Wall clock time and date at job start Mon Mar 30 2020 02:09:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35309 * 126.13148 * 2 1 4 4 C 1.50701 * 126.03439 * 0.02562 * 3 2 1 5 5 C 1.50698 * 109.47364 * 85.00178 * 4 3 2 6 6 O 1.21277 * 120.00330 * 359.97438 * 5 4 3 7 7 N 1.34782 * 120.00135 * 180.02562 * 5 4 3 8 8 C 1.46495 * 120.00258 * 180.02562 * 7 5 4 9 9 C 1.52992 * 109.47269 * 184.79147 * 8 7 5 10 10 C 1.50694 * 115.55114 * 294.81128 * 9 8 7 11 11 H 1.08008 * 119.99906 * 95.20873 * 10 9 8 12 12 C 1.37875 * 120.00314 * 274.92789 * 10 9 8 13 13 N 1.31509 * 119.99913 * 355.42420 * 12 10 9 14 14 Si 1.86807 * 120.00040 * 175.41703 * 12 10 9 15 15 H 1.48494 * 109.47052 * 60.00642 * 14 12 10 16 16 H 1.48500 * 109.47055 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47106 * 300.00083 * 14 12 10 18 18 C 1.53003 * 117.49834 * 80.48431 * 9 8 7 19 19 C 1.53006 * 117.49908 * 149.14426 * 9 8 7 20 20 C 1.39861 * 107.92616 * 180.28152 * 3 2 1 21 21 N 1.30840 * 108.19782 * 359.55639 * 20 3 2 22 22 N 1.34950 * 126.12438 * 180.02562 * 2 1 3 23 23 C 1.46503 * 126.03945 * 359.96472 * 22 2 1 24 24 H 1.09000 * 109.46958 * 90.00155 * 1 2 3 25 25 H 1.09004 * 109.47439 * 210.00287 * 1 2 3 26 26 H 1.09002 * 109.47267 * 329.99784 * 1 2 3 27 27 H 1.09005 * 109.47271 * 324.99400 * 4 3 2 28 28 H 1.09009 * 109.47018 * 205.00151 * 4 3 2 29 29 H 0.96999 * 119.99637 * 359.97438 * 7 5 4 30 30 H 1.09001 * 109.47395 * 64.78624 * 8 7 5 31 31 H 1.09007 * 109.47080 * 304.78945 * 8 7 5 32 32 H 0.97001 * 119.99960 * 184.99387 * 13 12 10 33 33 H 1.09003 * 117.50034 * 214.99852 * 18 9 8 34 34 H 1.09002 * 117.49971 * 0.02686 * 18 9 8 35 35 H 1.08996 * 117.49810 * 359.97342 * 19 9 8 36 36 H 1.08995 * 117.50078 * 144.97442 * 19 9 8 37 37 H 1.07997 * 125.90527 * 179.73443 * 20 3 2 38 38 H 1.08990 * 109.47349 * 89.99530 * 23 22 2 39 39 H 1.09003 * 109.46847 * 209.99948 * 23 22 2 40 40 H 1.09004 * 109.46913 * 329.99493 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0928 0.0000 4 6 1.8433 2.5274 0.0005 5 6 1.5721 2.9674 1.4161 6 8 1.7369 2.1923 2.3342 7 7 1.1454 4.2221 1.6619 8 6 0.8823 4.6500 3.0380 9 6 0.3001 6.0647 3.0297 10 6 1.2238 7.1448 2.5286 11 1 1.1806 7.4557 1.4951 12 6 2.1201 7.7402 3.3906 13 7 2.1081 7.4305 4.6687 14 14 3.3517 8.9866 2.7431 15 1 2.6255 10.1301 2.1348 16 1 4.1965 9.4752 3.8624 17 1 4.2127 8.3448 1.7173 18 6 -1.1917 6.2130 2.7240 19 6 -0.6764 6.4334 4.1485 20 6 3.6334 0.6559 -0.0065 21 7 3.6333 -0.6525 -0.0007 22 7 2.3026 -1.0900 -0.0005 23 6 1.8539 -2.4847 -0.0004 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8900 0.5139 26 1 -0.3634 0.8900 0.5139 27 1 0.9305 2.6157 -0.5887 28 1 2.6186 3.1587 -0.4339 29 1 1.0133 4.8419 0.9276 30 1 1.8133 4.6435 3.6049 31 1 0.1703 3.9668 3.5011 32 1 2.6884 7.9012 5.2872 33 1 -1.5050 7.0917 2.1603 34 1 -1.7584 5.3025 2.5291 35 1 -0.9044 5.6678 4.8901 36 1 -0.6505 7.4570 4.5221 37 1 4.5083 1.2890 -0.0122 38 1 1.7420 -2.8304 -1.0279 39 1 2.5901 -3.1031 0.5130 40 1 0.8956 -2.5580 0.5140 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352648255.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:26 Heat of formation + Delta-G solvation = 33.997672 kcal Electronic energy + Delta-G solvation = -21241.024282 eV Core-core repulsion = 18057.172941 eV Total energy + Delta-G solvation = -3183.851341 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.26732 -40.34706 -38.39532 -34.81422 -34.57089 -33.92811 -33.76411 -30.67602 -28.18751 -27.55019 -27.24167 -25.83480 -22.91902 -21.96009 -21.33263 -21.12942 -20.12183 -18.29295 -17.64517 -17.42456 -16.68793 -16.44867 -16.35032 -16.15473 -15.47979 -15.17525 -14.76276 -14.51412 -14.19982 -14.02391 -13.80336 -13.60023 -13.41288 -13.30165 -13.12517 -12.94871 -12.88064 -12.76431 -12.51183 -12.36364 -11.98978 -11.50951 -11.37210 -10.90651 -10.81069 -10.40203 -10.14179 -9.99847 -9.73756 -9.19034 -8.06120 -6.20337 0.94083 1.46031 1.48117 1.53859 1.68245 1.77848 1.90542 2.44894 2.67228 3.22316 3.56434 3.64776 3.82745 4.13334 4.18537 4.28680 4.37382 4.38218 4.44198 4.55768 4.59798 4.64224 4.69998 4.75595 4.77844 4.83120 5.02592 5.04005 5.08006 5.11291 5.28959 5.32179 5.60844 5.67098 5.72673 5.78206 5.82477 6.19943 6.40341 6.76224 6.86798 6.94658 7.49538 7.55876 9.00672 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024974 B = 0.004008 C = 0.003673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.893427 B = 6983.530170 C = 7621.624705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.094 3.906 3 C -0.241 4.241 4 C -0.048 4.048 5 C 0.502 3.498 6 O -0.596 6.596 7 N -0.702 5.702 8 C 0.181 3.819 9 C 0.005 3.995 10 C -0.503 4.503 11 H 0.067 0.933 12 C 0.023 3.977 13 N -0.910 5.910 14 Si 0.949 3.051 15 H -0.269 1.269 16 H -0.295 1.295 17 H -0.270 1.270 18 C -0.174 4.174 19 C -0.158 4.158 20 C 0.047 3.953 21 N -0.339 5.339 22 N -0.381 5.381 23 C 0.092 3.908 24 H 0.107 0.893 25 H 0.085 0.915 26 H 0.075 0.925 27 H 0.126 0.874 28 H 0.118 0.882 29 H 0.412 0.588 30 H 0.019 0.981 31 H 0.034 0.966 32 H 0.257 0.743 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.066 0.934 36 H 0.063 0.937 37 H 0.191 0.809 38 H 0.093 0.907 39 H 0.087 0.913 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.042 -13.780 -13.421 19.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.034 4.034 3 C -0.252 4.252 4 C -0.088 4.088 5 C 0.290 3.710 6 O -0.477 6.477 7 N -0.352 5.352 8 C 0.057 3.943 9 C 0.004 3.996 10 C -0.541 4.541 11 H 0.085 0.915 12 C -0.178 4.178 13 N -0.548 5.548 14 Si 0.776 3.224 15 H -0.194 1.194 16 H -0.221 1.221 17 H -0.195 1.195 18 C -0.211 4.211 19 C -0.197 4.197 20 C -0.138 4.138 21 N -0.160 5.160 22 N -0.164 5.164 23 C -0.048 4.048 24 H 0.126 0.874 25 H 0.103 0.897 26 H 0.094 0.906 27 H 0.144 0.856 28 H 0.136 0.864 29 H 0.248 0.752 30 H 0.037 0.963 31 H 0.052 0.948 32 H 0.066 0.934 33 H 0.104 0.896 34 H 0.108 0.892 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.208 0.792 38 H 0.112 0.888 39 H 0.106 0.894 40 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -4.112 -15.557 -12.600 20.438 hybrid contribution 0.573 1.849 0.339 1.966 sum -3.539 -13.708 -12.261 18.729 Atomic orbital electron populations 1.20558 0.85080 1.04342 1.04705 1.21318 0.95918 0.86822 0.99385 1.19445 0.92571 0.95025 1.18209 1.19920 1.05029 0.92121 0.91772 1.21460 0.75778 0.81137 0.92626 1.90636 1.54157 1.54526 1.48415 1.45896 1.66738 1.13012 1.09545 1.20476 0.97287 0.94012 0.82572 1.19063 0.88174 0.91943 1.00433 1.20675 1.17738 1.19408 0.96286 0.91490 1.25719 0.98546 0.98435 0.95068 1.70117 1.39699 1.41778 1.03172 0.85750 0.79372 0.79610 0.77714 1.19355 1.22080 1.19482 1.22996 0.97882 1.01814 0.98379 1.22382 1.06193 0.99959 0.91129 1.24021 0.98592 0.92208 0.98998 1.77216 0.98298 1.13435 1.27063 1.48668 1.03329 1.07318 1.57132 1.22148 1.01905 0.75998 1.04732 0.87438 0.89673 0.90641 0.85571 0.86374 0.75243 0.96263 0.94761 0.93358 0.89597 0.89222 0.91573 0.91871 0.79209 0.88850 0.89443 0.87519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.49 9.80 71.24 0.70 -0.79 16 2 C 0.09 2.35 6.93 41.40 0.29 2.64 16 3 C -0.24 -6.73 4.59 -20.15 -0.09 -6.82 16 4 C -0.05 -1.18 5.73 29.10 0.17 -1.01 16 5 C 0.50 17.72 7.82 87.66 0.69 18.41 16 6 O -0.60 -26.77 16.03 -3.02 -0.05 -26.81 16 7 N -0.70 -25.65 5.48 -463.07 -2.54 -28.18 16 8 C 0.18 8.21 5.50 86.38 0.48 8.69 16 9 C 0.00 0.21 1.47 -52.93 -0.08 0.13 16 10 C -0.50 -25.25 8.59 25.60 0.22 -25.03 16 11 H 0.07 3.19 7.82 -2.91 -0.02 3.17 16 12 C 0.02 1.20 5.43 84.65 0.46 1.66 16 13 N -0.91 -51.61 12.65 21.45 0.27 -51.34 16 14 Si 0.95 41.89 29.54 68.60 2.03 43.92 16 15 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 16 H -0.29 -13.24 7.11 99.48 0.71 -12.54 16 17 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 18 C -0.17 -6.74 9.96 30.62 0.30 -6.44 16 19 C -0.16 -7.23 9.14 30.62 0.28 -6.95 16 20 C 0.05 1.38 11.96 85.23 1.02 2.40 16 21 N -0.34 -10.48 12.58 -57.03 -0.72 -11.20 16 22 N -0.38 -9.69 4.01 -356.03 -1.43 -11.12 16 23 C 0.09 1.36 11.27 127.77 1.44 2.80 16 24 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 25 H 0.08 1.14 7.08 -2.38 -0.02 1.13 16 26 H 0.07 1.47 7.89 -2.39 -0.02 1.45 16 27 H 0.13 2.24 8.01 -2.38 -0.02 2.22 16 28 H 0.12 2.45 8.14 -2.38 -0.02 2.43 16 29 H 0.41 13.06 8.33 -92.71 -0.77 12.29 16 30 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.03 1.55 8.09 -2.38 -0.02 1.53 16 32 H 0.26 14.18 8.32 -92.71 -0.77 13.41 16 33 H 0.09 3.21 8.14 -2.39 -0.02 3.19 16 34 H 0.09 3.04 8.14 -2.39 -0.02 3.02 16 35 H 0.07 2.92 8.14 -2.39 -0.02 2.90 16 36 H 0.06 3.15 8.14 -2.39 -0.02 3.13 16 37 H 0.19 4.79 8.06 -2.91 -0.02 4.77 16 38 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.11 1.07 7.05 -2.39 -0.02 1.06 16 Total: -1.00 -72.68 343.75 3.70 -68.98 By element: Atomic # 1 Polarization: 25.80 SS G_CDS: 0.27 Total: 26.06 kcal Atomic # 6 Polarization: -16.18 SS G_CDS: 5.87 Total: -10.31 kcal Atomic # 7 Polarization: -97.43 SS G_CDS: -4.41 Total: -101.84 kcal Atomic # 8 Polarization: -26.77 SS G_CDS: -0.05 Total: -26.81 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 2.03 Total: 43.92 kcal Total: -72.68 3.70 -68.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352648255.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.982 kcal (2) G-P(sol) polarization free energy of solvation -72.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.985 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds