Wall clock time and date at job start Mon Mar 30 2020 01:57:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35117 * 125.55572 * 2 1 4 4 C 1.40974 * 108.24375 * 179.73252 * 3 2 1 5 5 N 1.33316 * 126.35793 * 180.02562 * 4 3 2 6 6 C 1.32909 * 119.99784 * 359.97438 * 5 4 3 7 7 O 1.21593 * 119.99847 * 359.97438 * 6 5 4 8 8 C 1.50693 * 119.99682 * 179.97438 * 6 5 4 9 9 C 1.53000 * 109.47054 * 185.54073 * 8 6 5 10 10 C 1.53007 * 115.54800 * 279.64551 * 9 8 6 11 11 C 1.52995 * 117.50139 * 133.94076 * 9 8 6 12 12 C 1.52993 * 59.99991 * 252.50585 * 11 9 8 13 13 N 1.37280 * 107.28616 * 359.97438 * 4 3 2 14 14 H 0.97003 * 126.35004 * 180.02562 * 13 4 3 15 15 N 1.36340 * 125.54969 * 179.68544 * 2 1 3 16 16 C 1.46501 * 125.85942 * 0.28949 * 15 2 1 17 17 C 1.50706 * 109.47067 * 84.99905 * 16 15 2 18 18 H 1.08000 * 119.99965 * 359.97438 * 17 16 15 19 19 C 1.37879 * 119.99646 * 179.97438 * 17 16 15 20 20 N 1.31514 * 120.00501 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 119.99496 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46894 * 60.00379 * 21 19 17 23 23 H 1.48507 * 109.46980 * 179.97438 * 21 19 17 24 24 H 1.48488 * 109.47317 * 299.99953 * 21 19 17 25 25 H 1.09001 * 109.47187 * 90.02624 * 1 2 3 26 26 H 1.08996 * 109.47593 * 210.02416 * 1 2 3 27 27 H 1.09007 * 109.47155 * 330.03156 * 1 2 3 28 28 H 1.08007 * 125.87797 * 359.76365 * 3 2 1 29 29 H 1.08999 * 109.47188 * 305.53834 * 8 6 5 30 30 H 1.08999 * 109.47483 * 65.53987 * 8 6 5 31 31 H 1.09001 * 109.46741 * 64.99647 * 10 9 8 32 32 H 1.08998 * 109.46883 * 184.99444 * 10 9 8 33 33 H 1.08995 * 109.47003 * 304.99819 * 10 9 8 34 34 H 1.08997 * 117.50083 * 359.97438 * 11 9 8 35 35 H 1.09001 * 117.50360 * 145.02265 * 11 9 8 36 36 H 1.09001 * 117.50443 * 252.50894 * 12 11 9 37 37 H 1.09005 * 117.49979 * 107.48625 * 12 11 9 38 38 H 1.09006 * 109.47204 * 204.99556 * 16 15 2 39 39 H 1.08994 * 109.47410 * 324.99976 * 16 15 2 40 40 H 0.96998 * 119.99863 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2927 1.0992 0.0000 4 6 3.6386 0.6798 0.0063 5 7 4.7126 1.4696 0.0087 6 6 4.5660 2.7905 0.0046 7 8 3.4523 3.2786 -0.0019 8 6 5.7800 3.6833 0.0079 9 6 5.3396 5.1425 0.1413 10 6 4.8570 5.8068 -1.1498 11 6 6.0882 6.0170 1.1491 12 6 4.6592 5.5585 1.4469 13 7 3.6379 -0.6930 0.0106 14 1 4.4189 -1.2683 0.0156 15 7 2.2997 -1.1093 0.0061 16 6 1.8326 -2.4978 0.0077 17 6 1.5609 -2.9381 -1.4078 18 1 1.7198 -2.2520 -2.2266 19 6 1.1095 -4.2168 -1.6573 20 7 0.9165 -5.0524 -0.6603 21 14 0.7720 -4.7622 -3.4118 22 1 2.0197 -4.6599 -4.2106 23 1 0.2998 -6.1702 -3.4103 24 1 -0.2711 -3.8905 -4.0092 25 1 -0.3633 -0.0005 -1.0277 26 1 -0.3634 -0.8897 0.5142 27 1 -0.3634 0.8903 0.5134 28 1 1.9488 2.1231 -0.0036 29 1 6.4227 3.4195 0.8478 30 1 6.3292 3.5534 -0.9247 31 1 3.9456 5.3164 -1.4919 32 1 4.6537 6.8610 -0.9618 33 1 5.6277 5.7161 -1.9151 34 1 6.8941 5.5527 1.7175 35 1 6.2370 7.0658 0.8926 36 1 3.8679 6.3057 1.3862 37 1 4.5252 4.7927 2.2109 38 1 2.5978 -3.1381 0.4468 39 1 0.9165 -2.5724 0.5935 40 1 0.5985 -5.9518 -0.8359 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346468183.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:12 Heat of formation + Delta-G solvation = 59.896720 kcal Electronic energy + Delta-G solvation = -21086.703448 eV Core-core repulsion = 17903.975174 eV Total energy + Delta-G solvation = -3182.728274 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.43795 -40.34950 -38.31759 -35.96921 -34.75304 -33.67851 -32.43244 -30.58654 -29.11585 -28.83794 -28.15030 -24.99017 -23.36113 -23.15891 -21.20945 -20.81569 -19.48975 -18.90429 -18.33948 -17.18561 -16.79915 -16.63120 -16.20377 -16.03434 -15.45596 -15.36347 -14.83597 -14.41509 -14.29169 -14.22604 -13.82287 -13.70543 -13.64649 -13.25246 -13.13924 -12.96557 -12.73139 -12.72170 -12.31709 -12.27170 -12.06658 -11.96285 -11.09071 -11.08560 -10.81678 -10.77508 -10.39543 -10.32287 -9.76327 -8.60081 -8.27665 -6.57494 0.16685 0.54901 1.38914 1.41426 1.47954 1.51253 2.29546 2.68890 2.91517 2.92947 2.97507 3.63851 3.72248 3.88118 3.97555 4.19128 4.23008 4.25345 4.29740 4.65482 4.74839 4.79372 4.83089 4.84087 4.86527 4.91302 4.95771 5.04595 5.08265 5.11840 5.13242 5.27479 5.33284 5.33679 5.47707 5.49645 5.68377 5.99688 6.14052 6.42503 6.62269 6.92408 7.16190 7.95561 8.65324 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.035212 B = 0.003397 C = 0.003361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.999323 B = 8241.454889 C = 8328.920191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.196 3.804 3 C -0.346 4.346 4 C 0.456 3.544 5 N -0.720 5.720 6 C 0.480 3.520 7 O -0.598 6.598 8 C -0.073 4.073 9 C -0.124 4.124 10 C -0.106 4.106 11 C -0.155 4.155 12 C -0.171 4.171 13 N -0.465 5.465 14 H 0.452 0.548 15 N -0.346 5.346 16 C 0.267 3.733 17 C -0.564 4.564 18 H 0.057 0.943 19 C 0.033 3.967 20 N -0.912 5.912 21 Si 0.962 3.038 22 H -0.277 1.277 23 H -0.279 1.279 24 H -0.266 1.266 25 H 0.098 0.902 26 H 0.084 0.916 27 H 0.114 0.886 28 H 0.176 0.824 29 H 0.091 0.909 30 H 0.096 0.904 31 H 0.040 0.960 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.101 0.899 35 H 0.111 0.889 36 H 0.092 0.908 37 H 0.071 0.929 38 H 0.042 0.958 39 H 0.070 0.930 40 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.669 12.517 2.116 13.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.069 3.931 3 C -0.378 4.378 4 C 0.207 3.793 5 N -0.485 5.485 6 C 0.267 3.733 7 O -0.482 6.482 8 C -0.113 4.113 9 C -0.124 4.124 10 C -0.163 4.163 11 C -0.192 4.192 12 C -0.208 4.208 13 N -0.188 5.188 14 H 0.300 0.700 15 N -0.132 5.132 16 C 0.150 3.850 17 C -0.602 4.602 18 H 0.076 0.924 19 C -0.170 4.170 20 N -0.550 5.550 21 Si 0.787 3.213 22 H -0.202 1.202 23 H -0.204 1.204 24 H -0.191 1.191 25 H 0.116 0.884 26 H 0.103 0.897 27 H 0.132 0.868 28 H 0.193 0.807 29 H 0.110 0.890 30 H 0.114 0.886 31 H 0.059 0.941 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.119 0.881 35 H 0.129 0.871 36 H 0.110 0.890 37 H 0.089 0.911 38 H 0.060 0.940 39 H 0.088 0.912 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.861 11.929 2.184 12.727 hybrid contribution -0.265 -0.909 -0.787 1.231 sum 3.596 11.020 1.397 11.676 Atomic orbital electron populations 1.20779 0.83608 1.05419 1.05181 1.21926 0.96055 0.84620 0.90487 1.22196 0.91318 1.00311 1.23956 1.19480 0.92325 0.82518 0.84997 1.68862 1.28350 1.06321 1.44936 1.21412 0.90415 0.86296 0.75192 1.90488 1.28340 1.79423 1.49912 1.20782 0.95230 0.90990 1.04256 1.21190 1.05041 0.93686 0.92514 1.21230 1.00465 0.99597 0.95012 1.23230 0.94498 1.00223 1.01210 1.22776 0.96357 1.02934 0.98725 1.44526 0.98949 1.05069 1.70251 0.69963 1.47816 0.93286 1.08034 1.64072 1.19731 0.96243 0.70814 0.98219 1.21491 1.47618 0.98685 0.92412 0.92448 1.25575 0.94097 0.95876 1.01414 1.69951 1.44740 1.07339 1.32935 0.85526 0.78784 0.77608 0.79370 1.20211 1.20366 1.19109 0.88368 0.89733 0.86795 0.80670 0.89031 0.88607 0.94118 0.91423 0.91645 0.88053 0.87070 0.88986 0.91069 0.94006 0.91209 0.91621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.45 10.09 71.24 0.72 -1.73 16 2 C 0.20 6.90 6.93 41.14 0.29 7.18 16 3 C -0.35 -13.41 9.40 22.22 0.21 -13.20 16 4 C 0.46 18.35 8.07 133.82 1.08 19.43 16 5 N -0.72 -29.21 10.51 -309.88 -3.26 -32.46 16 6 C 0.48 18.62 7.56 87.94 0.67 19.28 16 7 O -0.60 -25.27 11.86 -4.01 -0.05 -25.31 16 8 C -0.07 -2.18 5.71 29.85 0.17 -2.01 16 9 C -0.12 -3.25 1.59 -52.18 -0.08 -3.34 16 10 C -0.11 -2.62 9.66 71.98 0.70 -1.92 16 11 C -0.15 -3.14 9.87 30.59 0.30 -2.83 16 12 C -0.17 -4.47 9.19 30.59 0.28 -4.19 16 13 N -0.47 -17.27 7.37 -54.81 -0.40 -17.67 16 14 H 0.45 14.81 8.96 -213.28 -1.91 12.90 16 15 N -0.35 -13.18 3.63 -337.49 -1.23 -14.40 16 16 C 0.27 11.17 5.93 85.63 0.51 11.67 16 17 C -0.56 -26.49 9.39 25.60 0.24 -26.25 16 18 H 0.06 2.79 7.81 -2.91 -0.02 2.77 16 19 C 0.03 1.57 5.46 84.66 0.46 2.04 16 20 N -0.91 -45.55 13.29 21.45 0.28 -45.27 16 21 Si 0.96 38.58 29.54 68.60 2.03 40.61 16 22 H -0.28 -11.18 7.11 99.48 0.71 -10.47 16 23 H -0.28 -10.93 7.11 99.48 0.71 -10.22 16 24 H -0.27 -10.40 7.11 99.48 0.71 -9.69 16 25 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 26 H 0.08 2.21 7.13 -2.39 -0.02 2.19 16 27 H 0.11 2.39 8.14 -2.38 -0.02 2.38 16 28 H 0.18 7.10 5.77 -2.91 -0.02 7.09 16 29 H 0.09 2.52 7.94 -2.39 -0.02 2.50 16 30 H 0.10 2.64 8.13 -2.39 -0.02 2.63 16 31 H 0.04 1.22 7.59 -2.39 -0.02 1.20 16 32 H 0.07 1.40 8.09 -2.39 -0.02 1.38 16 33 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.10 1.84 8.08 -2.39 -0.02 1.82 16 35 H 0.11 1.80 8.14 -2.39 -0.02 1.79 16 36 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 37 H 0.07 2.09 8.14 -2.38 -0.02 2.07 16 38 H 0.04 1.83 8.14 -2.38 -0.02 1.81 16 39 H 0.07 2.91 7.17 -2.39 -0.02 2.89 16 40 H 0.27 13.06 8.31 -92.71 -0.77 12.29 16 Total: -1.00 -58.93 338.36 2.04 -56.89 By element: Atomic # 1 Polarization: 34.35 SS G_CDS: -0.87 Total: 33.49 kcal Atomic # 6 Polarization: -1.40 SS G_CDS: 5.53 Total: 4.13 kcal Atomic # 7 Polarization: -105.20 SS G_CDS: -4.60 Total: -109.80 kcal Atomic # 8 Polarization: -25.27 SS G_CDS: -0.05 Total: -25.31 kcal Atomic # 14 Polarization: 38.58 SS G_CDS: 2.03 Total: 40.61 kcal Total: -58.93 2.04 -56.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346468183.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.785 kcal (2) G-P(sol) polarization free energy of solvation -58.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.889 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds