Wall clock time and date at job start Mon Mar 30 2020 02:19:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30835 * 125.89790 * 2 1 4 4 N 1.40087 * 108.20240 * 179.97438 * 3 2 1 5 5 H 0.97004 * 126.03199 * 179.97438 * 4 3 2 6 6 C 1.34945 * 107.92738 * 359.75962 * 4 3 2 7 7 C 1.50704 * 126.12477 * 180.23825 * 6 4 3 8 8 C 1.35313 * 107.74599 * 0.38993 * 6 4 3 9 9 C 1.50696 * 126.03824 * 179.87440 * 8 6 4 10 10 C 1.50702 * 109.47036 * 269.71138 * 9 8 6 11 11 O 1.21273 * 120.00113 * 0.02562 * 10 9 8 12 12 N 1.34782 * 119.99710 * 180.02562 * 10 9 8 13 13 C 1.46499 * 119.99602 * 180.02562 * 12 10 9 14 14 C 1.53006 * 109.46602 * 184.79227 * 13 12 10 15 15 C 1.50694 * 115.55031 * 294.81113 * 14 13 12 16 16 H 1.08008 * 119.99906 * 95.20931 * 15 14 13 17 17 C 1.37882 * 120.00284 * 274.93190 * 15 14 13 18 18 N 1.31509 * 119.99919 * 355.42076 * 17 15 14 19 19 Si 1.86800 * 120.00242 * 175.41794 * 17 15 14 20 20 H 1.48502 * 109.47002 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.47091 * 119.99801 * 19 17 15 22 22 H 1.48497 * 109.47138 * 240.00628 * 19 17 15 23 23 C 1.53003 * 117.49932 * 80.48439 * 14 13 12 24 24 C 1.52998 * 117.49502 * 149.14583 * 14 13 12 25 25 H 1.09002 * 109.46454 * 270.02093 * 1 2 3 26 26 H 1.08989 * 109.47236 * 30.02103 * 1 2 3 27 27 H 1.08999 * 109.46775 * 150.02500 * 1 2 3 28 28 H 1.08999 * 109.46762 * 270.17582 * 7 6 4 29 29 H 1.09000 * 109.47436 * 30.17933 * 7 6 4 30 30 H 1.09003 * 109.46608 * 150.17634 * 7 6 4 31 31 H 1.09003 * 109.46948 * 149.71362 * 9 8 6 32 32 H 1.08998 * 109.47692 * 29.71615 * 9 8 6 33 33 H 0.97004 * 119.99767 * 359.97438 * 12 10 9 34 34 H 1.08993 * 109.47604 * 64.79661 * 13 12 10 35 35 H 1.09000 * 109.47101 * 304.78675 * 13 12 10 36 36 H 0.97004 * 120.00506 * 184.99920 * 18 17 15 37 37 H 1.08997 * 117.49622 * 214.99831 * 23 14 13 38 38 H 1.09000 * 117.49928 * 0.02562 * 23 14 13 39 39 H 1.08996 * 117.50254 * 359.97148 * 24 14 13 40 40 H 1.09005 * 117.49689 * 144.97447 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6087 0.6340 0.0006 5 1 4.3908 1.2079 0.0004 6 6 3.6142 -0.7154 0.0063 7 6 4.8351 -1.5989 0.0140 8 6 2.3272 -1.1331 0.0005 9 6 1.8600 -2.5658 0.0012 10 6 1.7049 -3.0442 -1.4195 11 8 1.9500 -2.2956 -2.3416 12 7 1.2937 -4.3040 -1.6651 13 6 1.1435 -4.7692 -3.0462 14 6 0.5553 -6.1817 -3.0472 15 6 1.4288 -7.2499 -2.4416 16 1 1.2985 -7.5318 -1.4071 17 6 2.3905 -7.8716 -3.2095 18 7 2.4861 -7.5977 -4.4922 19 14 3.5579 -9.1028 -2.4280 20 1 3.2443 -9.2335 -0.9824 21 1 3.4003 -10.4231 -3.0895 22 1 4.9565 -8.6312 -2.5909 23 6 -0.9574 -6.3173 -2.8624 24 6 -0.3269 -6.5786 -4.2326 25 1 -0.3632 0.0004 1.0277 26 1 -0.3633 0.8897 -0.5141 27 1 -0.3633 -0.8902 -0.5135 28 1 5.1346 -1.8137 -1.0118 29 1 5.6486 -1.0901 0.5311 30 1 4.6050 -2.5320 0.5284 31 1 0.9010 -2.6350 0.5146 32 1 2.5932 -3.1869 0.5157 33 1 1.0980 -4.9028 -0.9275 34 1 2.1182 -4.7812 -3.5336 35 1 0.4757 -4.0973 -3.5853 36 1 3.1132 -8.0870 -5.0474 37 1 -1.3208 -7.1791 -2.3027 38 1 -1.5337 -5.4001 -2.7404 39 1 -0.4887 -5.8334 -5.0113 40 1 -0.2753 -7.6124 -4.5745 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357668007.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:45 Heat of formation + Delta-G solvation = 21.077066 kcal Electronic energy + Delta-G solvation = -21421.544944 eV Core-core repulsion = 18237.133324 eV Total energy + Delta-G solvation = -3184.411620 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.33196 -40.33296 -38.38814 -34.80769 -34.35736 -33.94322 -33.81342 -30.31990 -28.69429 -28.09112 -27.35426 -26.12821 -22.91717 -21.57137 -21.24737 -21.00858 -20.10052 -18.42023 -18.07898 -17.64348 -16.65042 -16.46407 -16.18115 -15.96379 -15.37539 -14.90190 -14.65734 -14.37352 -14.12974 -14.10099 -13.93467 -13.62946 -13.41674 -13.22248 -13.12494 -12.89664 -12.84801 -12.78055 -12.50787 -12.27762 -11.98854 -11.46303 -11.35817 -10.89704 -10.81857 -10.40677 -10.15364 -9.99757 -9.73291 -9.29138 -8.05366 -6.19500 0.92224 1.44548 1.48490 1.57666 1.68349 1.90934 2.00515 2.45594 2.66568 3.23157 3.56673 3.74083 3.77418 4.12158 4.21994 4.29106 4.34127 4.50095 4.58762 4.60751 4.67154 4.70932 4.78696 4.82092 4.82898 5.00084 5.04465 5.08033 5.10203 5.13865 5.29411 5.32383 5.60985 5.67281 5.76210 5.78706 5.83434 6.41230 6.46708 6.76195 6.87943 6.95301 7.50350 7.56553 9.01932 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021222 B = 0.004523 C = 0.003985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.046654 B = 6188.608942 C = 7025.328000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.079 3.921 3 N -0.333 5.333 4 N -0.475 5.475 5 H 0.447 0.553 6 C 0.100 3.900 7 C -0.094 4.094 8 C -0.238 4.238 9 C -0.051 4.051 10 C 0.503 3.497 11 O -0.595 6.595 12 N -0.701 5.701 13 C 0.182 3.818 14 C 0.003 3.997 15 C -0.499 4.499 16 H 0.068 0.932 17 C 0.022 3.978 18 N -0.911 5.911 19 Si 0.950 3.050 20 H -0.257 1.257 21 H -0.288 1.288 22 H -0.289 1.289 23 C -0.175 4.175 24 C -0.158 4.158 25 H 0.101 0.899 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.125 0.875 32 H 0.121 0.879 33 H 0.412 0.588 34 H 0.021 0.979 35 H 0.031 0.969 36 H 0.257 0.743 37 H 0.086 0.914 38 H 0.088 0.912 39 H 0.065 0.935 40 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.377 9.980 13.229 16.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.087 4.087 3 N -0.158 5.158 4 N -0.184 5.184 5 H 0.293 0.707 6 C -0.029 4.029 7 C -0.152 4.152 8 C -0.250 4.250 9 C -0.091 4.091 10 C 0.291 3.709 11 O -0.477 6.477 12 N -0.351 5.351 13 C 0.058 3.942 14 C 0.003 3.997 15 C -0.537 4.537 16 H 0.086 0.914 17 C -0.178 4.178 18 N -0.549 5.549 19 Si 0.776 3.224 20 H -0.181 1.181 21 H -0.214 1.214 22 H -0.215 1.215 23 C -0.212 4.212 24 C -0.197 4.197 25 H 0.119 0.881 26 H 0.089 0.911 27 H 0.094 0.906 28 H 0.089 0.911 29 H 0.117 0.883 30 H 0.117 0.883 31 H 0.143 0.857 32 H 0.139 0.861 33 H 0.248 0.752 34 H 0.040 0.960 35 H 0.050 0.950 36 H 0.066 0.934 37 H 0.105 0.895 38 H 0.106 0.894 39 H 0.083 0.917 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.714 11.768 12.428 17.131 hybrid contribution 1.126 -1.515 -0.335 1.917 sum 1.840 10.253 12.093 15.961 Atomic orbital electron populations 1.20266 0.85410 1.03376 1.04144 1.22627 0.98105 0.90251 0.97718 1.77141 0.87528 1.23168 1.27916 1.46079 1.07129 1.05040 1.60165 0.70668 1.21292 0.97712 0.85213 0.98718 1.20593 0.92429 0.98603 1.03599 1.19346 0.91918 0.95378 1.18309 1.19937 1.05506 0.91815 0.91851 1.21410 0.75785 0.81064 0.92645 1.90638 1.52424 1.56299 1.48305 1.45886 1.67149 1.13019 1.09085 1.20462 0.97764 0.93592 0.82423 1.19113 0.88759 0.92102 0.99776 1.20715 1.16029 1.19555 0.97369 0.91407 1.25723 0.98432 0.98432 0.95199 1.70136 1.37287 1.41516 1.05964 0.85635 0.78740 0.78551 0.79478 1.18057 1.21399 1.21536 1.22994 0.96705 1.01782 0.99697 1.22379 1.06391 0.99852 0.91048 0.88065 0.91050 0.90625 0.91053 0.88328 0.88343 0.85713 0.86095 0.75218 0.96011 0.95034 0.93370 0.89541 0.89388 0.91675 0.91836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.61 10.12 71.24 0.72 -0.89 16 2 C 0.08 2.25 7.22 43.10 0.31 2.56 16 3 N -0.33 -9.88 12.70 -47.38 -0.60 -10.48 16 4 N -0.47 -11.57 7.36 -48.00 -0.35 -11.92 16 5 H 0.45 7.72 8.96 -213.32 -1.91 5.80 16 6 C 0.10 2.48 7.21 41.41 0.30 2.78 16 7 C -0.09 -1.71 10.22 71.24 0.73 -0.98 16 8 C -0.24 -6.51 4.59 -20.14 -0.09 -6.61 16 9 C -0.05 -1.22 5.64 29.10 0.16 -1.05 16 10 C 0.50 17.47 7.82 87.66 0.69 18.16 16 11 O -0.60 -26.47 16.03 -3.01 -0.05 -26.52 16 12 N -0.70 -25.19 5.48 -463.06 -2.54 -27.72 16 13 C 0.18 8.18 5.50 86.38 0.48 8.65 16 14 C 0.00 0.15 1.47 -52.93 -0.08 0.07 16 15 C -0.50 -24.61 8.59 25.60 0.22 -24.39 16 16 H 0.07 3.18 7.82 -2.91 -0.02 3.16 16 17 C 0.02 1.16 5.43 84.66 0.46 1.62 16 18 N -0.91 -50.98 12.65 21.45 0.27 -50.71 16 19 Si 0.95 40.98 29.54 68.60 2.03 43.01 16 20 H -0.26 -10.34 7.11 99.48 0.71 -9.64 16 21 H -0.29 -12.47 7.11 99.48 0.71 -11.76 16 22 H -0.29 -12.62 7.11 99.48 0.71 -11.91 16 23 C -0.17 -6.80 9.96 30.62 0.30 -6.50 16 24 C -0.16 -7.23 9.14 30.62 0.28 -6.95 16 25 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 26 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 27 H 0.07 1.68 7.92 -2.39 -0.02 1.66 16 28 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.10 1.56 7.14 -2.39 -0.02 1.54 16 31 H 0.12 2.29 7.92 -2.39 -0.02 2.27 16 32 H 0.12 2.29 7.14 -2.39 -0.02 2.27 16 33 H 0.41 12.79 8.33 -92.71 -0.77 12.02 16 34 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.03 1.43 8.09 -2.39 -0.02 1.41 16 36 H 0.26 13.90 8.32 -92.71 -0.77 13.13 16 37 H 0.09 3.23 8.14 -2.39 -0.02 3.21 16 38 H 0.09 3.03 8.14 -2.39 -0.02 3.01 16 39 H 0.06 2.88 8.14 -2.39 -0.02 2.86 16 40 H 0.06 3.16 8.14 -2.38 -0.02 3.14 16 Total: -1.00 -70.37 342.91 1.61 -68.76 By element: Atomic # 1 Polarization: 30.75 SS G_CDS: -1.62 Total: 29.13 kcal Atomic # 6 Polarization: -18.02 SS G_CDS: 4.48 Total: -13.54 kcal Atomic # 7 Polarization: -97.61 SS G_CDS: -3.22 Total: -100.83 kcal Atomic # 8 Polarization: -26.47 SS G_CDS: -0.05 Total: -26.52 kcal Atomic # 14 Polarization: 40.98 SS G_CDS: 2.03 Total: 43.01 kcal Total: -70.37 1.61 -68.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357668007.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.835 kcal (2) G-P(sol) polarization free energy of solvation -70.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.758 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds