Wall clock time and date at job start Mon Mar 30 2020 01:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35128 * 125.54519 * 2 1 4 4 C 1.40985 * 108.23500 * 180.12593 * 3 2 1 5 5 N 1.33303 * 126.35497 * 179.82762 * 4 3 2 6 6 C 1.32904 * 120.00133 * 359.68443 * 5 4 3 7 7 O 1.21597 * 120.00031 * 0.02562 * 6 5 4 8 8 C 1.50701 * 119.99996 * 179.97438 * 6 5 4 9 9 C 1.53005 * 109.47219 * 180.02562 * 8 6 5 10 10 H 1.09006 * 115.55762 * 29.31225 * 9 8 6 11 11 C 1.53069 * 117.51518 * 243.61113 * 9 8 6 12 12 C 1.52998 * 59.98494 * 252.52189 * 11 9 8 13 13 H 1.09000 * 117.49787 * 252.50138 * 12 11 9 14 14 C 1.52997 * 117.50113 * 107.49985 * 12 11 9 15 15 N 1.37287 * 107.28532 * 359.55874 * 4 3 2 16 16 H 0.97005 * 126.34507 * 180.23633 * 15 4 3 17 17 N 1.36329 * 125.55405 * 179.63272 * 2 1 3 18 18 C 1.46504 * 125.86296 * 0.06287 * 17 2 1 19 19 C 1.50700 * 109.47383 * 84.99537 * 18 17 2 20 20 H 1.07999 * 120.00017 * 0.02562 * 19 18 17 21 21 C 1.37871 * 119.99814 * 179.97438 * 19 18 17 22 22 N 1.31514 * 119.99735 * 180.02562 * 21 19 18 23 23 Si 1.86800 * 120.00431 * 0.02562 * 21 19 18 24 24 H 1.48505 * 109.46795 * 89.99774 * 23 21 19 25 25 H 1.48494 * 109.47505 * 209.99739 * 23 21 19 26 26 H 1.48502 * 109.46949 * 329.99989 * 23 21 19 27 27 H 1.08994 * 109.47192 * 270.36041 * 1 2 3 28 28 H 1.08997 * 109.47524 * 30.36941 * 1 2 3 29 29 H 1.09004 * 109.46722 * 150.36581 * 1 2 3 30 30 H 1.07997 * 125.88477 * 359.97438 * 3 2 1 31 31 H 1.08993 * 109.47035 * 60.00483 * 8 6 5 32 32 H 1.08997 * 109.47242 * 300.00094 * 8 6 5 33 33 H 1.08997 * 117.49589 * 145.03335 * 11 9 8 34 34 H 1.08997 * 117.52865 * 359.97438 * 11 9 8 35 35 H 1.09002 * 109.47153 * 111.25331 * 14 12 11 36 36 H 1.09001 * 109.46832 * 351.25522 * 14 12 11 37 37 H 1.09004 * 109.47261 * 231.25504 * 14 12 11 38 38 H 1.08997 * 109.46975 * 205.00000 * 18 17 2 39 39 H 1.09002 * 109.46861 * 324.99649 * 18 17 2 40 40 H 0.97008 * 119.99931 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2926 1.0995 0.0000 4 6 3.6386 0.6800 -0.0029 5 7 4.7124 1.4698 -0.0071 6 6 4.5658 2.7907 -0.0151 7 8 3.4521 3.2788 -0.0183 8 6 5.7798 3.6836 -0.0192 9 6 5.3360 5.1478 -0.0278 10 1 4.3786 5.3519 0.4518 11 6 5.7093 5.9928 -1.2484 12 6 6.4248 6.2167 0.0853 13 1 6.1839 7.1239 0.6396 14 6 7.8741 5.7397 0.1983 15 7 3.6380 -0.6929 0.0054 16 1 4.4191 -1.2681 0.0089 17 7 2.2998 -1.1091 0.0071 18 6 1.8329 -2.4977 0.0147 19 6 1.5566 -2.9426 -1.3984 20 1 1.7134 -2.2595 -2.2200 21 6 1.1045 -4.2221 -1.6423 22 7 0.8638 -4.6104 -2.8755 23 14 0.8338 -5.4039 -0.2213 24 1 -0.5603 -5.2723 0.2733 25 1 1.0655 -6.7958 -0.6840 26 1 1.7809 -5.0831 0.8766 27 1 -0.3633 0.0065 1.0276 28 1 -0.3634 0.8866 -0.5195 29 1 -0.3633 -0.8933 -0.5082 30 1 1.9487 2.1232 -0.0004 31 1 6.3778 3.4797 -0.9074 32 1 6.3761 3.4903 0.8725 33 1 4.9973 6.7523 -1.5714 34 1 6.2714 5.5059 -2.0453 35 1 8.5362 6.6026 0.2696 36 1 8.1338 5.1545 -0.6839 37 1 7.9849 5.1220 1.0896 38 1 2.5995 -3.1364 0.4534 39 1 0.9187 -2.5704 0.6038 40 1 0.5454 -5.5105 -3.0472 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355507084.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:31 Heat of formation + Delta-G solvation = 59.427936 kcal Electronic energy + Delta-G solvation = -20805.763504 eV Core-core repulsion = 17623.014903 eV Total energy + Delta-G solvation = -3182.748602 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.49437 -40.28198 -38.51323 -35.99766 -34.77558 -33.75879 -32.74044 -30.88492 -29.17162 -28.89071 -28.46271 -24.66917 -23.50195 -22.31382 -21.21479 -20.86233 -19.83311 -19.30717 -18.49468 -17.36278 -16.97087 -16.67312 -16.50844 -15.84374 -15.57825 -15.10288 -14.71473 -14.62898 -14.35597 -14.22291 -13.90633 -13.87433 -13.76251 -13.50384 -13.25232 -12.98650 -12.78065 -12.60788 -12.36070 -12.24097 -12.02367 -11.86535 -11.14744 -10.93570 -10.86943 -10.74407 -10.54997 -10.36649 -9.88651 -8.51786 -8.42827 -6.58501 0.08723 0.49073 1.37545 1.38895 1.44454 1.47597 2.24090 2.63732 2.82349 2.90479 2.94820 3.48557 3.63105 3.86435 4.03690 4.09971 4.16910 4.21836 4.44960 4.47695 4.51341 4.71652 4.73843 4.75147 4.87031 4.89672 4.94766 4.99288 5.03387 5.04112 5.11998 5.16784 5.24766 5.30196 5.39901 5.51289 5.87357 6.00179 6.10936 6.45877 6.54526 6.84603 7.07710 7.86869 8.72089 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.038769 B = 0.003186 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.049898 B = 8785.003902 C = 8990.358780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.201 3.799 3 C -0.348 4.348 4 C 0.456 3.544 5 N -0.714 5.714 6 C 0.479 3.521 7 O -0.611 6.611 8 C -0.070 4.070 9 C -0.155 4.155 10 H 0.091 0.909 11 C -0.179 4.179 12 C -0.139 4.139 13 H 0.112 0.888 14 C -0.123 4.123 15 N -0.462 5.462 16 H 0.454 0.546 17 N -0.345 5.345 18 C 0.232 3.768 19 C -0.564 4.564 20 H 0.031 0.969 21 C 0.027 3.973 22 N -0.934 5.934 23 Si 0.947 3.053 24 H -0.253 1.253 25 H -0.287 1.287 26 H -0.235 1.235 27 H 0.119 0.881 28 H 0.106 0.894 29 H 0.083 0.917 30 H 0.175 0.825 31 H 0.091 0.909 32 H 0.099 0.901 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.073 0.927 36 H 0.056 0.944 37 H 0.062 0.938 38 H 0.067 0.933 39 H 0.091 0.909 40 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.366 10.797 9.646 15.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.074 3.926 3 C -0.379 4.379 4 C 0.207 3.793 5 N -0.479 5.479 6 C 0.266 3.734 7 O -0.496 6.496 8 C -0.109 4.109 9 C -0.173 4.173 10 H 0.109 0.891 11 C -0.215 4.215 12 C -0.157 4.157 13 H 0.130 0.870 14 C -0.180 4.180 15 N -0.185 5.185 16 H 0.303 0.697 17 N -0.131 5.131 18 C 0.114 3.886 19 C -0.602 4.602 20 H 0.050 0.950 21 C -0.174 4.174 22 N -0.571 5.571 23 Si 0.768 3.232 24 H -0.177 1.177 25 H -0.213 1.213 26 H -0.158 1.158 27 H 0.137 0.863 28 H 0.124 0.876 29 H 0.102 0.898 30 H 0.192 0.808 31 H 0.110 0.890 32 H 0.117 0.883 33 H 0.113 0.887 34 H 0.114 0.886 35 H 0.092 0.908 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.085 0.915 39 H 0.109 0.891 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.574 10.254 9.532 15.069 hybrid contribution -0.364 -0.832 -0.370 0.981 sum 5.209 9.423 9.162 14.137 Atomic orbital electron populations 1.20874 0.83400 1.05636 1.05838 1.21941 0.96137 0.84479 0.90000 1.22224 0.91455 1.00426 1.23804 1.19491 0.92316 0.82654 0.84815 1.68858 1.28284 1.06083 1.44645 1.21530 0.90410 0.86574 0.74844 1.90485 1.28815 1.79528 1.50759 1.20673 0.94983 0.91067 1.04177 1.22102 0.99744 0.91253 1.04245 0.89083 1.23224 1.03709 1.02986 0.91621 1.22511 0.93911 0.99356 0.99900 0.86951 1.21389 0.92881 1.01603 1.02122 1.44478 0.98857 1.04985 1.70226 0.69674 1.47418 0.93385 1.07639 1.64619 1.20276 0.97809 0.72945 0.97535 1.21317 1.47872 0.99176 0.91817 0.95023 1.25795 0.93401 0.99495 0.98750 1.70031 1.44719 1.20139 1.22221 0.85746 0.80810 0.77627 0.79035 1.17715 1.21269 1.15766 0.86331 0.87563 0.89835 0.80822 0.89040 0.88276 0.88729 0.88635 0.90755 0.92509 0.91877 0.91467 0.89116 0.91681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.52 9.92 71.24 0.71 -1.82 16 2 C 0.20 6.86 6.93 41.14 0.29 7.14 16 3 C -0.35 -13.42 9.41 22.23 0.21 -13.21 16 4 C 0.46 18.19 8.07 133.83 1.08 19.27 16 5 N -0.71 -28.88 10.51 -309.87 -3.26 -32.14 16 6 C 0.48 18.92 7.71 87.95 0.68 19.60 16 7 O -0.61 -26.83 12.47 -4.02 -0.05 -26.88 16 8 C -0.07 -2.08 5.14 29.85 0.15 -1.93 16 9 C -0.15 -4.24 5.42 -10.77 -0.06 -4.30 16 10 H 0.09 2.92 7.30 -2.38 -0.02 2.90 16 11 C -0.18 -4.12 9.83 30.62 0.30 -3.82 16 12 C -0.14 -2.81 6.40 -10.80 -0.07 -2.88 16 13 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 14 C -0.12 -2.05 9.19 71.98 0.66 -1.39 16 15 N -0.46 -16.50 7.37 -54.81 -0.40 -16.90 16 16 H 0.45 13.95 8.96 -213.28 -1.91 12.03 16 17 N -0.34 -12.42 3.63 -337.49 -1.23 -13.64 16 18 C 0.23 8.47 4.78 85.63 0.41 8.88 16 19 C -0.56 -27.18 9.94 25.60 0.25 -26.93 16 20 H 0.03 1.83 8.06 -2.91 -0.02 1.80 16 21 C 0.03 1.31 5.47 84.65 0.46 1.77 16 22 N -0.93 -51.84 13.96 21.44 0.30 -51.55 16 23 Si 0.95 34.92 27.47 68.60 1.88 36.81 16 24 H -0.25 -8.74 7.11 99.48 0.71 -8.03 16 25 H -0.29 -11.02 7.11 99.48 0.71 -10.31 16 26 H -0.23 -7.47 6.54 99.48 0.65 -6.82 16 27 H 0.12 2.22 8.14 -2.39 -0.02 2.20 16 28 H 0.11 2.38 8.14 -2.39 -0.02 2.36 16 29 H 0.08 2.32 7.80 -2.38 -0.02 2.30 16 30 H 0.17 7.10 5.77 -2.91 -0.02 7.08 16 31 H 0.09 2.56 7.88 -2.39 -0.02 2.55 16 32 H 0.10 2.67 7.77 -2.39 -0.02 2.65 16 33 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.10 2.11 7.94 -2.39 -0.02 2.09 16 35 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.06 0.96 7.90 -2.39 -0.02 0.94 16 37 H 0.06 1.04 7.84 -2.38 -0.02 1.02 16 38 H 0.07 2.26 7.20 -2.39 -0.02 2.24 16 39 H 0.09 2.84 7.30 -2.39 -0.02 2.82 16 40 H 0.27 14.14 8.31 -92.70 -0.77 13.37 16 Total: -1.00 -67.11 335.10 1.40 -65.71 By element: Atomic # 1 Polarization: 39.11 SS G_CDS: -0.92 Total: 38.19 kcal Atomic # 6 Polarization: -4.67 SS G_CDS: 5.07 Total: 0.40 kcal Atomic # 7 Polarization: -109.64 SS G_CDS: -4.59 Total: -114.23 kcal Atomic # 8 Polarization: -26.83 SS G_CDS: -0.05 Total: -26.88 kcal Atomic # 14 Polarization: 34.92 SS G_CDS: 1.88 Total: 36.81 kcal Total: -67.11 1.40 -65.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355507084.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.133 kcal (2) G-P(sol) polarization free energy of solvation -67.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds