Wall clock time and date at job start Mon Mar 30 2020 01:57:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.35121 * 125.55703 * 2 1 4 4 C 1.40982 * 108.24277 * 180.02562 * 3 2 1 5 5 N 1.33308 * 126.35603 * 179.97438 * 4 3 2 6 6 C 1.32905 * 120.00034 * 0.04170 * 5 4 3 7 7 O 1.21598 * 120.00179 * 359.97438 * 6 5 4 8 8 C 1.50701 * 119.99916 * 179.97438 * 6 5 4 9 9 C 1.52997 * 109.47212 * 179.97438 * 8 6 5 10 10 H 1.09003 * 115.54795 * 29.32506 * 9 8 6 11 11 C 1.53000 * 117.50165 * 243.62141 * 9 8 6 12 12 C 1.52994 * 59.99907 * 252.50793 * 11 9 8 13 13 H 1.09002 * 117.49788 * 107.49222 * 12 11 9 14 14 C 1.53003 * 117.51972 * 252.51306 * 12 11 9 15 15 N 1.37278 * 107.28572 * 0.23672 * 4 3 2 16 16 H 0.97001 * 126.34801 * 179.75488 * 15 4 3 17 17 N 1.36345 * 125.54607 * 180.02562 * 2 1 3 18 18 C 1.46495 * 125.86452 * 359.97438 * 17 2 1 19 19 C 1.50697 * 109.47333 * 84.99655 * 18 17 2 20 20 H 1.07999 * 120.00296 * 0.02562 * 19 18 17 21 21 C 1.37881 * 120.00037 * 179.97438 * 19 18 17 22 22 N 1.31514 * 120.00158 * 180.02562 * 21 19 18 23 23 Si 1.86803 * 119.99729 * 0.02562 * 21 19 18 24 24 H 1.48510 * 109.46957 * 90.00295 * 23 21 19 25 25 H 1.48500 * 109.47078 * 209.99447 * 23 21 19 26 26 H 1.48492 * 109.47229 * 330.00037 * 23 21 19 27 27 H 1.09001 * 109.47268 * 89.96835 * 1 2 3 28 28 H 1.08993 * 109.47565 * 209.97368 * 1 2 3 29 29 H 1.09006 * 109.47242 * 329.97422 * 1 2 3 30 30 H 1.08001 * 125.87864 * 0.04929 * 3 2 1 31 31 H 1.09002 * 109.47060 * 299.99504 * 8 6 5 32 32 H 1.09001 * 109.47380 * 59.99591 * 8 6 5 33 33 H 1.09001 * 117.49810 * 359.97438 * 11 9 8 34 34 H 1.08995 * 117.50134 * 145.01745 * 11 9 8 35 35 H 1.09004 * 109.46763 * 128.62873 * 14 12 11 36 36 H 1.08992 * 109.47413 * 248.63340 * 14 12 11 37 37 H 1.09002 * 109.46873 * 8.63481 * 14 12 11 38 38 H 1.09002 * 109.47215 * 205.00394 * 18 17 2 39 39 H 1.09001 * 109.47161 * 324.99223 * 18 17 2 40 40 H 0.96993 * 119.99993 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2927 1.0993 0.0000 4 6 3.6386 0.6797 -0.0006 5 7 4.7126 1.4694 -0.0013 6 6 4.5660 2.7904 -0.0006 7 8 3.4524 3.2786 0.0002 8 6 5.7801 3.6832 -0.0007 9 6 5.3365 5.1474 -0.0005 10 1 4.3797 5.3486 0.4814 11 6 5.7084 5.9985 -1.2163 12 6 6.4255 6.2155 0.1177 13 1 7.4581 5.8752 0.1952 14 6 6.0883 7.4844 0.9033 15 7 3.6379 -0.6931 -0.0064 16 1 4.4189 -1.2684 -0.0115 17 7 2.2996 -1.1094 -0.0005 18 6 1.8326 -2.4979 -0.0006 19 6 1.5545 -2.9343 -1.4159 20 1 1.7104 -2.2463 -2.2337 21 6 1.1019 -4.2123 -1.6670 22 7 0.8597 -4.5933 -2.9022 23 14 0.8329 -5.4025 -0.2526 24 1 -0.5607 -5.2737 0.2444 25 1 1.0638 -6.7917 -0.7239 26 1 1.7813 -5.0883 0.8460 27 1 -0.3634 0.0006 -1.0277 28 1 -0.3634 -0.8901 0.5134 29 1 -0.3634 0.8898 0.5143 30 1 1.9488 2.1231 0.0008 31 1 6.3776 3.4841 0.8889 32 1 6.3769 3.4848 -0.8911 33 1 6.2696 5.5154 -2.0162 34 1 4.9963 6.7598 -1.5346 35 1 5.8322 7.2193 1.9292 36 1 6.9507 8.1509 0.9047 37 1 5.2415 7.9869 0.4358 38 1 2.5997 -3.1393 0.4334 39 1 0.9191 -2.5740 0.5893 40 1 0.5410 -5.4922 -3.0787 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355507082.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:26 Heat of formation + Delta-G solvation = 77.371167 kcal Electronic energy + Delta-G solvation = -20713.303832 eV Core-core repulsion = 17531.333307 eV Total energy + Delta-G solvation = -3181.970525 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.02709 -38.88123 -37.33764 -34.38229 -33.11203 -32.31975 -31.16167 -30.19259 -27.80980 -27.60274 -26.77915 -23.02422 -22.06430 -21.00338 -20.06382 -19.73809 -18.91037 -17.47583 -16.92156 -15.80668 -15.51252 -15.15005 -14.89005 -14.41003 -14.27153 -14.08425 -13.45709 -13.14790 -13.03359 -12.89692 -12.78107 -12.68943 -12.33961 -12.26721 -11.99850 -11.90697 -11.46132 -11.31268 -11.08312 -11.05291 -10.68745 -10.07104 -9.88610 -9.66726 -9.54956 -9.25108 -9.07591 -8.93192 -8.34267 -6.97220 -6.54540 -4.63144 1.56596 1.92701 2.91814 2.93520 2.98025 3.04732 3.82455 3.94423 4.11164 4.35759 4.60049 4.73619 4.91499 4.97123 4.98347 5.19344 5.31953 5.43297 5.60602 5.64700 5.73769 5.74803 5.75564 5.88216 5.95715 5.96693 5.98336 6.06530 6.08402 6.20438 6.24801 6.27510 6.54371 6.55905 6.68197 6.89913 7.37828 7.55521 7.82600 8.02124 8.32525 8.48964 8.97677 9.37806 10.56955 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.042710 B = 0.003083 C = 0.003038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.428247 B = 9079.014733 C = 9213.007028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.192 3.808 3 C -0.330 4.330 4 C 0.474 3.526 5 N -0.704 5.704 6 C 0.495 3.505 7 O -0.585 6.585 8 C -0.083 4.083 9 C -0.130 4.130 10 H 0.115 0.885 11 C -0.176 4.176 12 C -0.162 4.162 13 H 0.101 0.899 14 C -0.120 4.120 15 N -0.466 5.466 16 H 0.446 0.554 17 N -0.339 5.339 18 C 0.227 3.773 19 C -0.563 4.563 20 H 0.085 0.915 21 C 0.084 3.916 22 N -0.875 5.875 23 Si 0.873 3.127 24 H -0.268 1.268 25 H -0.277 1.277 26 H -0.265 1.265 27 H 0.094 0.906 28 H 0.078 0.922 29 H 0.088 0.912 30 H 0.185 0.815 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.058 0.942 36 H 0.056 0.944 37 H 0.054 0.946 38 H 0.049 0.951 39 H 0.059 0.941 40 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.424 11.419 7.684 14.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.066 3.934 3 C -0.362 4.362 4 C 0.225 3.775 5 N -0.468 5.468 6 C 0.281 3.719 7 O -0.467 6.467 8 C -0.123 4.123 9 C -0.148 4.148 10 H 0.133 0.867 11 C -0.213 4.213 12 C -0.181 4.181 13 H 0.119 0.881 14 C -0.177 4.177 15 N -0.188 5.188 16 H 0.293 0.707 17 N -0.125 5.125 18 C 0.109 3.891 19 C -0.600 4.600 20 H 0.103 0.897 21 C -0.122 4.122 22 N -0.510 5.510 23 Si 0.698 3.302 24 H -0.193 1.193 25 H -0.202 1.202 26 H -0.190 1.190 27 H 0.113 0.887 28 H 0.097 0.903 29 H 0.106 0.894 30 H 0.202 0.798 31 H 0.105 0.895 32 H 0.102 0.898 33 H 0.109 0.891 34 H 0.109 0.891 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.067 0.933 39 H 0.077 0.923 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.600 10.864 7.554 14.009 hybrid contribution -0.187 -0.991 0.370 1.075 sum 4.413 9.873 7.924 13.407 Atomic orbital electron populations 1.20619 0.86206 1.03766 1.04631 1.21375 0.94517 0.85439 0.92068 1.22293 0.91169 1.00307 1.22396 1.19226 0.91818 0.82008 0.84441 1.68760 1.28062 1.05683 1.44274 1.20690 0.89300 0.86302 0.75560 1.90508 1.27481 1.79192 1.49545 1.20759 0.96864 0.91261 1.03391 1.22254 0.99483 0.90956 1.02121 0.86715 1.23160 1.03238 1.03435 0.91475 1.22410 0.97514 0.98040 1.00096 0.88124 1.21333 1.01111 0.95576 0.99703 1.44456 0.98529 1.05333 1.70477 0.70706 1.47368 0.93091 1.07515 1.64545 1.20323 0.95977 0.72490 1.00261 1.21204 1.48294 0.99911 0.90631 0.89683 1.24815 0.94002 0.97514 0.95874 1.69851 1.42618 1.19628 1.18944 0.86919 0.79587 0.81388 0.82301 1.19287 1.20222 1.18972 0.88748 0.90328 0.89374 0.79807 0.89496 0.89767 0.89118 0.89127 0.92331 0.92542 0.92664 0.93348 0.92296 0.91681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.28 10.09 36.00 0.36 -0.92 16 2 C 0.19 3.37 6.93 -81.70 -0.57 2.80 16 3 C -0.33 -6.31 9.40 -39.65 -0.37 -6.68 16 4 C 0.47 9.37 8.07 -155.19 -1.25 8.12 16 5 N -0.70 -14.07 10.51 -11.59 -0.12 -14.19 16 6 C 0.50 9.61 7.71 -11.81 -0.09 9.52 16 7 O -0.58 -12.42 12.47 5.28 0.07 -12.36 16 8 C -0.08 -1.25 6.06 -27.88 -0.17 -1.42 16 9 C -0.13 -1.79 5.13 -90.62 -0.47 -2.26 16 10 H 0.11 1.79 7.30 -51.93 -0.38 1.41 16 11 C -0.18 -2.11 9.82 -26.73 -0.26 -2.38 16 12 C -0.16 -1.79 6.13 -90.62 -0.56 -2.35 16 13 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 14 C -0.12 -1.13 10.19 37.16 0.38 -0.75 16 15 N -0.47 -8.41 7.37 31.32 0.23 -8.18 16 16 H 0.45 6.97 8.96 -182.55 -1.64 5.34 16 17 N -0.34 -6.31 3.63 -58.03 -0.21 -6.52 16 18 C 0.23 4.42 4.99 -5.20 -0.03 4.39 16 19 C -0.56 -13.56 9.94 -34.44 -0.34 -13.91 16 20 H 0.09 2.36 8.06 -52.49 -0.42 1.94 16 21 C 0.08 2.09 5.47 -17.82 -0.10 1.99 16 22 N -0.88 -23.73 13.96 55.43 0.77 -22.95 16 23 Si 0.87 17.75 27.47 -169.99 -4.67 13.08 16 24 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 25 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 26 H -0.27 -5.04 6.54 56.52 0.37 -4.67 16 27 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 28 H 0.08 1.00 7.14 -51.93 -0.37 0.63 16 29 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.19 3.66 5.77 -52.49 -0.30 3.35 16 31 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.08 1.20 7.87 -51.93 -0.41 0.79 16 33 H 0.09 1.04 8.03 -51.93 -0.42 0.62 16 34 H 0.09 1.03 8.05 -51.93 -0.42 0.61 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.05 0.51 7.90 -51.93 -0.41 0.10 16 38 H 0.05 0.91 7.20 -51.93 -0.37 0.53 16 39 H 0.06 1.05 6.61 -51.93 -0.34 0.71 16 40 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 LS Contribution 336.15 15.07 5.07 5.07 Total: -1.00 -29.79 336.15 -9.51 -39.30 By element: Atomic # 1 Polarization: 17.79 SS G_CDS: -7.19 Total: 10.60 kcal Atomic # 6 Polarization: -0.38 SS G_CDS: -3.46 Total: -3.84 kcal Atomic # 7 Polarization: -52.52 SS G_CDS: 0.67 Total: -51.85 kcal Atomic # 8 Polarization: -12.42 SS G_CDS: 0.07 Total: -12.36 kcal Atomic # 14 Polarization: 17.75 SS G_CDS: -4.67 Total: 13.08 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -29.79 -9.51 -39.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355507082.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.673 kcal (2) G-P(sol) polarization free energy of solvation -29.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.302 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds