Wall clock time and date at job start Mon Mar 30 2020 01:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35128 * 125.54519 * 2 1 4 4 C 1.40985 * 108.23500 * 180.12593 * 3 2 1 5 5 N 1.33303 * 126.35497 * 179.82762 * 4 3 2 6 6 C 1.32904 * 120.00133 * 359.68443 * 5 4 3 7 7 O 1.21597 * 120.00031 * 0.02562 * 6 5 4 8 8 C 1.50701 * 119.99996 * 179.97438 * 6 5 4 9 9 C 1.53005 * 109.47219 * 180.02562 * 8 6 5 10 10 H 1.09006 * 115.55762 * 29.31225 * 9 8 6 11 11 C 1.53069 * 117.51518 * 243.61113 * 9 8 6 12 12 C 1.52998 * 59.98494 * 252.52189 * 11 9 8 13 13 H 1.09000 * 117.49787 * 252.50138 * 12 11 9 14 14 C 1.52997 * 117.50113 * 107.49985 * 12 11 9 15 15 N 1.37287 * 107.28532 * 359.55874 * 4 3 2 16 16 H 0.97005 * 126.34507 * 180.23633 * 15 4 3 17 17 N 1.36329 * 125.55405 * 179.63272 * 2 1 3 18 18 C 1.46504 * 125.86296 * 0.06287 * 17 2 1 19 19 C 1.50700 * 109.47383 * 84.99537 * 18 17 2 20 20 H 1.07999 * 120.00017 * 0.02562 * 19 18 17 21 21 C 1.37871 * 119.99814 * 179.97438 * 19 18 17 22 22 N 1.31514 * 119.99735 * 180.02562 * 21 19 18 23 23 Si 1.86800 * 120.00431 * 0.02562 * 21 19 18 24 24 H 1.48505 * 109.46795 * 89.99774 * 23 21 19 25 25 H 1.48494 * 109.47505 * 209.99739 * 23 21 19 26 26 H 1.48502 * 109.46949 * 329.99989 * 23 21 19 27 27 H 1.08994 * 109.47192 * 270.36041 * 1 2 3 28 28 H 1.08997 * 109.47524 * 30.36941 * 1 2 3 29 29 H 1.09004 * 109.46722 * 150.36581 * 1 2 3 30 30 H 1.07997 * 125.88477 * 359.97438 * 3 2 1 31 31 H 1.08993 * 109.47035 * 60.00483 * 8 6 5 32 32 H 1.08997 * 109.47242 * 300.00094 * 8 6 5 33 33 H 1.08997 * 117.49589 * 145.03335 * 11 9 8 34 34 H 1.08997 * 117.52865 * 359.97438 * 11 9 8 35 35 H 1.09002 * 109.47153 * 111.25331 * 14 12 11 36 36 H 1.09001 * 109.46832 * 351.25522 * 14 12 11 37 37 H 1.09004 * 109.47261 * 231.25504 * 14 12 11 38 38 H 1.08997 * 109.46975 * 205.00000 * 18 17 2 39 39 H 1.09002 * 109.46861 * 324.99649 * 18 17 2 40 40 H 0.97008 * 119.99931 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2926 1.0995 0.0000 4 6 3.6386 0.6800 -0.0029 5 7 4.7124 1.4698 -0.0071 6 6 4.5658 2.7907 -0.0151 7 8 3.4521 3.2788 -0.0183 8 6 5.7798 3.6836 -0.0192 9 6 5.3360 5.1478 -0.0278 10 1 4.3786 5.3519 0.4518 11 6 5.7093 5.9928 -1.2484 12 6 6.4248 6.2167 0.0853 13 1 6.1839 7.1239 0.6396 14 6 7.8741 5.7397 0.1983 15 7 3.6380 -0.6929 0.0054 16 1 4.4191 -1.2681 0.0089 17 7 2.2998 -1.1091 0.0071 18 6 1.8329 -2.4977 0.0147 19 6 1.5566 -2.9426 -1.3984 20 1 1.7134 -2.2595 -2.2200 21 6 1.1045 -4.2221 -1.6423 22 7 0.8638 -4.6104 -2.8755 23 14 0.8338 -5.4039 -0.2213 24 1 -0.5603 -5.2723 0.2733 25 1 1.0655 -6.7958 -0.6840 26 1 1.7809 -5.0831 0.8766 27 1 -0.3633 0.0065 1.0276 28 1 -0.3634 0.8866 -0.5195 29 1 -0.3633 -0.8933 -0.5082 30 1 1.9487 2.1232 -0.0004 31 1 6.3778 3.4797 -0.9074 32 1 6.3761 3.4903 0.8725 33 1 4.9973 6.7523 -1.5714 34 1 6.2714 5.5059 -2.0453 35 1 8.5362 6.6026 0.2696 36 1 8.1338 5.1545 -0.6839 37 1 7.9849 5.1220 1.0896 38 1 2.5995 -3.1364 0.4534 39 1 0.9187 -2.5704 0.6038 40 1 0.5454 -5.5105 -3.0472 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355507084.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:31 Heat of formation + Delta-G solvation = 77.772088 kcal Electronic energy + Delta-G solvation = -20804.968042 eV Core-core repulsion = 17623.014903 eV Total energy + Delta-G solvation = -3181.953140 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.02361 -38.93389 -37.37920 -34.38038 -33.10643 -32.31677 -31.12416 -29.67831 -28.17343 -27.60367 -26.94683 -23.02628 -22.06728 -21.26618 -19.84013 -19.57794 -18.61419 -17.47554 -16.96457 -16.08355 -15.60249 -15.15882 -14.98414 -14.40356 -14.14092 -13.83089 -13.59654 -13.12518 -13.02402 -12.85631 -12.77166 -12.70938 -12.40438 -12.32801 -11.94660 -11.78636 -11.47635 -11.37878 -11.06029 -11.00989 -10.68502 -10.07259 -9.81404 -9.67259 -9.54487 -9.26476 -9.07961 -8.93323 -8.34059 -6.96933 -6.54914 -4.63747 1.56662 1.93198 2.91802 2.93505 2.98044 3.04698 3.83658 3.94214 4.11853 4.35517 4.67490 4.74472 4.81072 4.93027 5.01703 5.21281 5.32907 5.48190 5.60094 5.65297 5.75688 5.77078 5.77813 5.91549 5.94530 5.97165 5.99288 6.07431 6.09724 6.22957 6.25169 6.29754 6.53227 6.55743 6.68884 6.89613 7.38245 7.55840 7.82613 8.02088 8.32828 8.48830 8.97282 9.38089 10.56512 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.038769 B = 0.003186 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.049898 B = 8785.003902 C = 8990.358780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.193 3.807 3 C -0.330 4.330 4 C 0.474 3.526 5 N -0.704 5.704 6 C 0.495 3.505 7 O -0.585 6.585 8 C -0.081 4.081 9 C -0.130 4.130 10 H 0.114 0.886 11 C -0.177 4.177 12 C -0.162 4.162 13 H 0.099 0.901 14 C -0.122 4.122 15 N -0.466 5.466 16 H 0.446 0.554 17 N -0.339 5.339 18 C 0.227 3.773 19 C -0.564 4.564 20 H 0.085 0.915 21 C 0.085 3.915 22 N -0.875 5.875 23 Si 0.873 3.127 24 H -0.268 1.268 25 H -0.277 1.277 26 H -0.265 1.265 27 H 0.083 0.917 28 H 0.091 0.909 29 H 0.092 0.908 30 H 0.185 0.815 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.055 0.945 36 H 0.056 0.944 37 H 0.059 0.941 38 H 0.049 0.951 39 H 0.060 0.940 40 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.024 10.800 7.427 14.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.067 3.933 3 C -0.362 4.362 4 C 0.225 3.775 5 N -0.468 5.468 6 C 0.281 3.719 7 O -0.468 6.468 8 C -0.120 4.120 9 C -0.149 4.149 10 H 0.132 0.868 11 C -0.214 4.214 12 C -0.180 4.180 13 H 0.118 0.882 14 C -0.179 4.179 15 N -0.188 5.188 16 H 0.293 0.707 17 N -0.125 5.125 18 C 0.109 3.891 19 C -0.602 4.602 20 H 0.103 0.897 21 C -0.122 4.122 22 N -0.510 5.510 23 Si 0.698 3.302 24 H -0.193 1.193 25 H -0.202 1.202 26 H -0.190 1.190 27 H 0.102 0.898 28 H 0.109 0.891 29 H 0.111 0.889 30 H 0.202 0.798 31 H 0.102 0.898 32 H 0.105 0.895 33 H 0.108 0.892 34 H 0.110 0.890 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.067 0.933 39 H 0.077 0.923 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.206 10.239 7.297 13.608 hybrid contribution -0.248 -0.897 0.411 1.018 sum 4.959 9.342 7.709 13.087 Atomic orbital electron populations 1.20685 0.86275 1.05424 1.03562 1.21371 0.94528 0.85401 0.92046 1.22305 0.91189 1.00323 1.22342 1.19234 0.91822 0.82014 0.84437 1.68757 1.28067 1.05681 1.44256 1.20715 0.89323 0.86318 0.75551 1.90507 1.27500 1.79203 1.49553 1.20714 0.96776 0.91192 1.03353 1.22243 0.99316 0.91231 1.02098 0.86768 1.23133 1.03417 1.03431 0.91405 1.22390 0.93902 1.00483 1.01212 0.88245 1.21336 0.93798 1.00736 1.01995 1.44461 0.98546 1.05328 1.70473 0.70714 1.47370 0.93072 1.07509 1.64581 1.20326 0.95980 0.72508 1.00239 1.21216 1.48361 0.99904 0.90674 0.89654 1.24814 0.93996 0.97483 0.95899 1.69857 1.42599 1.19421 1.19140 0.86916 0.79603 0.81339 0.82328 1.19273 1.20228 1.18962 0.89814 0.89060 0.88883 0.79822 0.89801 0.89495 0.89202 0.89035 0.92637 0.92460 0.92165 0.93343 0.92276 0.91672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.38 9.92 36.01 0.36 -1.03 16 2 C 0.19 3.38 6.93 -81.70 -0.57 2.81 16 3 C -0.33 -6.32 9.41 -39.65 -0.37 -6.69 16 4 C 0.47 9.37 8.07 -155.18 -1.25 8.12 16 5 N -0.70 -14.06 10.51 -11.59 -0.12 -14.18 16 6 C 0.49 9.61 7.71 -11.81 -0.09 9.52 16 7 O -0.59 -12.46 12.47 5.28 0.07 -12.39 16 8 C -0.08 -1.22 5.14 -27.88 -0.14 -1.36 16 9 C -0.13 -1.80 5.42 -90.58 -0.49 -2.29 16 10 H 0.11 1.77 7.30 -51.93 -0.38 1.40 16 11 C -0.18 -2.13 9.83 -26.70 -0.26 -2.39 16 12 C -0.16 -1.78 6.40 -90.62 -0.58 -2.36 16 13 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 14 C -0.12 -1.16 9.19 37.16 0.34 -0.82 16 15 N -0.47 -8.41 7.37 31.32 0.23 -8.18 16 16 H 0.45 6.96 8.96 -182.55 -1.64 5.32 16 17 N -0.34 -6.31 3.63 -58.02 -0.21 -6.52 16 18 C 0.23 4.41 4.78 -5.19 -0.02 4.38 16 19 C -0.56 -13.56 9.94 -34.44 -0.34 -13.91 16 20 H 0.09 2.37 8.06 -52.49 -0.42 1.95 16 21 C 0.08 2.09 5.47 -17.82 -0.10 1.99 16 22 N -0.87 -23.70 13.96 55.43 0.77 -22.92 16 23 Si 0.87 17.72 27.47 -169.99 -4.67 13.05 16 24 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 25 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 26 H -0.26 -5.02 6.54 56.52 0.37 -4.65 16 27 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 29 H 0.09 1.37 7.80 -51.93 -0.40 0.97 16 30 H 0.18 3.66 5.77 -52.49 -0.30 3.36 16 31 H 0.08 1.20 7.88 -51.93 -0.41 0.79 16 32 H 0.09 1.20 7.77 -51.93 -0.40 0.80 16 33 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.09 1.06 7.94 -51.93 -0.41 0.65 16 35 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.06 0.55 7.90 -51.93 -0.41 0.14 16 37 H 0.06 0.56 7.84 -51.93 -0.41 0.16 16 38 H 0.05 0.91 7.20 -51.93 -0.37 0.53 16 39 H 0.06 1.05 7.30 -51.93 -0.38 0.67 16 40 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 LS Contribution 335.10 15.07 5.05 5.05 Total: -1.00 -29.74 335.10 -9.63 -39.37 By element: Atomic # 1 Polarization: 17.97 SS G_CDS: -7.22 Total: 10.75 kcal Atomic # 6 Polarization: -0.50 SS G_CDS: -3.52 Total: -4.03 kcal Atomic # 7 Polarization: -52.47 SS G_CDS: 0.67 Total: -51.80 kcal Atomic # 8 Polarization: -12.46 SS G_CDS: 0.07 Total: -12.39 kcal Atomic # 14 Polarization: 17.72 SS G_CDS: -4.67 Total: 13.05 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -29.74 -9.63 -39.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355507084.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.145 kcal (2) G-P(sol) polarization free energy of solvation -29.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.373 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds