Wall clock time and date at job start Mon Mar 30 2020 02:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50703 * 119.99680 * 2 1 4 4 N 1.46502 * 109.46717 * 125.00193 * 3 2 1 5 5 C 1.46496 * 120.00114 * 269.99849 * 4 3 2 6 6 C 1.50697 * 109.47310 * 270.00400 * 5 4 3 7 7 H 1.08005 * 119.99871 * 359.97438 * 6 5 4 8 8 C 1.37883 * 120.00401 * 180.02562 * 6 5 4 9 9 N 1.31507 * 119.99757 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 120.00061 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.46902 * 89.99715 * 10 8 6 12 12 H 1.48494 * 109.47147 * 209.99808 * 10 8 6 13 13 H 1.48498 * 109.47126 * 329.99749 * 10 8 6 14 14 C 1.34774 * 120.00129 * 89.99488 * 4 3 2 15 15 O 1.21605 * 120.00263 * 179.97438 * 14 4 3 16 16 C 1.47428 * 120.00019 * 0.02562 * 14 4 3 17 17 C 1.41295 * 126.41360 * 270.02158 * 16 14 4 18 18 C 1.50698 * 125.98509 * 359.73410 * 17 16 14 19 19 N 1.30439 * 108.02242 * 179.73480 * 17 16 14 20 20 N 1.39929 * 108.90076 * 0.02562 * 19 17 16 21 21 C 1.46500 * 125.75433 * 180.02562 * 20 19 17 22 22 C 1.34257 * 108.49157 * 359.97438 * 20 19 17 23 23 C 1.50708 * 126.29152 * 180.02562 * 22 20 19 24 24 H 1.08000 * 119.99712 * 359.97438 * 1 2 3 25 25 H 1.07998 * 120.00202 * 179.97438 * 1 2 3 26 26 H 1.08000 * 119.99712 * 180.02562 * 2 1 3 27 27 H 1.08994 * 109.47044 * 5.00382 * 3 2 1 28 28 H 1.09002 * 109.47014 * 244.99509 * 3 2 1 29 29 H 1.09005 * 109.47299 * 30.00278 * 5 4 3 30 30 H 1.09002 * 109.47778 * 149.99951 * 5 4 3 31 31 H 0.97002 * 119.99880 * 180.02562 * 9 8 6 32 32 H 1.09003 * 109.47297 * 90.00296 * 18 17 16 33 33 H 1.09003 * 109.47176 * 210.00109 * 18 17 16 34 34 H 1.08999 * 109.47207 * 330.00340 * 18 17 16 35 35 H 1.09001 * 109.46860 * 89.98006 * 21 20 19 36 36 H 1.09005 * 109.47588 * 209.97262 * 21 20 19 37 37 H 1.08995 * 109.47881 * 329.98014 * 21 20 19 38 38 H 1.09003 * 109.46901 * 269.97277 * 23 22 20 39 39 H 1.08998 * 109.47200 * 29.97399 * 23 22 20 40 40 H 1.09002 * 109.46916 * 149.98048 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.5589 1.8648 2.4249 6 6 2.8442 3.3435 2.4805 7 1 3.3039 3.8369 1.6369 8 6 2.5193 4.0665 3.6088 9 7 1.9600 3.4656 4.6362 10 14 2.8737 5.8992 3.6779 11 1 1.7009 6.6499 3.1616 12 1 3.1381 6.2996 5.0832 13 1 4.0635 6.2051 2.8438 14 6 4.2497 0.8661 0.9824 15 8 5.0220 0.8887 1.9215 16 6 4.6875 0.3302 -0.3193 17 6 4.5883 -1.0118 -0.7501 18 6 4.0181 -2.1574 0.0458 19 7 5.0768 -1.0853 -1.9573 20 7 5.5061 0.1870 -2.3508 21 6 6.1139 0.5246 -3.6403 22 6 5.2660 1.0466 -1.3478 23 6 5.5716 2.5223 -1.3453 24 1 -0.5400 0.9353 0.0004 25 1 -0.5400 -0.9353 -0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3585 2.1316 0.0896 28 1 2.6213 1.4026 -0.9314 29 1 1.4888 1.6965 2.5460 30 1 3.0989 1.3602 3.2260 31 1 1.7311 3.9743 5.4298 32 1 2.9492 -2.2401 -0.1510 33 1 4.5137 -3.0838 -0.2446 34 1 4.1790 -1.9770 1.1087 35 1 5.3331 0.8022 -4.3485 36 1 6.8007 1.3611 -3.5106 37 1 6.6601 -0.3381 -4.0216 38 1 6.5765 2.6846 -0.9554 39 1 5.5100 2.9079 -2.3629 40 1 4.8493 3.0418 -0.7155 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359435749.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:39 Heat of formation + Delta-G solvation = 60.357600 kcal Electronic energy + Delta-G solvation = -22215.674184 eV Core-core repulsion = 19032.965896 eV Total energy + Delta-G solvation = -3182.708289 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.28994 -38.50824 -35.49037 -34.19330 -33.12316 -32.12851 -31.71556 -29.54189 -28.10252 -26.85763 -25.67443 -25.18138 -23.07341 -20.89091 -19.77663 -19.34881 -18.34483 -16.66759 -16.47179 -15.97739 -15.57373 -15.26578 -14.57980 -14.30281 -14.03773 -13.59666 -13.46289 -13.39204 -13.12869 -12.73407 -12.60735 -12.51158 -12.29095 -12.05995 -11.94598 -11.77584 -11.47630 -11.23397 -10.94277 -10.78292 -10.57506 -10.52966 -10.16426 -9.60577 -9.10827 -9.01645 -8.96216 -8.41269 -8.17001 -7.60451 -6.00958 -4.05451 1.86176 2.46286 2.54199 2.73687 3.30990 3.37487 3.39954 3.46032 4.18518 4.44650 4.53757 4.66628 4.95057 4.99504 5.13690 5.20766 5.23697 5.32741 5.42790 5.43900 5.54969 5.56669 5.74857 5.81604 5.94012 5.98568 6.01004 6.12018 6.18717 6.31447 6.69462 6.90395 7.00781 7.03268 7.18508 7.50803 7.62723 7.79812 7.96098 8.27469 8.50100 8.93986 9.18970 9.59417 11.07131 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017924 B = 0.005973 C = 0.005200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.805073 B = 4686.607992 C = 5383.668905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.166 4.166 3 C 0.143 3.857 4 N -0.585 5.585 5 C 0.247 3.753 6 C -0.524 4.524 7 H 0.057 0.943 8 C 0.061 3.939 9 N -0.894 5.894 10 Si 0.896 3.104 11 H -0.281 1.281 12 H -0.286 1.286 13 H -0.274 1.274 14 C 0.586 3.414 15 O -0.536 6.536 16 C -0.262 4.262 17 C 0.110 3.890 18 C -0.079 4.079 19 N -0.304 5.304 20 N -0.369 5.369 21 C 0.102 3.898 22 C 0.117 3.883 23 C -0.097 4.097 24 H 0.097 0.903 25 H 0.093 0.907 26 H 0.108 0.892 27 H 0.084 0.916 28 H 0.070 0.930 29 H 0.033 0.967 30 H 0.044 0.956 31 H 0.263 0.737 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.082 0.918 35 H 0.074 0.926 36 H 0.086 0.914 37 H 0.088 0.912 38 H 0.085 0.915 39 H 0.071 0.929 40 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.655 -5.964 -16.204 17.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.185 4.185 3 C 0.019 3.981 4 N -0.315 5.315 5 C 0.128 3.872 6 C -0.563 4.563 7 H 0.075 0.925 8 C -0.141 4.141 9 N -0.533 5.533 10 Si 0.724 3.276 11 H -0.207 1.207 12 H -0.211 1.211 13 H -0.199 1.199 14 C 0.371 3.629 15 O -0.413 6.413 16 C -0.277 4.277 17 C -0.056 4.056 18 C -0.137 4.137 19 N -0.127 5.127 20 N -0.149 5.149 21 C -0.040 4.040 22 C -0.013 4.013 23 C -0.155 4.155 24 H 0.116 0.884 25 H 0.111 0.889 26 H 0.126 0.874 27 H 0.102 0.898 28 H 0.088 0.912 29 H 0.051 0.949 30 H 0.062 0.938 31 H 0.072 0.928 32 H 0.098 0.902 33 H 0.093 0.907 34 H 0.101 0.899 35 H 0.093 0.907 36 H 0.105 0.895 37 H 0.107 0.893 38 H 0.103 0.897 39 H 0.090 0.910 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 3.315 -6.621 -16.613 18.188 hybrid contribution -0.034 1.557 0.609 1.672 sum 3.281 -5.064 -16.004 17.104 Atomic orbital electron populations 1.23782 0.95808 1.01598 1.01423 1.23612 0.96324 0.99493 0.99113 1.20469 0.92703 0.95044 0.89906 1.48171 1.10220 1.59696 1.13412 1.19292 0.95459 0.93725 0.78768 1.21422 1.40417 0.93317 1.01150 0.92506 1.24922 0.95157 0.98611 0.95364 1.69932 1.42106 1.36064 1.05172 0.86529 0.78529 0.85193 0.77348 1.20708 1.21129 1.19924 1.17242 0.82112 0.77650 0.85915 1.90752 1.52980 1.56231 1.41325 1.20165 1.15524 0.93939 0.98052 1.22201 0.97245 0.94328 0.91848 1.20336 1.00451 0.93866 0.99041 1.77001 1.21482 0.99571 1.14599 1.48028 1.48233 1.05553 1.13127 1.21830 0.98288 1.02479 0.81371 1.21323 0.98112 0.93825 0.88026 1.20552 1.04204 0.87482 1.03290 0.88443 0.88879 0.87445 0.89780 0.91175 0.94892 0.93813 0.92761 0.90174 0.90654 0.89947 0.90739 0.89525 0.89289 0.89680 0.90967 0.88746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.61 14.32 29.01 0.42 -2.19 16 2 C -0.17 -2.59 9.85 -36.03 -0.35 -2.94 16 3 C 0.14 2.51 5.67 -5.19 -0.03 2.48 16 4 N -0.58 -12.72 2.44 -177.71 -0.43 -13.16 16 5 C 0.25 6.48 5.16 -5.20 -0.03 6.46 16 6 C -0.52 -14.70 9.39 -34.44 -0.32 -15.03 16 7 H 0.06 1.57 7.81 -52.48 -0.41 1.16 16 8 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 9 N -0.89 -26.50 13.29 55.43 0.74 -25.76 16 10 Si 0.90 21.64 29.54 -169.99 -5.02 16.61 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 13 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 14 C 0.59 12.96 6.83 -12.52 -0.09 12.88 16 15 O -0.54 -14.25 16.69 5.27 0.09 -14.16 16 16 C -0.26 -4.79 4.13 -105.07 -0.43 -5.22 16 17 C 0.11 1.82 7.17 -82.02 -0.59 1.24 16 18 C -0.08 -1.09 9.76 36.00 0.35 -0.74 16 19 N -0.30 -4.82 12.50 33.89 0.42 -4.40 16 20 N -0.37 -5.08 3.98 -63.34 -0.25 -5.34 16 21 C 0.10 0.85 11.06 59.85 0.66 1.51 16 22 C 0.12 1.81 6.66 -81.60 -0.54 1.26 16 23 C -0.10 -1.25 9.70 36.01 0.35 -0.90 16 24 H 0.10 1.32 7.84 -52.49 -0.41 0.91 16 25 H 0.09 1.11 8.06 -52.49 -0.42 0.69 16 26 H 0.11 1.61 5.02 -52.49 -0.26 1.34 16 27 H 0.08 1.49 7.72 -51.93 -0.40 1.09 16 28 H 0.07 1.15 6.61 -51.93 -0.34 0.81 16 29 H 0.03 0.88 8.07 -51.93 -0.42 0.46 16 30 H 0.04 1.30 7.42 -51.93 -0.39 0.91 16 31 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 32 H 0.08 0.99 5.92 -51.93 -0.31 0.68 16 33 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.08 1.24 8.01 -51.93 -0.42 0.82 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.09 0.54 7.62 -51.93 -0.40 0.15 16 37 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.07 0.67 7.69 -51.93 -0.40 0.27 16 40 H 0.09 1.42 7.96 -51.93 -0.41 1.01 16 LS Contribution 341.54 15.07 5.15 5.15 Total: -1.00 -34.84 341.54 -5.83 -40.67 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: -5.81 Total: -0.07 kcal Atomic # 6 Polarization: 1.16 SS G_CDS: -0.70 Total: 0.45 kcal Atomic # 7 Polarization: -49.13 SS G_CDS: 0.47 Total: -48.65 kcal Atomic # 8 Polarization: -14.25 SS G_CDS: 0.09 Total: -14.16 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -34.84 -5.83 -40.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359435749.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.028 kcal (2) G-P(sol) polarization free energy of solvation -34.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.671 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds