Wall clock time and date at job start Mon Mar 30 2020 02:19:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30835 * 125.89790 * 2 1 4 4 N 1.40087 * 108.20240 * 179.97438 * 3 2 1 5 5 H 0.97004 * 126.03199 * 179.97438 * 4 3 2 6 6 C 1.34945 * 107.92738 * 359.75962 * 4 3 2 7 7 C 1.50704 * 126.12477 * 180.23825 * 6 4 3 8 8 C 1.35313 * 107.74599 * 0.38993 * 6 4 3 9 9 C 1.50696 * 126.03824 * 179.87440 * 8 6 4 10 10 C 1.50702 * 109.47036 * 269.71138 * 9 8 6 11 11 O 1.21273 * 120.00113 * 0.02562 * 10 9 8 12 12 N 1.34782 * 119.99710 * 180.02562 * 10 9 8 13 13 C 1.46499 * 119.99602 * 180.02562 * 12 10 9 14 14 C 1.53006 * 109.46602 * 184.79227 * 13 12 10 15 15 C 1.50694 * 115.55031 * 294.81113 * 14 13 12 16 16 H 1.08008 * 119.99906 * 95.20931 * 15 14 13 17 17 C 1.37882 * 120.00284 * 274.93190 * 15 14 13 18 18 N 1.31509 * 119.99919 * 355.42076 * 17 15 14 19 19 Si 1.86800 * 120.00242 * 175.41794 * 17 15 14 20 20 H 1.48502 * 109.47002 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.47091 * 119.99801 * 19 17 15 22 22 H 1.48497 * 109.47138 * 240.00628 * 19 17 15 23 23 C 1.53003 * 117.49932 * 80.48439 * 14 13 12 24 24 C 1.52998 * 117.49502 * 149.14583 * 14 13 12 25 25 H 1.09002 * 109.46454 * 270.02093 * 1 2 3 26 26 H 1.08989 * 109.47236 * 30.02103 * 1 2 3 27 27 H 1.08999 * 109.46775 * 150.02500 * 1 2 3 28 28 H 1.08999 * 109.46762 * 270.17582 * 7 6 4 29 29 H 1.09000 * 109.47436 * 30.17933 * 7 6 4 30 30 H 1.09003 * 109.46608 * 150.17634 * 7 6 4 31 31 H 1.09003 * 109.46948 * 149.71362 * 9 8 6 32 32 H 1.08998 * 109.47692 * 29.71615 * 9 8 6 33 33 H 0.97004 * 119.99767 * 359.97438 * 12 10 9 34 34 H 1.08993 * 109.47604 * 64.79661 * 13 12 10 35 35 H 1.09000 * 109.47101 * 304.78675 * 13 12 10 36 36 H 0.97004 * 120.00506 * 184.99920 * 18 17 15 37 37 H 1.08997 * 117.49622 * 214.99831 * 23 14 13 38 38 H 1.09000 * 117.49928 * 0.02562 * 23 14 13 39 39 H 1.08996 * 117.50254 * 359.97148 * 24 14 13 40 40 H 1.09005 * 117.49689 * 144.97447 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6087 0.6340 0.0006 5 1 4.3908 1.2079 0.0004 6 6 3.6142 -0.7154 0.0063 7 6 4.8351 -1.5989 0.0140 8 6 2.3272 -1.1331 0.0005 9 6 1.8600 -2.5658 0.0012 10 6 1.7049 -3.0442 -1.4195 11 8 1.9500 -2.2956 -2.3416 12 7 1.2937 -4.3040 -1.6651 13 6 1.1435 -4.7692 -3.0462 14 6 0.5553 -6.1817 -3.0472 15 6 1.4288 -7.2499 -2.4416 16 1 1.2985 -7.5318 -1.4071 17 6 2.3905 -7.8716 -3.2095 18 7 2.4861 -7.5977 -4.4922 19 14 3.5579 -9.1028 -2.4280 20 1 3.2443 -9.2335 -0.9824 21 1 3.4003 -10.4231 -3.0895 22 1 4.9565 -8.6312 -2.5909 23 6 -0.9574 -6.3173 -2.8624 24 6 -0.3269 -6.5786 -4.2326 25 1 -0.3632 0.0004 1.0277 26 1 -0.3633 0.8897 -0.5141 27 1 -0.3633 -0.8902 -0.5135 28 1 5.1346 -1.8137 -1.0118 29 1 5.6486 -1.0901 0.5311 30 1 4.6050 -2.5320 0.5284 31 1 0.9010 -2.6350 0.5146 32 1 2.5932 -3.1869 0.5157 33 1 1.0980 -4.9028 -0.9275 34 1 2.1182 -4.7812 -3.5336 35 1 0.4757 -4.0973 -3.5853 36 1 3.1132 -8.0870 -5.0474 37 1 -1.3208 -7.1791 -2.3027 38 1 -1.5337 -5.4001 -2.7404 39 1 -0.4887 -5.8334 -5.0113 40 1 -0.2753 -7.6124 -4.5745 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357668007.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:46 Heat of formation + Delta-G solvation = 42.469106 kcal Electronic energy + Delta-G solvation = -21420.617316 eV Core-core repulsion = 18237.133324 eV Total energy + Delta-G solvation = -3183.483992 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.30806 -38.81961 -36.63669 -33.37941 -33.18258 -32.79075 -31.96069 -29.29049 -27.63729 -26.71842 -25.67453 -24.64938 -21.17679 -20.30661 -19.92038 -19.46616 -18.85140 -17.26344 -16.61117 -16.02101 -14.99970 -14.92114 -14.82006 -14.55108 -13.88242 -13.65559 -13.39396 -13.28623 -13.04315 -12.83426 -12.50727 -12.36896 -12.24104 -12.11567 -11.80623 -11.57249 -11.33984 -11.01934 -10.93601 -10.52790 -10.42757 -10.22908 -9.57441 -9.26610 -9.13177 -9.02637 -8.49737 -8.32433 -8.16284 -8.03536 -6.08170 -4.17856 1.93844 2.76591 2.91304 3.23214 3.31975 3.32528 3.34113 4.09122 4.34252 4.67415 4.73001 5.02227 5.19633 5.23021 5.31055 5.34824 5.43190 5.49715 5.63137 5.69486 5.76191 5.84474 5.97761 6.05157 6.07396 6.26200 6.35740 6.49840 6.59503 6.71828 6.75207 6.91627 7.13217 7.34678 7.35316 7.41663 7.54729 7.77687 7.80579 8.33936 8.38903 8.83739 8.99244 9.49225 10.99060 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021222 B = 0.004523 C = 0.003985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.046654 B = 6188.608942 C = 7025.328000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.094 3.906 3 N -0.303 5.303 4 N -0.479 5.479 5 H 0.435 0.565 6 C 0.100 3.900 7 C -0.095 4.095 8 C -0.209 4.209 9 C -0.063 4.063 10 C 0.502 3.498 11 O -0.550 6.550 12 N -0.707 5.707 13 C 0.165 3.835 14 C 0.023 3.977 15 C -0.498 4.498 16 H 0.061 0.939 17 C 0.073 3.927 18 N -0.875 5.875 19 Si 0.889 3.111 20 H -0.272 1.272 21 H -0.285 1.285 22 H -0.284 1.284 23 C -0.210 4.210 24 C -0.143 4.143 25 H 0.075 0.925 26 H 0.071 0.929 27 H 0.078 0.922 28 H 0.084 0.916 29 H 0.068 0.932 30 H 0.086 0.914 31 H 0.096 0.904 32 H 0.094 0.906 33 H 0.400 0.600 34 H 0.065 0.935 35 H 0.038 0.962 36 H 0.261 0.739 37 H 0.077 0.923 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.505 10.172 10.705 14.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.073 4.073 3 N -0.126 5.126 4 N -0.187 5.187 5 H 0.278 0.722 6 C -0.028 4.028 7 C -0.153 4.153 8 C -0.221 4.221 9 C -0.105 4.105 10 C 0.287 3.713 11 O -0.428 6.428 12 N -0.357 5.357 13 C 0.042 3.958 14 C 0.023 3.977 15 C -0.536 4.536 16 H 0.079 0.921 17 C -0.131 4.131 18 N -0.511 5.511 19 Si 0.717 3.283 20 H -0.197 1.197 21 H -0.211 1.211 22 H -0.210 1.210 23 C -0.248 4.248 24 C -0.182 4.182 25 H 0.094 0.906 26 H 0.090 0.910 27 H 0.097 0.903 28 H 0.103 0.897 29 H 0.087 0.913 30 H 0.105 0.895 31 H 0.114 0.886 32 H 0.113 0.887 33 H 0.234 0.766 34 H 0.083 0.917 35 H 0.056 0.944 36 H 0.070 0.930 37 H 0.096 0.904 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 0.851 11.959 9.857 15.521 hybrid contribution 1.080 -1.629 0.471 2.010 sum 1.930 10.330 10.327 14.734 Atomic orbital electron populations 1.20181 0.86946 1.03589 1.02569 1.22122 0.96789 0.90168 0.98186 1.77205 0.86466 1.22326 1.26616 1.46011 1.07187 1.04722 1.60822 0.72177 1.20789 0.96901 0.84861 1.00262 1.20491 0.92660 0.98278 1.03895 1.19065 0.91263 0.94910 1.16835 1.19935 1.03123 0.92163 0.95233 1.20562 0.77582 0.82111 0.91023 1.90655 1.50658 1.55220 1.46288 1.46011 1.66947 1.12339 1.10371 1.20938 1.00434 0.93877 0.80578 1.19067 0.87244 0.92252 0.99164 1.20389 1.16261 1.19761 0.97143 0.92124 1.24992 0.96835 0.96432 0.94859 1.70001 1.36304 1.40180 1.04618 0.86589 0.81118 0.80976 0.79617 1.19672 1.21070 1.20993 1.23010 0.98749 1.00637 1.02358 1.22463 1.04715 1.01078 0.89903 0.90598 0.90966 0.90349 0.89737 0.91311 0.89484 0.88620 0.88729 0.76618 0.91714 0.94388 0.92952 0.90427 0.91723 0.91892 0.89580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.87 10.12 36.01 0.36 -0.51 16 2 C 0.09 1.39 7.22 -82.40 -0.59 0.80 16 3 N -0.30 -4.60 12.70 33.67 0.43 -4.17 16 4 N -0.48 -6.12 7.36 33.48 0.25 -5.88 16 5 H 0.43 4.01 8.96 -182.60 -1.64 2.37 16 6 C 0.10 1.32 7.21 -82.26 -0.59 0.73 16 7 C -0.09 -0.97 10.22 36.01 0.37 -0.60 16 8 C -0.21 -3.05 4.59 -105.05 -0.48 -3.53 16 9 C -0.06 -0.85 5.64 -29.04 -0.16 -1.01 16 10 C 0.50 9.02 7.82 -10.98 -0.09 8.93 16 11 O -0.55 -12.18 16.03 5.56 0.09 -12.09 16 12 N -0.71 -13.15 5.48 -60.29 -0.33 -13.48 16 13 C 0.16 3.68 5.50 -4.04 -0.02 3.66 16 14 C 0.02 0.54 1.47 -155.66 -0.23 0.31 16 15 C -0.50 -12.50 8.59 -34.44 -0.30 -12.80 16 16 H 0.06 1.49 7.82 -52.48 -0.41 1.08 16 17 C 0.07 1.89 5.43 -17.82 -0.10 1.80 16 18 N -0.87 -23.99 12.65 55.43 0.70 -23.29 16 19 Si 0.89 20.11 29.54 -169.99 -5.02 15.09 16 20 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 23 C -0.21 -4.31 9.96 -26.69 -0.27 -4.58 16 24 C -0.14 -3.27 9.14 -26.69 -0.24 -3.51 16 25 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.08 0.93 7.92 -51.93 -0.41 0.52 16 28 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.09 0.82 7.14 -51.93 -0.37 0.45 16 31 H 0.10 1.05 7.92 -51.93 -0.41 0.64 16 32 H 0.09 1.07 7.14 -51.93 -0.37 0.70 16 33 H 0.40 6.69 8.33 -40.82 -0.34 6.35 16 34 H 0.06 1.66 8.14 -51.93 -0.42 1.24 16 35 H 0.04 0.85 8.09 -51.93 -0.42 0.43 16 36 H 0.26 6.87 8.32 -40.82 -0.34 6.53 16 37 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 38 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 39 H 0.06 1.38 8.14 -51.93 -0.42 0.95 16 40 H 0.09 2.10 8.14 -51.93 -0.42 1.68 16 LS Contribution 342.91 15.07 5.17 5.17 Total: -1.00 -32.18 342.91 -8.37 -40.55 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: -7.31 Total: 8.41 kcal Atomic # 6 Polarization: -7.96 SS G_CDS: -2.34 Total: -10.30 kcal Atomic # 7 Polarization: -47.87 SS G_CDS: 1.04 Total: -46.83 kcal Atomic # 8 Polarization: -12.18 SS G_CDS: 0.09 Total: -12.09 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.09 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.18 -8.37 -40.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357668007.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.019 kcal (2) G-P(sol) polarization free energy of solvation -32.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.550 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds