Wall clock time and date at job start Mon Mar 30 2020 02:09:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50703 * 119.99680 * 2 1 4 4 N 1.46502 * 109.46717 * 125.00193 * 3 2 1 5 5 C 1.46496 * 120.00114 * 269.99849 * 4 3 2 6 6 C 1.50697 * 109.47310 * 270.00400 * 5 4 3 7 7 H 1.08005 * 119.99871 * 359.97438 * 6 5 4 8 8 C 1.37883 * 120.00401 * 180.02562 * 6 5 4 9 9 N 1.31507 * 119.99757 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 120.00061 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.46902 * 89.99715 * 10 8 6 12 12 H 1.48494 * 109.47147 * 209.99808 * 10 8 6 13 13 H 1.48498 * 109.47126 * 329.99749 * 10 8 6 14 14 C 1.34774 * 120.00129 * 89.99488 * 4 3 2 15 15 O 1.21605 * 120.00263 * 179.97438 * 14 4 3 16 16 C 1.47428 * 120.00019 * 0.02562 * 14 4 3 17 17 C 1.41295 * 126.41360 * 270.02158 * 16 14 4 18 18 C 1.50698 * 125.98509 * 359.73410 * 17 16 14 19 19 N 1.30439 * 108.02242 * 179.73480 * 17 16 14 20 20 N 1.39929 * 108.90076 * 0.02562 * 19 17 16 21 21 C 1.46500 * 125.75433 * 180.02562 * 20 19 17 22 22 C 1.34257 * 108.49157 * 359.97438 * 20 19 17 23 23 C 1.50708 * 126.29152 * 180.02562 * 22 20 19 24 24 H 1.08000 * 119.99712 * 359.97438 * 1 2 3 25 25 H 1.07998 * 120.00202 * 179.97438 * 1 2 3 26 26 H 1.08000 * 119.99712 * 180.02562 * 2 1 3 27 27 H 1.08994 * 109.47044 * 5.00382 * 3 2 1 28 28 H 1.09002 * 109.47014 * 244.99509 * 3 2 1 29 29 H 1.09005 * 109.47299 * 30.00278 * 5 4 3 30 30 H 1.09002 * 109.47778 * 149.99951 * 5 4 3 31 31 H 0.97002 * 119.99880 * 180.02562 * 9 8 6 32 32 H 1.09003 * 109.47297 * 90.00296 * 18 17 16 33 33 H 1.09003 * 109.47176 * 210.00109 * 18 17 16 34 34 H 1.08999 * 109.47207 * 330.00340 * 18 17 16 35 35 H 1.09001 * 109.46860 * 89.98006 * 21 20 19 36 36 H 1.09005 * 109.47588 * 209.97262 * 21 20 19 37 37 H 1.08995 * 109.47881 * 329.98014 * 21 20 19 38 38 H 1.09003 * 109.46901 * 269.97277 * 23 22 20 39 39 H 1.08998 * 109.47200 * 29.97399 * 23 22 20 40 40 H 1.09002 * 109.46916 * 149.98048 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.5589 1.8648 2.4249 6 6 2.8442 3.3435 2.4805 7 1 3.3039 3.8369 1.6369 8 6 2.5193 4.0665 3.6088 9 7 1.9600 3.4656 4.6362 10 14 2.8737 5.8992 3.6779 11 1 1.7009 6.6499 3.1616 12 1 3.1381 6.2996 5.0832 13 1 4.0635 6.2051 2.8438 14 6 4.2497 0.8661 0.9824 15 8 5.0220 0.8887 1.9215 16 6 4.6875 0.3302 -0.3193 17 6 4.5883 -1.0118 -0.7501 18 6 4.0181 -2.1574 0.0458 19 7 5.0768 -1.0853 -1.9573 20 7 5.5061 0.1870 -2.3508 21 6 6.1139 0.5246 -3.6403 22 6 5.2660 1.0466 -1.3478 23 6 5.5716 2.5223 -1.3453 24 1 -0.5400 0.9353 0.0004 25 1 -0.5400 -0.9353 -0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3585 2.1316 0.0896 28 1 2.6213 1.4026 -0.9314 29 1 1.4888 1.6965 2.5460 30 1 3.0989 1.3602 3.2260 31 1 1.7311 3.9743 5.4298 32 1 2.9492 -2.2401 -0.1510 33 1 4.5137 -3.0838 -0.2446 34 1 4.1790 -1.9770 1.1087 35 1 5.3331 0.8022 -4.3485 36 1 6.8007 1.3611 -3.5106 37 1 6.6601 -0.3381 -4.0216 38 1 6.5765 2.6846 -0.9554 39 1 5.5100 2.9079 -2.3629 40 1 4.8493 3.0418 -0.7155 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359435749.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:38 Heat of formation + Delta-G solvation = 37.570718 kcal Electronic energy + Delta-G solvation = -22216.662298 eV Core-core repulsion = 19032.965896 eV Total energy + Delta-G solvation = -3183.696402 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.51100 -40.21355 -37.15489 -35.35048 -34.99206 -33.68203 -33.01123 -30.53643 -29.88352 -28.26225 -26.90969 -26.56942 -24.93117 -22.37142 -21.04113 -20.47205 -19.84246 -18.59726 -18.08218 -17.51626 -16.86946 -16.60952 -16.18203 -16.00262 -15.40203 -14.86057 -14.66808 -14.50389 -14.31150 -14.07000 -14.04993 -13.90740 -13.45800 -13.38354 -13.28588 -13.01959 -12.92509 -12.84610 -12.76956 -12.55057 -12.20395 -12.08227 -11.78246 -11.64300 -10.75249 -10.60790 -10.33998 -10.11619 -9.49102 -9.41412 -8.18466 -6.32934 0.68351 1.28436 1.39140 1.42355 1.46449 1.48809 1.52466 1.76292 2.38793 2.60505 3.11454 3.44300 3.57005 3.91054 3.94915 4.15654 4.22318 4.30550 4.36214 4.40870 4.43482 4.55045 4.66669 4.68069 4.79150 4.81082 4.89044 4.94889 5.00764 5.07266 5.11003 5.26859 5.50028 5.55867 5.72113 5.78695 5.97347 5.98892 6.09784 6.60275 6.72392 6.78597 7.30719 7.49124 8.89116 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017924 B = 0.005973 C = 0.005200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.805073 B = 4686.607992 C = 5383.668905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.190 4.190 3 C 0.145 3.855 4 N -0.585 5.585 5 C 0.264 3.736 6 C -0.540 4.540 7 H 0.057 0.943 8 C 0.008 3.992 9 N -0.929 5.929 10 Si 0.967 3.033 11 H -0.263 1.263 12 H -0.283 1.283 13 H -0.269 1.269 14 C 0.590 3.410 15 O -0.596 6.596 16 C -0.300 4.300 17 C 0.104 3.896 18 C -0.077 4.077 19 N -0.313 5.313 20 N -0.357 5.357 21 C 0.087 3.913 22 C 0.126 3.874 23 C -0.095 4.095 24 H 0.100 0.900 25 H 0.119 0.881 26 H 0.113 0.887 27 H 0.079 0.921 28 H 0.084 0.916 29 H 0.023 0.977 30 H -0.002 1.002 31 H 0.266 0.734 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.060 0.940 35 H 0.097 0.903 36 H 0.113 0.887 37 H 0.100 0.900 38 H 0.091 0.909 39 H 0.116 0.884 40 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.652 -5.178 -19.112 19.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.209 4.209 3 C 0.023 3.977 4 N -0.313 5.313 5 C 0.143 3.857 6 C -0.578 4.578 7 H 0.075 0.925 8 C -0.191 4.191 9 N -0.568 5.568 10 Si 0.792 3.208 11 H -0.188 1.188 12 H -0.209 1.209 13 H -0.194 1.194 14 C 0.378 3.622 15 O -0.477 6.477 16 C -0.315 4.315 17 C -0.062 4.062 18 C -0.136 4.136 19 N -0.136 5.136 20 N -0.137 5.137 21 C -0.052 4.052 22 C -0.006 4.006 23 C -0.154 4.154 24 H 0.118 0.882 25 H 0.137 0.863 26 H 0.131 0.869 27 H 0.097 0.903 28 H 0.102 0.898 29 H 0.041 0.959 30 H 0.016 0.984 31 H 0.075 0.925 32 H 0.113 0.887 33 H 0.114 0.886 34 H 0.079 0.921 35 H 0.115 0.885 36 H 0.131 0.869 37 H 0.119 0.881 38 H 0.110 0.890 39 H 0.135 0.865 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.288 -5.856 -19.600 20.719 hybrid contribution -0.046 1.283 1.433 1.924 sum 3.242 -4.574 -18.168 19.013 Atomic orbital electron populations 1.24041 0.95207 1.02995 0.98289 1.23491 0.96932 0.98527 1.01912 1.20595 0.92091 0.96286 0.88712 1.48121 1.11170 1.59079 1.12966 1.18759 0.93946 0.93001 0.80032 1.21679 1.40569 0.94102 1.01475 0.92523 1.25854 0.94674 1.03743 0.94790 1.70062 1.42878 1.38096 1.05798 0.85417 0.78950 0.79056 0.77417 1.18845 1.20864 1.19404 1.17753 0.81325 0.76377 0.86789 1.90699 1.54523 1.58692 1.43763 1.19883 1.18988 0.95423 0.97210 1.22429 0.97389 0.94095 0.92251 1.20373 1.01600 0.94124 0.97474 1.76958 1.21674 1.00820 1.14098 1.48442 1.46731 1.04449 1.14074 1.22363 0.99500 1.04100 0.79224 1.21579 0.96539 0.94912 0.87583 1.20633 1.03574 0.85617 1.05537 0.88162 0.86299 0.86948 0.90284 0.89815 0.95904 0.98436 0.92470 0.88671 0.88579 0.92078 0.88468 0.86865 0.88125 0.89045 0.86540 0.91394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.36 14.32 67.78 0.97 -3.39 16 2 C -0.19 -5.79 9.85 25.64 0.25 -5.54 16 3 C 0.15 5.16 5.67 85.63 0.49 5.65 16 4 N -0.58 -26.55 2.44 -834.39 -2.04 -28.58 16 5 C 0.26 14.63 5.16 85.63 0.44 15.08 16 6 C -0.54 -31.23 9.39 25.60 0.24 -30.99 16 7 H 0.06 3.20 7.81 -2.91 -0.02 3.18 16 8 C 0.01 0.48 5.46 84.66 0.46 0.94 16 9 N -0.93 -56.50 13.29 21.45 0.28 -56.22 16 10 Si 0.97 44.62 29.54 68.60 2.03 46.65 16 11 H -0.26 -11.37 7.11 99.48 0.71 -10.67 16 12 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 13 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 14 C 0.59 27.35 6.83 86.66 0.59 27.94 16 15 O -0.60 -33.76 16.69 -4.05 -0.07 -33.83 16 16 C -0.30 -11.06 4.13 -20.15 -0.08 -11.14 16 17 C 0.10 3.41 7.17 43.52 0.31 3.72 16 18 C -0.08 -2.15 9.76 71.24 0.70 -1.45 16 19 N -0.31 -9.36 12.50 -46.68 -0.58 -9.94 16 20 N -0.36 -8.92 3.98 -354.30 -1.41 -10.33 16 21 C 0.09 1.10 11.06 127.77 1.41 2.51 16 22 C 0.13 3.72 6.66 42.14 0.28 4.00 16 23 C -0.10 -2.28 9.70 71.24 0.69 -1.59 16 24 H 0.10 2.55 7.84 -2.91 -0.02 2.53 16 25 H 0.12 2.50 8.06 -2.91 -0.02 2.47 16 26 H 0.11 3.31 5.02 -2.91 -0.01 3.30 16 27 H 0.08 2.83 7.72 -2.39 -0.02 2.82 16 28 H 0.08 2.71 6.61 -2.39 -0.02 2.69 16 29 H 0.02 1.29 8.07 -2.38 -0.02 1.27 16 30 H 0.00 -0.16 7.42 -2.39 -0.02 -0.18 16 31 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 32 H 0.10 2.29 5.92 -2.39 -0.01 2.28 16 33 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 34 H 0.06 1.94 8.01 -2.39 -0.02 1.92 16 35 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.11 0.88 7.62 -2.38 -0.02 0.86 16 37 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 39 H 0.12 1.69 7.69 -2.39 -0.02 1.68 16 40 H 0.07 2.02 7.96 -2.39 -0.02 2.00 16 Total: -1.00 -79.35 341.54 6.00 -73.35 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: 1.03 Total: 13.16 kcal Atomic # 6 Polarization: -1.02 SS G_CDS: 6.75 Total: 5.73 kcal Atomic # 7 Polarization: -101.32 SS G_CDS: -3.74 Total: -105.07 kcal Atomic # 8 Polarization: -33.76 SS G_CDS: -0.07 Total: -33.83 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -79.35 6.00 -73.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359435749.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.921 kcal (2) G-P(sol) polarization free energy of solvation -79.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds