Wall clock time and date at job start Mon Mar 30 2020 02:09:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35309 * 126.13148 * 2 1 4 4 C 1.50701 * 126.03439 * 0.02562 * 3 2 1 5 5 C 1.50698 * 109.47364 * 85.00178 * 4 3 2 6 6 O 1.21277 * 120.00330 * 359.97438 * 5 4 3 7 7 N 1.34782 * 120.00135 * 180.02562 * 5 4 3 8 8 C 1.46495 * 120.00258 * 180.02562 * 7 5 4 9 9 C 1.52992 * 109.47269 * 184.79147 * 8 7 5 10 10 C 1.50694 * 115.55114 * 294.81128 * 9 8 7 11 11 H 1.08008 * 119.99906 * 95.20873 * 10 9 8 12 12 C 1.37875 * 120.00314 * 274.92789 * 10 9 8 13 13 N 1.31509 * 119.99913 * 355.42420 * 12 10 9 14 14 Si 1.86807 * 120.00040 * 175.41703 * 12 10 9 15 15 H 1.48494 * 109.47052 * 60.00642 * 14 12 10 16 16 H 1.48500 * 109.47055 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47106 * 300.00083 * 14 12 10 18 18 C 1.53003 * 117.49834 * 80.48431 * 9 8 7 19 19 C 1.53006 * 117.49908 * 149.14426 * 9 8 7 20 20 C 1.39861 * 107.92616 * 180.28152 * 3 2 1 21 21 N 1.30840 * 108.19782 * 359.55639 * 20 3 2 22 22 N 1.34950 * 126.12438 * 180.02562 * 2 1 3 23 23 C 1.46503 * 126.03945 * 359.96472 * 22 2 1 24 24 H 1.09000 * 109.46958 * 90.00155 * 1 2 3 25 25 H 1.09004 * 109.47439 * 210.00287 * 1 2 3 26 26 H 1.09002 * 109.47267 * 329.99784 * 1 2 3 27 27 H 1.09005 * 109.47271 * 324.99400 * 4 3 2 28 28 H 1.09009 * 109.47018 * 205.00151 * 4 3 2 29 29 H 0.96999 * 119.99637 * 359.97438 * 7 5 4 30 30 H 1.09001 * 109.47395 * 64.78624 * 8 7 5 31 31 H 1.09007 * 109.47080 * 304.78945 * 8 7 5 32 32 H 0.97001 * 119.99960 * 184.99387 * 13 12 10 33 33 H 1.09003 * 117.50034 * 214.99852 * 18 9 8 34 34 H 1.09002 * 117.49971 * 0.02686 * 18 9 8 35 35 H 1.08996 * 117.49810 * 359.97342 * 19 9 8 36 36 H 1.08995 * 117.50078 * 144.97442 * 19 9 8 37 37 H 1.07997 * 125.90527 * 179.73443 * 20 3 2 38 38 H 1.08990 * 109.47349 * 89.99530 * 23 22 2 39 39 H 1.09003 * 109.46847 * 209.99948 * 23 22 2 40 40 H 1.09004 * 109.46913 * 329.99493 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0928 0.0000 4 6 1.8433 2.5274 0.0005 5 6 1.5721 2.9674 1.4161 6 8 1.7369 2.1923 2.3342 7 7 1.1454 4.2221 1.6619 8 6 0.8823 4.6500 3.0380 9 6 0.3001 6.0647 3.0297 10 6 1.2238 7.1448 2.5286 11 1 1.1806 7.4557 1.4951 12 6 2.1201 7.7402 3.3906 13 7 2.1081 7.4305 4.6687 14 14 3.3517 8.9866 2.7431 15 1 2.6255 10.1301 2.1348 16 1 4.1965 9.4752 3.8624 17 1 4.2127 8.3448 1.7173 18 6 -1.1917 6.2130 2.7240 19 6 -0.6764 6.4334 4.1485 20 6 3.6334 0.6559 -0.0065 21 7 3.6333 -0.6525 -0.0007 22 7 2.3026 -1.0900 -0.0005 23 6 1.8539 -2.4847 -0.0004 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8900 0.5139 26 1 -0.3634 0.8900 0.5139 27 1 0.9305 2.6157 -0.5887 28 1 2.6186 3.1587 -0.4339 29 1 1.0133 4.8419 0.9276 30 1 1.8133 4.6435 3.6049 31 1 0.1703 3.9668 3.5011 32 1 2.6884 7.9012 5.2872 33 1 -1.5050 7.0917 2.1603 34 1 -1.7584 5.3025 2.5291 35 1 -0.9044 5.6678 4.8901 36 1 -0.6505 7.4570 4.5221 37 1 4.5083 1.2890 -0.0122 38 1 1.7420 -2.8304 -1.0279 39 1 2.5901 -3.1031 0.5130 40 1 0.8956 -2.5580 0.5140 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352648255.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:26 Heat of formation + Delta-G solvation = 55.541401 kcal Electronic energy + Delta-G solvation = -21240.090075 eV Core-core repulsion = 18057.172941 eV Total energy + Delta-G solvation = -3182.917135 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.25601 -38.82443 -36.63674 -33.62957 -33.17356 -32.77692 -31.94704 -29.67074 -26.75161 -26.58675 -25.52365 -24.47196 -21.18914 -20.87189 -19.95394 -19.45616 -18.89442 -16.69487 -16.43194 -16.03547 -15.45378 -14.96700 -14.78561 -14.58911 -14.21662 -13.86666 -13.49748 -13.24494 -13.09133 -12.84558 -12.57872 -12.40101 -12.36794 -12.14677 -11.85219 -11.59847 -11.32465 -10.96090 -10.93714 -10.54063 -10.46351 -10.22838 -9.57123 -9.24545 -9.15525 -9.02243 -8.47619 -8.28406 -8.11821 -8.02222 -6.06170 -4.16188 1.93422 2.55136 2.87200 3.27824 3.33009 3.34171 3.35124 4.10692 4.36482 4.49278 4.67561 4.96046 5.02042 5.13039 5.21436 5.23142 5.30978 5.33159 5.41159 5.44080 5.67587 5.76568 5.85722 6.00489 6.06456 6.27966 6.35644 6.49762 6.59210 6.71138 6.74980 6.92252 7.08505 7.13237 7.35370 7.42618 7.55141 7.79588 7.82045 8.35002 8.39882 8.84843 9.00153 9.51012 11.00979 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024974 B = 0.004008 C = 0.003673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.893427 B = 6983.530170 C = 7621.624705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.096 3.904 3 C -0.212 4.212 4 C -0.062 4.062 5 C 0.501 3.499 6 O -0.551 6.551 7 N -0.707 5.707 8 C 0.164 3.836 9 C 0.026 3.974 10 C -0.501 4.501 11 H 0.060 0.940 12 C 0.074 3.926 13 N -0.875 5.875 14 Si 0.891 3.109 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.275 1.275 18 C -0.211 4.211 19 C -0.144 4.144 20 C 0.064 3.936 21 N -0.304 5.304 22 N -0.378 5.378 23 C 0.104 3.896 24 H 0.078 0.922 25 H 0.068 0.932 26 H 0.086 0.914 27 H 0.092 0.908 28 H 0.098 0.902 29 H 0.400 0.600 30 H 0.065 0.935 31 H 0.037 0.963 32 H 0.262 0.738 33 H 0.077 0.923 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.086 0.914 37 H 0.181 0.819 38 H 0.071 0.929 39 H 0.086 0.914 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.740 -13.288 -11.022 17.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.031 4.031 3 C -0.223 4.223 4 C -0.103 4.103 5 C 0.287 3.713 6 O -0.429 6.429 7 N -0.357 5.357 8 C 0.041 3.959 9 C 0.025 3.975 10 C -0.538 4.538 11 H 0.078 0.922 12 C -0.131 4.131 13 N -0.511 5.511 14 Si 0.718 3.282 15 H -0.203 1.203 16 H -0.213 1.213 17 H -0.201 1.201 18 C -0.248 4.248 19 C -0.182 4.182 20 C -0.122 4.122 21 N -0.125 5.125 22 N -0.161 5.161 23 C -0.038 4.038 24 H 0.096 0.904 25 H 0.087 0.913 26 H 0.105 0.895 27 H 0.110 0.890 28 H 0.116 0.884 29 H 0.234 0.766 30 H 0.083 0.917 31 H 0.056 0.944 32 H 0.072 0.928 33 H 0.096 0.904 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.104 0.896 37 H 0.198 0.802 38 H 0.089 0.911 39 H 0.105 0.895 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -2.803 -15.064 -10.152 18.381 hybrid contribution 0.213 1.790 -0.415 1.850 sum -2.590 -13.274 -10.568 17.163 Atomic orbital electron populations 1.20439 0.87595 1.04090 1.02778 1.20721 0.94305 0.87038 1.01067 1.19188 0.92466 0.94112 1.16574 1.19933 1.02840 0.92442 0.95112 1.20595 0.77534 0.82219 0.90999 1.90656 1.52455 1.53398 1.46409 1.46010 1.66547 1.12284 1.10823 1.20944 0.99788 0.94214 0.80940 1.19038 0.86818 0.92213 0.99442 1.20312 1.17907 1.19538 0.96079 0.92226 1.24987 0.96788 0.96391 0.94899 1.69978 1.38624 1.40430 1.02045 0.86691 0.81480 0.81467 0.78539 1.20308 1.21311 1.20088 1.23011 1.00253 1.00556 1.00985 1.22463 1.04789 1.01147 0.89773 1.23690 0.97618 0.91971 0.98910 1.77299 0.96491 1.12973 1.25736 1.48261 1.04015 1.05693 1.58135 1.21762 1.00953 0.78197 1.02882 0.90355 0.91298 0.89545 0.88972 0.88351 0.76612 0.91673 0.94444 0.92826 0.90433 0.91788 0.91910 0.89568 0.80219 0.91071 0.89491 0.89770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.90 9.80 36.01 0.35 -0.55 16 2 C 0.10 1.29 6.93 -82.27 -0.57 0.72 16 3 C -0.21 -3.11 4.59 -105.06 -0.48 -3.59 16 4 C -0.06 -0.83 5.73 -29.04 -0.17 -1.00 16 5 C 0.50 9.10 7.82 -10.98 -0.09 9.02 16 6 O -0.55 -12.30 16.03 5.56 0.09 -12.21 16 7 N -0.71 -13.32 5.48 -60.30 -0.33 -13.65 16 8 C 0.16 3.70 5.50 -4.05 -0.02 3.68 16 9 C 0.03 0.60 1.47 -155.66 -0.23 0.37 16 10 C -0.50 -12.72 8.59 -34.44 -0.30 -13.02 16 11 H 0.06 1.47 7.82 -52.48 -0.41 1.06 16 12 C 0.07 1.94 5.43 -17.82 -0.10 1.84 16 13 N -0.87 -24.23 12.65 55.43 0.70 -23.53 16 14 Si 0.89 20.43 29.54 -169.99 -5.02 15.40 16 15 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 16 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 17 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 18 C -0.21 -4.33 9.96 -26.69 -0.27 -4.59 16 19 C -0.14 -3.28 9.14 -26.69 -0.24 -3.53 16 20 C 0.06 0.96 11.96 -17.37 -0.21 0.75 16 21 N -0.30 -4.76 12.58 30.62 0.39 -4.37 16 22 N -0.38 -5.08 4.01 -63.88 -0.26 -5.33 16 23 C 0.10 0.88 11.27 59.85 0.67 1.55 16 24 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.07 0.58 7.08 -51.93 -0.37 0.21 16 26 H 0.09 0.96 7.89 -51.93 -0.41 0.55 16 27 H 0.09 0.99 8.01 -51.93 -0.42 0.58 16 28 H 0.10 1.15 8.14 -51.92 -0.42 0.73 16 29 H 0.40 6.78 8.33 -40.82 -0.34 6.44 16 30 H 0.06 1.69 8.14 -51.93 -0.42 1.27 16 31 H 0.04 0.84 8.09 -51.92 -0.42 0.42 16 32 H 0.26 7.01 8.32 -40.82 -0.34 6.67 16 33 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 34 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 35 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 36 H 0.09 2.11 8.14 -51.93 -0.42 1.69 16 37 H 0.18 2.25 8.06 -52.49 -0.42 1.83 16 38 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.08 0.54 7.05 -51.93 -0.37 0.18 16 LS Contribution 343.75 15.07 5.18 5.18 Total: -1.00 -32.88 343.75 -6.99 -39.87 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: -6.09 Total: 7.00 kcal Atomic # 6 Polarization: -6.72 SS G_CDS: -1.64 Total: -8.35 kcal Atomic # 7 Polarization: -47.38 SS G_CDS: 0.50 Total: -46.88 kcal Atomic # 8 Polarization: -12.30 SS G_CDS: 0.09 Total: -12.21 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.88 -6.99 -39.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352648255.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.408 kcal (2) G-P(sol) polarization free energy of solvation -32.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds