Wall clock time and date at job start Mon Mar 30 2020 01:57:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35124 * 125.55151 * 2 1 4 4 C 1.40976 * 108.24123 * 179.97438 * 3 2 1 5 5 N 1.33309 * 126.35785 * 179.97438 * 4 3 2 6 6 C 1.32912 * 119.99908 * 0.03313 * 5 4 3 7 7 O 1.21591 * 120.00049 * 359.97438 * 6 5 4 8 8 C 1.50700 * 119.99895 * 179.97438 * 6 5 4 9 9 C 1.53003 * 109.46783 * 179.97438 * 8 6 5 10 10 H 1.08996 * 115.55178 * 330.67270 * 9 8 6 11 11 C 1.53002 * 117.49425 * 116.38033 * 9 8 6 12 12 C 1.53005 * 117.49391 * 185.00010 * 9 8 6 13 13 H 1.09004 * 117.49392 * 145.00431 * 12 9 8 14 14 C 1.52995 * 117.50319 * 359.97438 * 12 9 8 15 15 N 1.37284 * 107.28632 * 359.77656 * 4 3 2 16 16 H 0.96999 * 126.34951 * 180.24474 * 15 4 3 17 17 N 1.36342 * 125.55221 * 179.97438 * 2 1 3 18 18 C 1.46500 * 125.86268 * 359.97438 * 17 2 1 19 19 C 1.50706 * 109.46953 * 84.99515 * 18 17 2 20 20 H 1.07999 * 120.00193 * 0.02562 * 19 18 17 21 21 C 1.37879 * 119.99398 * 179.97438 * 19 18 17 22 22 N 1.31514 * 119.99350 * 180.02562 * 21 19 18 23 23 Si 1.86798 * 120.00608 * 0.02562 * 21 19 18 24 24 H 1.48493 * 109.47326 * 270.00340 * 23 21 19 25 25 H 1.48506 * 109.46545 * 30.00090 * 23 21 19 26 26 H 1.48498 * 109.47210 * 149.99801 * 23 21 19 27 27 H 1.08999 * 109.47210 * 270.02004 * 1 2 3 28 28 H 1.08996 * 109.47583 * 30.02113 * 1 2 3 29 29 H 1.09004 * 109.47077 * 150.02382 * 1 2 3 30 30 H 1.07997 * 125.87586 * 359.96389 * 3 2 1 31 31 H 1.09000 * 109.47172 * 299.99551 * 8 6 5 32 32 H 1.08998 * 109.47038 * 59.99906 * 8 6 5 33 33 H 1.08998 * 117.49920 * 214.97538 * 11 9 8 34 34 H 1.09004 * 117.50061 * 359.97438 * 11 9 8 35 35 H 1.09006 * 109.46860 * 60.00005 * 14 12 9 36 36 H 1.08990 * 109.47298 * 179.97438 * 14 12 9 37 37 H 1.08997 * 109.47440 * 300.00624 * 14 12 9 38 38 H 1.09000 * 109.47175 * 324.99944 * 18 17 2 39 39 H 1.08993 * 109.47452 * 204.99734 * 18 17 2 40 40 H 0.97005 * 119.99661 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2926 1.0994 0.0000 4 6 3.6385 0.6799 0.0006 5 7 4.7125 1.4697 0.0003 6 6 4.5659 2.7907 0.0000 7 8 3.4522 3.2788 -0.0004 8 6 5.7799 3.6835 0.0003 9 6 5.3360 5.1478 -0.0008 10 1 4.3795 5.3487 -0.4831 11 6 5.7075 5.9993 1.2149 12 6 6.4251 6.2159 -0.1190 13 1 6.1849 7.1197 -0.6791 14 6 7.8746 5.7382 -0.2265 15 7 3.6380 -0.6929 0.0061 16 1 4.4190 -1.2682 0.0111 17 7 2.2997 -1.1093 0.0005 18 6 1.8328 -2.4979 0.0016 19 6 1.5547 -2.9355 -1.4134 20 1 1.7106 -2.2482 -2.2317 21 6 1.1022 -4.2137 -1.6633 22 7 0.8600 -4.5958 -2.8982 23 14 0.8333 -5.4028 -0.2480 24 1 2.0841 -6.1620 0.0053 25 1 0.4595 -4.6433 0.9722 26 1 -0.2577 -6.3481 -0.5962 27 1 -0.3633 0.0004 1.0276 28 1 -0.3634 0.8897 -0.5141 29 1 -0.3633 -0.8902 -0.5135 30 1 1.9486 2.1231 -0.0006 31 1 6.3767 3.4851 0.8905 32 1 6.3773 3.4847 -0.8895 33 1 4.9952 6.7608 1.5326 34 1 6.2677 5.5163 2.0155 35 1 7.9865 5.1135 -1.1127 36 1 8.5365 6.6005 -0.3044 37 1 8.1334 5.1600 0.6605 38 1 0.9193 -2.5735 0.5915 39 1 2.5999 -3.1388 0.4361 40 1 0.5421 -5.4952 -3.0740 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355507083.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:28 Heat of formation + Delta-G solvation = 59.424060 kcal Electronic energy + Delta-G solvation = -20802.719791 eV Core-core repulsion = 17619.971021 eV Total energy + Delta-G solvation = -3182.748770 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.49330 -40.28267 -38.51436 -35.99665 -34.77398 -33.75900 -32.73933 -30.88376 -29.17212 -28.88992 -28.46077 -24.66698 -23.49957 -22.30966 -21.21549 -20.86314 -19.83414 -19.30653 -18.49001 -17.36524 -16.94698 -16.75130 -16.38782 -16.00453 -15.45310 -15.12423 -14.68160 -14.64689 -14.40114 -14.25139 -13.91246 -13.81240 -13.71887 -13.52091 -13.26937 -12.97379 -12.78207 -12.61390 -12.35840 -12.25609 -12.02497 -11.84923 -11.13870 -10.94554 -10.86731 -10.74446 -10.54762 -10.36613 -9.88584 -8.51586 -8.42837 -6.58390 0.08905 0.49209 1.37623 1.38277 1.44482 1.47639 2.24080 2.64642 2.81712 2.90227 2.95611 3.48734 3.63213 3.86589 4.04449 4.10126 4.16999 4.21459 4.45191 4.47851 4.51350 4.71800 4.73686 4.75170 4.87116 4.90171 4.95007 4.99321 5.03823 5.04008 5.12113 5.17198 5.24928 5.30330 5.40271 5.51013 5.87395 6.00229 6.11066 6.46076 6.54676 6.84697 7.07724 7.86948 8.72131 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.039718 B = 0.003183 C = 0.003093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.805142 B = 8794.021625 C = 9050.731159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.201 3.799 3 C -0.348 4.348 4 C 0.456 3.544 5 N -0.714 5.714 6 C 0.479 3.521 7 O -0.611 6.611 8 C -0.069 4.069 9 C -0.157 4.157 10 H 0.088 0.912 11 C -0.173 4.173 12 C -0.142 4.142 13 H 0.110 0.890 14 C -0.123 4.123 15 N -0.463 5.463 16 H 0.454 0.546 17 N -0.345 5.345 18 C 0.232 3.768 19 C -0.564 4.564 20 H 0.031 0.969 21 C 0.027 3.973 22 N -0.934 5.934 23 Si 0.946 3.054 24 H -0.266 1.266 25 H -0.225 1.225 26 H -0.283 1.283 27 H 0.118 0.882 28 H 0.106 0.894 29 H 0.083 0.917 30 H 0.175 0.825 31 H 0.096 0.904 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.099 0.901 35 H 0.059 0.941 36 H 0.073 0.927 37 H 0.058 0.942 38 H 0.093 0.907 39 H 0.066 0.934 40 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.357 10.772 10.128 15.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.075 3.925 3 C -0.379 4.379 4 C 0.207 3.793 5 N -0.479 5.479 6 C 0.266 3.734 7 O -0.496 6.496 8 C -0.109 4.109 9 C -0.175 4.175 10 H 0.107 0.893 11 C -0.210 4.210 12 C -0.160 4.160 13 H 0.129 0.871 14 C -0.180 4.180 15 N -0.186 5.186 16 H 0.303 0.697 17 N -0.131 5.131 18 C 0.114 3.886 19 C -0.602 4.602 20 H 0.050 0.950 21 C -0.175 4.175 22 N -0.571 5.571 23 Si 0.768 3.232 24 H -0.191 1.191 25 H -0.148 1.148 26 H -0.209 1.209 27 H 0.136 0.864 28 H 0.124 0.876 29 H 0.102 0.898 30 H 0.192 0.808 31 H 0.114 0.886 32 H 0.113 0.887 33 H 0.113 0.887 34 H 0.117 0.883 35 H 0.078 0.922 36 H 0.092 0.908 37 H 0.077 0.923 38 H 0.110 0.890 39 H 0.084 0.916 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.559 10.232 10.014 15.359 hybrid contribution -0.339 -0.845 -0.353 0.976 sum 5.221 9.388 9.662 14.448 Atomic orbital electron populations 1.20872 0.83412 1.05651 1.05807 1.21934 0.96130 0.84462 0.90002 1.22219 0.91466 1.00423 1.23810 1.19490 0.92308 0.82666 0.84819 1.68866 1.28275 1.06079 1.44653 1.21532 0.90411 0.86576 0.74846 1.90483 1.28822 1.79528 1.50748 1.20673 0.94978 0.91067 1.04168 1.22084 0.99676 0.91240 1.04523 0.89327 1.23214 1.03506 1.02735 0.91517 1.22514 0.93919 0.99390 1.00184 0.87147 1.21381 0.92893 1.01575 1.02116 1.44484 0.98876 1.04984 1.70217 0.69667 1.47424 0.93371 1.07647 1.64631 1.20289 0.97751 0.72972 0.97565 1.21319 1.47850 0.99167 0.91822 0.95016 1.25797 0.93402 0.99566 0.98689 1.70030 1.44754 1.20277 1.22053 0.85754 0.78855 0.78976 0.79662 1.19088 1.14782 1.20853 0.86380 0.87555 0.89812 0.80836 0.88580 0.88747 0.88654 0.88299 0.92171 0.90781 0.92251 0.88957 0.91585 0.91682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.52 9.92 71.23 0.71 -1.82 16 2 C 0.20 6.87 6.93 41.14 0.29 7.15 16 3 C -0.35 -13.42 9.40 22.22 0.21 -13.22 16 4 C 0.46 18.18 8.07 133.82 1.08 19.26 16 5 N -0.71 -28.88 10.51 -309.88 -3.26 -32.13 16 6 C 0.48 18.93 7.71 87.95 0.68 19.60 16 7 O -0.61 -26.85 12.47 -4.00 -0.05 -26.90 16 8 C -0.07 -2.08 5.14 29.85 0.15 -1.92 16 9 C -0.16 -4.30 5.41 -10.79 -0.06 -4.36 16 10 H 0.09 2.89 7.30 -2.39 -0.02 2.87 16 11 C -0.17 -3.83 9.82 30.60 0.30 -3.53 16 12 C -0.14 -2.90 6.41 -10.79 -0.07 -2.97 16 13 H 0.11 2.02 8.14 -2.38 -0.02 2.00 16 14 C -0.12 -2.07 9.19 71.98 0.66 -1.40 16 15 N -0.46 -16.46 7.37 -54.81 -0.40 -16.87 16 16 H 0.45 13.88 8.96 -213.29 -1.91 11.97 16 17 N -0.34 -12.41 3.63 -337.50 -1.23 -13.63 16 18 C 0.23 8.45 4.78 85.63 0.41 8.86 16 19 C -0.56 -27.15 9.94 25.60 0.25 -26.90 16 20 H 0.03 1.83 8.06 -2.91 -0.02 1.81 16 21 C 0.03 1.30 5.47 84.66 0.46 1.77 16 22 N -0.93 -51.86 13.96 21.45 0.30 -51.56 16 23 Si 0.95 34.91 27.47 68.60 1.88 36.80 16 24 H -0.27 -9.62 7.11 99.48 0.71 -8.91 16 25 H -0.23 -6.91 6.54 99.48 0.65 -6.26 16 26 H -0.28 -10.72 7.11 99.48 0.71 -10.01 16 27 H 0.12 2.22 8.14 -2.39 -0.02 2.20 16 28 H 0.11 2.38 8.14 -2.39 -0.02 2.36 16 29 H 0.08 2.33 7.80 -2.38 -0.02 2.31 16 30 H 0.17 7.10 5.77 -2.91 -0.02 7.09 16 31 H 0.10 2.59 7.88 -2.39 -0.02 2.57 16 32 H 0.09 2.64 7.77 -2.39 -0.02 2.62 16 33 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.10 2.02 7.94 -2.38 -0.02 2.00 16 35 H 0.06 1.04 7.83 -2.38 -0.02 1.02 16 36 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.06 0.97 7.90 -2.39 -0.02 0.96 16 38 H 0.09 2.92 6.94 -2.39 -0.02 2.91 16 39 H 0.07 2.18 7.57 -2.39 -0.02 2.16 16 40 H 0.27 14.15 8.31 -92.70 -0.77 13.38 16 Total: -1.00 -67.18 335.09 1.40 -65.78 By element: Atomic # 1 Polarization: 38.90 SS G_CDS: -0.92 Total: 37.98 kcal Atomic # 6 Polarization: -4.54 SS G_CDS: 5.07 Total: 0.54 kcal Atomic # 7 Polarization: -109.61 SS G_CDS: -4.59 Total: -114.19 kcal Atomic # 8 Polarization: -26.85 SS G_CDS: -0.05 Total: -26.90 kcal Atomic # 14 Polarization: 34.91 SS G_CDS: 1.88 Total: 36.80 kcal Total: -67.18 1.40 -65.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355507083.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.205 kcal (2) G-P(sol) polarization free energy of solvation -67.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.781 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds