Wall clock time and date at job start Mon Mar 30 2020 01:57:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.35121 * 125.55703 * 2 1 4 4 C 1.40982 * 108.24277 * 180.02562 * 3 2 1 5 5 N 1.33308 * 126.35603 * 179.97438 * 4 3 2 6 6 C 1.32905 * 120.00034 * 0.04170 * 5 4 3 7 7 O 1.21598 * 120.00179 * 359.97438 * 6 5 4 8 8 C 1.50701 * 119.99916 * 179.97438 * 6 5 4 9 9 C 1.52997 * 109.47212 * 179.97438 * 8 6 5 10 10 H 1.09003 * 115.54795 * 29.32506 * 9 8 6 11 11 C 1.53000 * 117.50165 * 243.62141 * 9 8 6 12 12 C 1.52994 * 59.99907 * 252.50793 * 11 9 8 13 13 H 1.09002 * 117.49788 * 107.49222 * 12 11 9 14 14 C 1.53003 * 117.51972 * 252.51306 * 12 11 9 15 15 N 1.37278 * 107.28572 * 0.23672 * 4 3 2 16 16 H 0.97001 * 126.34801 * 179.75488 * 15 4 3 17 17 N 1.36345 * 125.54607 * 180.02562 * 2 1 3 18 18 C 1.46495 * 125.86452 * 359.97438 * 17 2 1 19 19 C 1.50697 * 109.47333 * 84.99655 * 18 17 2 20 20 H 1.07999 * 120.00296 * 0.02562 * 19 18 17 21 21 C 1.37881 * 120.00037 * 179.97438 * 19 18 17 22 22 N 1.31514 * 120.00158 * 180.02562 * 21 19 18 23 23 Si 1.86803 * 119.99729 * 0.02562 * 21 19 18 24 24 H 1.48510 * 109.46957 * 90.00295 * 23 21 19 25 25 H 1.48500 * 109.47078 * 209.99447 * 23 21 19 26 26 H 1.48492 * 109.47229 * 330.00037 * 23 21 19 27 27 H 1.09001 * 109.47268 * 89.96835 * 1 2 3 28 28 H 1.08993 * 109.47565 * 209.97368 * 1 2 3 29 29 H 1.09006 * 109.47242 * 329.97422 * 1 2 3 30 30 H 1.08001 * 125.87864 * 0.04929 * 3 2 1 31 31 H 1.09002 * 109.47060 * 299.99504 * 8 6 5 32 32 H 1.09001 * 109.47380 * 59.99591 * 8 6 5 33 33 H 1.09001 * 117.49810 * 359.97438 * 11 9 8 34 34 H 1.08995 * 117.50134 * 145.01745 * 11 9 8 35 35 H 1.09004 * 109.46763 * 128.62873 * 14 12 11 36 36 H 1.08992 * 109.47413 * 248.63340 * 14 12 11 37 37 H 1.09002 * 109.46873 * 8.63481 * 14 12 11 38 38 H 1.09002 * 109.47215 * 205.00394 * 18 17 2 39 39 H 1.09001 * 109.47161 * 324.99223 * 18 17 2 40 40 H 0.96993 * 119.99993 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2927 1.0993 0.0000 4 6 3.6386 0.6797 -0.0006 5 7 4.7126 1.4694 -0.0013 6 6 4.5660 2.7904 -0.0006 7 8 3.4524 3.2786 0.0002 8 6 5.7801 3.6832 -0.0007 9 6 5.3365 5.1474 -0.0005 10 1 4.3797 5.3486 0.4814 11 6 5.7084 5.9985 -1.2163 12 6 6.4255 6.2155 0.1177 13 1 7.4581 5.8752 0.1952 14 6 6.0883 7.4844 0.9033 15 7 3.6379 -0.6931 -0.0064 16 1 4.4189 -1.2684 -0.0115 17 7 2.2996 -1.1094 -0.0005 18 6 1.8326 -2.4979 -0.0006 19 6 1.5545 -2.9343 -1.4159 20 1 1.7104 -2.2463 -2.2337 21 6 1.1019 -4.2123 -1.6670 22 7 0.8597 -4.5933 -2.9022 23 14 0.8329 -5.4025 -0.2526 24 1 -0.5607 -5.2737 0.2444 25 1 1.0638 -6.7917 -0.7239 26 1 1.7813 -5.0883 0.8460 27 1 -0.3634 0.0006 -1.0277 28 1 -0.3634 -0.8901 0.5134 29 1 -0.3634 0.8898 0.5143 30 1 1.9488 2.1231 0.0008 31 1 6.3776 3.4841 0.8889 32 1 6.3769 3.4848 -0.8911 33 1 6.2696 5.5154 -2.0162 34 1 4.9963 6.7598 -1.5346 35 1 5.8322 7.2193 1.9292 36 1 6.9507 8.1509 0.9047 37 1 5.2415 7.9869 0.4358 38 1 2.5997 -3.1393 0.4334 39 1 0.9191 -2.5740 0.5893 40 1 0.5410 -5.4922 -3.0787 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355507082.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:26 Heat of formation + Delta-G solvation = 59.038213 kcal Electronic energy + Delta-G solvation = -20714.098808 eV Core-core repulsion = 17531.333307 eV Total energy + Delta-G solvation = -3182.765501 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.49752 -40.24562 -38.44906 -35.99773 -34.77997 -33.76251 -32.75780 -31.34689 -29.07709 -28.89502 -28.09913 -24.65940 -23.49824 -22.08752 -21.17885 -21.05069 -20.32118 -19.30876 -18.46263 -17.24220 -16.88806 -16.62613 -16.36008 -15.72341 -15.55678 -15.43612 -14.70832 -14.64410 -14.39812 -14.15555 -13.92993 -13.85957 -13.80304 -13.44639 -13.19804 -13.00715 -12.88363 -12.59865 -12.27362 -12.22835 -12.11972 -11.86517 -11.15539 -10.93526 -10.91770 -10.79177 -10.50254 -10.37293 -9.88550 -8.51962 -8.42609 -6.58044 0.08406 0.48611 1.37414 1.38874 1.44234 1.47489 2.24120 2.63242 2.81914 2.90607 2.94724 3.45426 3.62217 3.92484 4.03349 4.10546 4.18316 4.20373 4.39769 4.46127 4.51897 4.70534 4.72854 4.75841 4.86492 4.91320 4.94841 4.97147 4.99496 5.01708 5.12002 5.16323 5.22735 5.28266 5.38000 5.52938 5.87207 6.00165 6.10671 6.45866 6.54332 6.84415 7.07942 7.86734 8.72345 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.042710 B = 0.003083 C = 0.003038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.428247 B = 9079.014733 C = 9213.007028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.200 3.800 3 C -0.347 4.347 4 C 0.456 3.544 5 N -0.715 5.715 6 C 0.480 3.520 7 O -0.611 6.611 8 C -0.074 4.074 9 C -0.153 4.153 10 H 0.091 0.909 11 C -0.178 4.178 12 C -0.140 4.140 13 H 0.116 0.884 14 C -0.122 4.122 15 N -0.462 5.462 16 H 0.454 0.546 17 N -0.344 5.344 18 C 0.232 3.768 19 C -0.563 4.563 20 H 0.031 0.969 21 C 0.026 3.974 22 N -0.933 5.933 23 Si 0.946 3.054 24 H -0.253 1.253 25 H -0.287 1.287 26 H -0.235 1.235 27 H 0.092 0.908 28 H 0.094 0.906 29 H 0.116 0.884 30 H 0.175 0.825 31 H 0.100 0.900 32 H 0.093 0.907 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.059 0.941 36 H 0.075 0.925 37 H 0.053 0.947 38 H 0.067 0.933 39 H 0.091 0.909 40 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.741 11.415 9.868 15.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.074 3.926 3 C -0.379 4.379 4 C 0.207 3.793 5 N -0.479 5.479 6 C 0.267 3.733 7 O -0.495 6.495 8 C -0.113 4.113 9 C -0.172 4.172 10 H 0.109 0.891 11 C -0.215 4.215 12 C -0.158 4.158 13 H 0.134 0.866 14 C -0.179 4.179 15 N -0.185 5.185 16 H 0.303 0.697 17 N -0.131 5.131 18 C 0.114 3.886 19 C -0.601 4.601 20 H 0.050 0.950 21 C -0.175 4.175 22 N -0.571 5.571 23 Si 0.768 3.232 24 H -0.177 1.177 25 H -0.213 1.213 26 H -0.158 1.158 27 H 0.110 0.890 28 H 0.113 0.887 29 H 0.135 0.865 30 H 0.192 0.808 31 H 0.118 0.882 32 H 0.111 0.889 33 H 0.114 0.886 34 H 0.112 0.888 35 H 0.078 0.922 36 H 0.094 0.906 37 H 0.072 0.928 38 H 0.085 0.915 39 H 0.109 0.891 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.941 10.879 9.755 15.425 hybrid contribution -0.291 -0.928 -0.403 1.053 sum 4.651 9.950 9.353 14.426 Atomic orbital electron populations 1.20825 0.83368 1.06000 1.05044 1.21938 0.96118 0.84506 0.90066 1.22223 0.91443 1.00429 1.23757 1.19484 0.92315 0.82643 0.84821 1.68862 1.28285 1.06101 1.44666 1.21506 0.90396 0.86547 0.74843 1.90486 1.28798 1.79515 1.50738 1.20742 0.95111 0.91134 1.04328 1.22105 0.99836 0.90976 1.04244 0.89107 1.23250 1.03501 1.02966 0.91744 1.22537 0.97226 0.97157 0.98877 0.86643 1.21382 1.01975 0.95102 0.99404 1.44475 0.98845 1.04997 1.70219 0.69674 1.47423 0.93406 1.07654 1.64571 1.20274 0.97824 0.72945 0.97562 1.21305 1.47807 0.99156 0.91802 0.95028 1.25796 0.93422 0.99567 0.98690 1.70025 1.44719 1.20346 1.22009 0.85751 0.80800 0.77636 0.79051 1.17720 1.21274 1.15780 0.89001 0.88746 0.86533 0.80792 0.88198 0.88866 0.88561 0.88812 0.92230 0.90558 0.92804 0.91473 0.89110 0.91696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.40 10.09 71.23 0.72 -1.68 16 2 C 0.20 6.83 6.93 41.14 0.28 7.12 16 3 C -0.35 -13.38 9.40 22.22 0.21 -13.18 16 4 C 0.46 18.19 8.07 133.83 1.08 19.27 16 5 N -0.71 -28.90 10.51 -309.88 -3.26 -32.15 16 6 C 0.48 18.92 7.71 87.95 0.68 19.60 16 7 O -0.61 -26.76 12.47 -4.02 -0.05 -26.81 16 8 C -0.07 -2.20 6.06 29.85 0.18 -2.02 16 9 C -0.15 -4.18 5.13 -10.80 -0.06 -4.24 16 10 H 0.09 2.93 7.30 -2.39 -0.02 2.91 16 11 C -0.18 -4.09 9.82 30.59 0.30 -3.79 16 12 C -0.14 -2.83 6.13 -10.80 -0.07 -2.90 16 13 H 0.12 2.02 8.14 -2.39 -0.02 2.00 16 14 C -0.12 -2.05 10.19 71.98 0.73 -1.32 16 15 N -0.46 -16.51 7.37 -54.81 -0.40 -16.91 16 16 H 0.45 13.97 8.96 -213.28 -1.91 12.06 16 17 N -0.34 -12.41 3.63 -337.52 -1.23 -13.64 16 18 C 0.23 8.45 4.99 85.63 0.43 8.88 16 19 C -0.56 -27.11 9.94 25.60 0.25 -26.85 16 20 H 0.03 1.82 8.06 -2.91 -0.02 1.80 16 21 C 0.03 1.29 5.47 84.66 0.46 1.75 16 22 N -0.93 -51.81 13.96 21.45 0.30 -51.51 16 23 Si 0.95 34.92 27.47 68.60 1.88 36.81 16 24 H -0.25 -8.74 7.11 99.48 0.71 -8.04 16 25 H -0.29 -11.02 7.11 99.48 0.71 -10.32 16 26 H -0.23 -7.48 6.54 99.48 0.65 -6.83 16 27 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 28 H 0.09 2.11 7.14 -2.39 -0.02 2.09 16 29 H 0.12 2.29 8.14 -2.38 -0.02 2.27 16 30 H 0.18 7.10 5.77 -2.91 -0.02 7.09 16 31 H 0.10 2.66 8.14 -2.39 -0.02 2.64 16 32 H 0.09 2.58 7.87 -2.39 -0.02 2.56 16 33 H 0.10 2.09 8.03 -2.39 -0.02 2.07 16 34 H 0.09 2.07 8.05 -2.39 -0.02 2.05 16 35 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 36 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.05 0.92 7.90 -2.39 -0.02 0.90 16 38 H 0.07 2.26 7.20 -2.39 -0.02 2.24 16 39 H 0.09 2.83 6.61 -2.39 -0.02 2.82 16 40 H 0.27 14.14 8.31 -92.71 -0.77 13.37 16 Total: -1.00 -67.03 336.15 1.54 -65.49 By element: Atomic # 1 Polarization: 38.99 SS G_CDS: -0.92 Total: 38.08 kcal Atomic # 6 Polarization: -4.56 SS G_CDS: 5.21 Total: 0.65 kcal Atomic # 7 Polarization: -109.63 SS G_CDS: -4.59 Total: -114.22 kcal Atomic # 8 Polarization: -26.76 SS G_CDS: -0.05 Total: -26.81 kcal Atomic # 14 Polarization: 34.92 SS G_CDS: 1.88 Total: 36.81 kcal Total: -67.03 1.54 -65.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355507082.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.533 kcal (2) G-P(sol) polarization free energy of solvation -67.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds