Wall clock time and date at job start Mon Mar 30 2020 01:57:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35124 * 125.55151 * 2 1 4 4 C 1.40976 * 108.24123 * 179.97438 * 3 2 1 5 5 N 1.33309 * 126.35785 * 179.97438 * 4 3 2 6 6 C 1.32912 * 119.99908 * 0.03313 * 5 4 3 7 7 O 1.21591 * 120.00049 * 359.97438 * 6 5 4 8 8 C 1.50700 * 119.99895 * 179.97438 * 6 5 4 9 9 C 1.53003 * 109.46783 * 179.97438 * 8 6 5 10 10 H 1.08996 * 115.55178 * 330.67270 * 9 8 6 11 11 C 1.53002 * 117.49425 * 116.38033 * 9 8 6 12 12 C 1.53005 * 117.49391 * 185.00010 * 9 8 6 13 13 H 1.09004 * 117.49392 * 145.00431 * 12 9 8 14 14 C 1.52995 * 117.50319 * 359.97438 * 12 9 8 15 15 N 1.37284 * 107.28632 * 359.77656 * 4 3 2 16 16 H 0.96999 * 126.34951 * 180.24474 * 15 4 3 17 17 N 1.36342 * 125.55221 * 179.97438 * 2 1 3 18 18 C 1.46500 * 125.86268 * 359.97438 * 17 2 1 19 19 C 1.50706 * 109.46953 * 84.99515 * 18 17 2 20 20 H 1.07999 * 120.00193 * 0.02562 * 19 18 17 21 21 C 1.37879 * 119.99398 * 179.97438 * 19 18 17 22 22 N 1.31514 * 119.99350 * 180.02562 * 21 19 18 23 23 Si 1.86798 * 120.00608 * 0.02562 * 21 19 18 24 24 H 1.48493 * 109.47326 * 270.00340 * 23 21 19 25 25 H 1.48506 * 109.46545 * 30.00090 * 23 21 19 26 26 H 1.48498 * 109.47210 * 149.99801 * 23 21 19 27 27 H 1.08999 * 109.47210 * 270.02004 * 1 2 3 28 28 H 1.08996 * 109.47583 * 30.02113 * 1 2 3 29 29 H 1.09004 * 109.47077 * 150.02382 * 1 2 3 30 30 H 1.07997 * 125.87586 * 359.96389 * 3 2 1 31 31 H 1.09000 * 109.47172 * 299.99551 * 8 6 5 32 32 H 1.08998 * 109.47038 * 59.99906 * 8 6 5 33 33 H 1.08998 * 117.49920 * 214.97538 * 11 9 8 34 34 H 1.09004 * 117.50061 * 359.97438 * 11 9 8 35 35 H 1.09006 * 109.46860 * 60.00005 * 14 12 9 36 36 H 1.08990 * 109.47298 * 179.97438 * 14 12 9 37 37 H 1.08997 * 109.47440 * 300.00624 * 14 12 9 38 38 H 1.09000 * 109.47175 * 324.99944 * 18 17 2 39 39 H 1.08993 * 109.47452 * 204.99734 * 18 17 2 40 40 H 0.97005 * 119.99661 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2926 1.0994 0.0000 4 6 3.6385 0.6799 0.0006 5 7 4.7125 1.4697 0.0003 6 6 4.5659 2.7907 0.0000 7 8 3.4522 3.2788 -0.0004 8 6 5.7799 3.6835 0.0003 9 6 5.3360 5.1478 -0.0008 10 1 4.3795 5.3487 -0.4831 11 6 5.7075 5.9993 1.2149 12 6 6.4251 6.2159 -0.1190 13 1 6.1849 7.1197 -0.6791 14 6 7.8746 5.7382 -0.2265 15 7 3.6380 -0.6929 0.0061 16 1 4.4190 -1.2682 0.0111 17 7 2.2997 -1.1093 0.0005 18 6 1.8328 -2.4979 0.0016 19 6 1.5547 -2.9355 -1.4134 20 1 1.7106 -2.2482 -2.2317 21 6 1.1022 -4.2137 -1.6633 22 7 0.8600 -4.5958 -2.8982 23 14 0.8333 -5.4028 -0.2480 24 1 2.0841 -6.1620 0.0053 25 1 0.4595 -4.6433 0.9722 26 1 -0.2577 -6.3481 -0.5962 27 1 -0.3633 0.0004 1.0276 28 1 -0.3634 0.8897 -0.5141 29 1 -0.3633 -0.8902 -0.5135 30 1 1.9486 2.1231 -0.0006 31 1 6.3767 3.4851 0.8905 32 1 6.3773 3.4847 -0.8895 33 1 4.9952 6.7608 1.5326 34 1 6.2677 5.5163 2.0155 35 1 7.9865 5.1135 -1.1127 36 1 8.5365 6.6005 -0.3044 37 1 8.1334 5.1600 0.6605 38 1 0.9193 -2.5735 0.5915 39 1 2.5999 -3.1388 0.4361 40 1 0.5421 -5.4952 -3.0740 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355507083.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:29 Heat of formation + Delta-G solvation = 77.764744 kcal Electronic energy + Delta-G solvation = -20801.924479 eV Core-core repulsion = 17619.971021 eV Total energy + Delta-G solvation = -3181.953458 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.02334 -38.93776 -37.38456 -34.38027 -33.10548 -32.31759 -31.12403 -29.67852 -28.17590 -27.60287 -26.94671 -23.02554 -22.06956 -21.27409 -19.84094 -19.57880 -18.61515 -17.47599 -16.96236 -16.08879 -15.59412 -15.18985 -14.92476 -14.52514 -13.99910 -13.88161 -13.61010 -13.13170 -12.98741 -12.89246 -12.81126 -12.70565 -12.40128 -12.24982 -11.98988 -11.76176 -11.45945 -11.41089 -11.05697 -11.01034 -10.71145 -10.06684 -9.81926 -9.67677 -9.54039 -9.26555 -9.08030 -8.93347 -8.34062 -6.96844 -6.54965 -4.63725 1.56796 1.93234 2.92080 2.93098 2.97820 3.04678 3.83568 3.94091 4.11391 4.35892 4.67409 4.74062 4.80605 4.93144 5.01347 5.21180 5.32975 5.48457 5.59692 5.64911 5.75713 5.76195 5.77831 5.89569 5.93659 5.97530 5.99855 6.07320 6.11012 6.22571 6.25726 6.29363 6.53166 6.55781 6.68907 6.89545 7.38222 7.55849 7.82591 8.02141 8.32836 8.48872 8.97240 9.38074 10.56487 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.039718 B = 0.003183 C = 0.003093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.805142 B = 8794.021625 C = 9050.731159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.193 3.807 3 C -0.330 4.330 4 C 0.474 3.526 5 N -0.704 5.704 6 C 0.495 3.505 7 O -0.585 6.585 8 C -0.081 4.081 9 C -0.130 4.130 10 H 0.115 0.885 11 C -0.177 4.177 12 C -0.161 4.161 13 H 0.100 0.900 14 C -0.122 4.122 15 N -0.466 5.466 16 H 0.445 0.555 17 N -0.339 5.339 18 C 0.227 3.773 19 C -0.564 4.564 20 H 0.086 0.914 21 C 0.085 3.915 22 N -0.875 5.875 23 Si 0.873 3.127 24 H -0.270 1.270 25 H -0.263 1.263 26 H -0.276 1.276 27 H 0.083 0.917 28 H 0.091 0.909 29 H 0.092 0.908 30 H 0.185 0.815 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.060 0.940 36 H 0.055 0.945 37 H 0.056 0.944 38 H 0.064 0.936 39 H 0.044 0.956 40 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.010 10.768 7.715 14.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.067 3.933 3 C -0.362 4.362 4 C 0.225 3.775 5 N -0.468 5.468 6 C 0.281 3.719 7 O -0.468 6.468 8 C -0.120 4.120 9 C -0.149 4.149 10 H 0.133 0.867 11 C -0.214 4.214 12 C -0.180 4.180 13 H 0.118 0.882 14 C -0.179 4.179 15 N -0.189 5.189 16 H 0.293 0.707 17 N -0.125 5.125 18 C 0.110 3.890 19 C -0.601 4.601 20 H 0.104 0.896 21 C -0.122 4.122 22 N -0.510 5.510 23 Si 0.698 3.302 24 H -0.196 1.196 25 H -0.188 1.188 26 H -0.201 1.201 27 H 0.102 0.898 28 H 0.109 0.891 29 H 0.111 0.889 30 H 0.202 0.798 31 H 0.101 0.899 32 H 0.106 0.894 33 H 0.108 0.892 34 H 0.109 0.891 35 H 0.079 0.921 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.082 0.918 39 H 0.062 0.938 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.188 10.209 7.585 13.736 hybrid contribution -0.223 -0.909 0.494 1.058 sum 4.965 9.300 8.079 13.282 Atomic orbital electron populations 1.20684 0.86279 1.05413 1.03565 1.21365 0.94524 0.85373 0.92035 1.22301 0.91189 1.00323 1.22344 1.19233 0.91821 0.82018 0.84439 1.68764 1.28059 1.05679 1.44264 1.20715 0.89322 0.86320 0.75552 1.90506 1.27503 1.79201 1.49545 1.20717 0.96779 0.91192 1.03353 1.22237 0.99385 0.91199 1.02050 0.86734 1.23119 1.03439 1.03421 0.91438 1.22393 0.93901 1.00581 1.01088 0.88208 1.21333 0.93784 1.00744 1.02006 1.44469 0.98572 1.05335 1.70477 0.70728 1.47379 0.93051 1.07516 1.64598 1.20338 0.95916 0.72481 1.00312 1.21217 1.48344 0.99939 0.90643 0.89644 1.24817 0.93992 0.97518 0.95872 1.69857 1.42645 1.19538 1.18972 0.86916 0.79149 0.81759 0.82339 1.19551 1.18774 1.20148 0.89825 0.89064 0.88873 0.79822 0.89864 0.89426 0.89237 0.89100 0.92109 0.92630 0.92504 0.91847 0.93787 0.91670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.39 9.92 36.00 0.36 -1.03 16 2 C 0.19 3.39 6.93 -81.70 -0.57 2.83 16 3 C -0.33 -6.32 9.40 -39.65 -0.37 -6.70 16 4 C 0.47 9.37 8.07 -155.18 -1.25 8.12 16 5 N -0.70 -14.06 10.51 -11.59 -0.12 -14.18 16 6 C 0.49 9.60 7.71 -11.81 -0.09 9.51 16 7 O -0.59 -12.45 12.47 5.29 0.07 -12.39 16 8 C -0.08 -1.22 5.14 -27.88 -0.14 -1.36 16 9 C -0.13 -1.80 5.41 -90.61 -0.49 -2.29 16 10 H 0.11 1.80 7.30 -51.93 -0.38 1.42 16 11 C -0.18 -2.08 9.82 -26.73 -0.26 -2.35 16 12 C -0.16 -1.78 6.41 -90.62 -0.58 -2.37 16 13 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 14 C -0.12 -1.17 9.19 37.16 0.34 -0.82 16 15 N -0.47 -8.40 7.37 31.32 0.23 -8.17 16 16 H 0.45 6.93 8.96 -182.56 -1.64 5.29 16 17 N -0.34 -6.31 3.63 -58.03 -0.21 -6.52 16 18 C 0.23 4.41 4.78 -5.19 -0.02 4.38 16 19 C -0.56 -13.55 9.94 -34.44 -0.34 -13.90 16 20 H 0.09 2.37 8.06 -52.49 -0.42 1.95 16 21 C 0.08 2.09 5.47 -17.82 -0.10 1.99 16 22 N -0.87 -23.69 13.96 55.43 0.77 -22.91 16 23 Si 0.87 17.72 27.47 -169.99 -4.67 13.05 16 24 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 25 H -0.26 -4.90 6.54 56.52 0.37 -4.53 16 26 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 27 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 28 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 29 H 0.09 1.38 7.80 -51.93 -0.40 0.97 16 30 H 0.18 3.66 5.77 -52.49 -0.30 3.36 16 31 H 0.08 1.16 7.88 -51.93 -0.41 0.75 16 32 H 0.09 1.24 7.77 -51.93 -0.40 0.84 16 33 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.09 1.02 7.94 -51.93 -0.41 0.60 16 35 H 0.06 0.58 7.83 -51.93 -0.41 0.18 16 36 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.06 0.53 7.90 -51.93 -0.41 0.12 16 38 H 0.06 1.15 6.94 -51.93 -0.36 0.79 16 39 H 0.04 0.81 7.57 -51.93 -0.39 0.41 16 40 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 LS Contribution 335.09 15.07 5.05 5.05 Total: -1.00 -29.72 335.09 -9.63 -39.35 By element: Atomic # 1 Polarization: 17.92 SS G_CDS: -7.22 Total: 10.70 kcal Atomic # 6 Polarization: -0.45 SS G_CDS: -3.52 Total: -3.98 kcal Atomic # 7 Polarization: -52.46 SS G_CDS: 0.67 Total: -51.79 kcal Atomic # 8 Polarization: -12.45 SS G_CDS: 0.07 Total: -12.39 kcal Atomic # 14 Polarization: 17.72 SS G_CDS: -4.67 Total: 13.05 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -29.72 -9.63 -39.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355507083.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.116 kcal (2) G-P(sol) polarization free energy of solvation -29.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds