0.595 4.595 18 H 0.087 0.913 19 C -0.134 4.134 20 N -0.523 5.523 21 Si 0.736 3.264 22 H -0.198 1.198 23 H -0.208 1.208 24 H -0.196 1.196 25 H 0.108 0.892 26 H 0.099 0.901 27 H 0.105 0.895 28 H 0.201 0.799 29 H 0.100 0.900 30 H 0.105 0.895 31 H 0.087 0.913 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.107 0.893 37 H 0.107 0.893 38 H 0.069 0.931 39 H 0.085 0.915 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.611 10.990 2.511 11.838 hybrid contribution -0.196 -0.642 -0.915 1.134 sum 3.416 10.349 1.597 11.014 Atomic orbital electron populations 1.20594 0.86370 1.03860 1.04286 1.21369 0.94498 0.85660 0.92342 1.22262 0.91192 1.00252 1.22818 1.19231 0.91792 0.82057 0.84701 1.68760 1.28130 1.05750 1.44581 1.20657 0.89303 0.86202 0.75927 1.90509 1.27219 1.79200 1.49091 1.20765 0.96865 0.90707 1.03429 1.21120 1.03436 0.94076 0.91916 1.21271 1.01432 0.98984 0.95016 1.23156 0.95823 0.99541 1.03781 1.22792 0.94456 1.02848 0.99157 1.44532 0.98838 1.05310 1.70284 0.70827 1.47906 0.92812 1.08213 1.63636 1.20034 0.96483 0.70179 0.99537 1.21336 1.47862 0.98723 0.91564 0.91334 1.24943 0.94219 0.95775 0.98466 1.69886 1.43928 1.07028 1.31485 0.86354 0.79153 0.77844 0.83094 1.19844 1.20775 1.19637 0.89154 0.90111 0.89550 0.79950 0.89969 0.89545 0.91296 0.93174 0.92873 0.89191 0.89246 0.89261 0.89315 0.93112 0.91469 0.91764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.31 10.09 36.00 0.36 -0.95 16 2 C 0.19 3.37 6.93 -81.70 -0.57 2.81 16 3 C -0.33 -6.44 9.40 -39.66 -0.37 -6.81 16 4 C 0.47 9.41 8.07 -155.18 -1.25 8.16 16 5 N -0.71 -14.26 10.51 -11.59 -0.12 -14.38 16 6 C 0.49 9.52 7.56 -11.82 -0.09 9.43 16 7 O -0.58 -12.02 11.86 5.28 0.06 -11.96 16 8 C -0.08 -1.19 5.71 -27.89 -0.16 -1.35 16 9 C -0.10 -1.45 1.59 -154.51 -0.25 -1.70 16 10 C -0.11 -1.43 9.66 37.16 0.36 -1.07 16 11 C -0.19 -2.14 9.87 -26.74 -0.26 -2.40 16 12 C -0.16 -2.11 9.19 -26.74 -0.25 -2.35 16 13 N -0.47 -8.65 7.37 31.32 0.23 -8.42 16 14 H 0.44 7.23 8.96 -182.56 -1.64 5.60 16 15 N -0.34 -6.51 3.63 -58.03 -0.21 -6.72 16 16 C 0.25 5.35 5.93 -5.19 -0.03 5.32 16 17 C -0.56 -13.21 9.39 -34.44 -0.32 -13.53 16 18 H 0.07 1.68 7.81 -52.49 -0.41 1.27 16 19 C 0.07 1.72 5.46 -17.82 -0.10 1.63 16 20 N -0.89 -22.37 13.29 55.43 0.74 -21.64 16 21 Si 0.91 19.16 29.54 -169.99 -5.02 14.14 16 22 H -0.27 -5.82 7.11 56.52 0.40 -5.41 16 23 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 24 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 25 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 26 H 0.08 1.12 7.13 -51.93 -0.37 0.75 16 27 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.18 3.65 5.77 -52.48 -0.30 3.35 16 29 H 0.08 1.18 7.94 -51.93 -0.41 0.76 16 30 H 0.09 1.24 8.13 -51.93 -0.42 0.82 16 31 H 0.07 1.04 7.59 -51.93 -0.39 0.64 16 32 H 0.05 0.57 8.09 -51.93 -0.42 0.15 16 33 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.09 0.96 8.08 -51.93 -0.42 0.54 16 35 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.09 1.30 8.14 -51.93 -0.42 0.87 16 38 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 39 H 0.07 1.42 7.17 -51.93 -0.37 1.05 16 40 H 0.27 6.57 8.31 -40.82 -0.34 6.23 16 LS Contribution 338.36 15.07 5.10 5.10 Total: -1.00 -27.98 338.36 -9.40 -37.38 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: -7.26 Total: 9.33 kcal Atomic # 6 Polarization: 0.10 SS G_CDS: -2.92 Total: -2.82 kcal Atomic # 7 Polarization: -51.80 SS G_CDS: 0.63 Total: -51.17 kcal Atomic # 8 Polarization: -12.02 SS G_CDS: 0.06 Total: -11.96 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -5.02 Total: 14.14 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -27.98 -9.40 -37.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346468183.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.651 kcal (2) G-P(sol) polarization free energy of solvation -27.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.379 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds