Wall clock time and date at job start Mon Mar 30 2020 01:55:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.32160 * 120.53774 * 2 1 4 4 C 1.31854 * 120.97029 * 180.02562 * 3 2 1 5 5 N 1.31891 * 122.09530 * 0.02562 * 4 3 2 6 6 C 1.32126 * 120.96382 * 0.02562 * 5 4 3 7 7 C 1.39936 * 120.53915 * 180.02562 * 2 1 3 8 8 C 1.47830 * 120.93894 * 359.97438 * 7 2 1 9 9 O 1.21557 * 119.99704 * 5.97305 * 8 7 2 10 10 N 1.34768 * 120.00282 * 185.96364 * 8 7 2 11 11 C 1.46497 * 120.00337 * 179.97438 * 10 8 7 12 12 C 1.52995 * 109.47353 * 180.02562 * 11 10 8 13 13 C 1.53005 * 109.47283 * 300.00211 * 12 11 10 14 14 C 1.53002 * 109.47438 * 60.00118 * 12 11 10 15 15 C 1.53004 * 109.47430 * 180.02562 * 12 11 10 16 16 C 1.50697 * 109.47257 * 179.97438 * 15 12 11 17 17 H 1.08002 * 119.99994 * 359.97438 * 16 15 12 18 18 C 1.37877 * 120.00152 * 180.02562 * 16 15 12 19 19 N 1.31516 * 119.99850 * 359.97438 * 18 16 15 20 20 Si 1.86791 * 120.00274 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47538 * 59.99529 * 20 18 16 22 22 H 1.48503 * 109.47599 * 179.97438 * 20 18 16 23 23 H 1.48505 * 109.47277 * 299.99718 * 20 18 16 24 24 H 1.08993 * 109.47457 * 96.56832 * 1 2 3 25 25 H 1.09010 * 109.46932 * 216.56855 * 1 2 3 26 26 H 1.09000 * 109.46928 * 336.56390 * 1 2 3 27 27 H 1.07995 * 118.95475 * 179.97438 * 4 3 2 28 28 H 1.08000 * 120.54020 * 180.02562 * 6 5 4 29 29 H 0.97006 * 119.99523 * 0.02562 * 10 8 7 30 30 H 1.08998 * 109.47432 * 300.00574 * 11 10 8 31 31 H 1.09004 * 109.46725 * 60.00909 * 11 10 8 32 32 H 1.08998 * 109.47137 * 59.99752 * 13 12 11 33 33 H 1.08995 * 109.47275 * 179.97438 * 13 12 11 34 34 H 1.08996 * 109.47058 * 300.00010 * 13 12 11 35 35 H 1.08998 * 109.46860 * 60.00242 * 14 12 11 36 36 H 1.08995 * 109.47638 * 180.02562 * 14 12 11 37 37 H 1.08998 * 109.46830 * 300.00155 * 14 12 11 38 38 H 1.08997 * 109.46676 * 300.00187 * 15 12 11 39 39 H 1.09004 * 109.46944 * 60.00210 * 15 12 11 40 40 H 0.96996 * 120.00253 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1785 1.1383 0.0000 4 6 3.4970 1.1482 -0.0005 5 7 4.2062 0.0362 -0.0015 6 6 3.6165 -1.1461 -0.0026 7 6 2.2180 -1.2052 -0.0005 8 6 1.5122 -2.5041 -0.0006 9 8 0.3020 -2.5381 -0.1096 10 7 2.2103 -3.6505 0.1202 11 6 1.5108 -4.9377 0.1207 12 6 2.5277 -6.0708 0.2705 13 6 3.5153 -6.0276 -0.8974 14 6 3.2881 -5.9031 1.5876 15 6 1.7972 -7.4152 0.2704 16 6 2.7990 -8.5313 0.4173 17 1 3.8516 -8.3046 0.5018 18 6 2.3720 -9.8421 0.4427 19 7 1.0903 -10.1182 0.3394 20 14 3.6137 -11.2256 0.6255 21 1 4.3508 -11.0635 1.9044 22 1 2.9047 -12.5304 0.6253 23 1 4.5728 -11.1828 -0.5074 24 1 -0.3634 -0.1175 -1.0208 25 1 -0.3633 -0.8254 0.6123 26 1 -0.3633 0.9429 0.4087 27 1 4.0127 2.0971 -0.0009 28 1 4.2039 -2.0524 -0.0030 29 1 3.1761 -3.6233 0.2075 30 1 0.8076 -4.9687 0.9530 31 1 0.9689 -5.0571 -0.8175 32 1 4.0358 -5.0699 -0.8978 33 1 4.2400 -6.8346 -0.7905 34 1 2.9737 -6.1471 -1.8357 35 1 2.5846 -5.9340 2.4196 36 1 4.0129 -6.7101 1.6941 37 1 3.8086 -4.9455 1.5872 38 1 1.0935 -7.4463 1.1022 39 1 1.2559 -7.5345 -0.6682 40 1 0.7899 -11.0403 0.3569 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359761931.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:30 Heat of formation + Delta-G solvation = -5.798239 kcal Electronic energy + Delta-G solvation = -21286.467744 eV Core-core repulsion = 18100.890723 eV Total energy + Delta-G solvation = -3185.577021 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.53389 -39.48058 -37.25501 -34.83163 -33.75726 -32.87020 -32.05696 -28.98046 -27.19076 -26.59576 -26.50029 -25.15250 -23.27746 -22.78593 -20.81237 -18.75992 -18.07013 -17.43838 -16.93868 -16.33392 -15.80311 -15.48719 -14.79485 -14.55631 -14.34384 -14.00234 -13.65183 -13.35166 -13.17805 -13.10684 -12.85940 -12.44101 -12.21490 -12.10806 -11.85313 -11.24692 -11.05896 -10.91401 -10.86823 -10.69156 -10.48900 -10.32499 -9.95487 -9.91710 -9.82345 -9.60867 -9.24736 -8.99631 -8.89221 -8.39765 -6.03998 -4.05695 0.17758 0.70527 2.74542 3.11529 3.29361 3.35145 3.36310 3.52394 3.71594 3.75426 4.06139 4.41495 4.47468 4.68728 4.95549 5.22298 5.31399 5.40513 5.49989 5.52835 5.59753 5.65096 5.82971 6.06823 6.10589 6.12709 6.18773 6.29264 6.41811 6.55468 6.58697 6.64103 6.97638 7.00068 7.04230 7.48070 7.58381 7.69090 7.69935 7.94008 8.14410 8.35625 8.98774 9.57763 11.07387 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.037280 B = 0.003468 C = 0.003248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.889091 B = 8072.864576 C = 8618.661826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.234 3.766 3 N -0.527 5.527 4 C 0.314 3.686 5 N -0.528 5.528 6 C 0.185 3.815 7 C -0.241 4.241 8 C 0.561 3.439 9 O -0.529 6.529 10 N -0.712 5.712 11 C 0.128 3.872 12 C -0.074 4.074 13 C -0.128 4.128 14 C -0.128 4.128 15 C 0.037 3.963 16 C -0.514 4.514 17 H 0.059 0.941 18 C 0.057 3.943 19 N -0.894 5.894 20 Si 0.889 3.111 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.277 1.277 24 H 0.091 0.909 25 H 0.108 0.892 26 H 0.075 0.925 27 H 0.201 0.799 28 H 0.171 0.829 29 H 0.397 0.603 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.027 0.973 33 H 0.068 0.932 34 H 0.049 0.951 35 H 0.049 0.951 36 H 0.068 0.932 37 H 0.027 0.973 38 H 0.019 0.981 39 H 0.019 0.981 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.116 19.012 -0.403 19.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.087 3.913 3 N -0.241 5.241 4 C 0.027 3.973 5 N -0.242 5.242 6 C 0.018 3.982 7 C -0.249 4.249 8 C 0.346 3.654 9 O -0.407 6.407 10 N -0.363 5.363 11 C 0.006 3.994 12 C -0.074 4.074 13 C -0.185 4.185 14 C -0.185 4.185 15 C 0.000 4.000 16 C -0.552 4.552 17 H 0.077 0.923 18 C -0.144 4.144 19 N -0.533 5.533 20 Si 0.717 3.283 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.203 1.203 24 H 0.110 0.890 25 H 0.127 0.873 26 H 0.093 0.907 27 H 0.217 0.783 28 H 0.188 0.812 29 H 0.233 0.767 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.046 0.954 33 H 0.087 0.913 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.087 0.913 37 H 0.046 0.954 38 H 0.037 0.963 39 H 0.037 0.963 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.586 19.682 -0.482 20.012 hybrid contribution 0.860 -1.636 0.107 1.851 sum 4.447 18.046 -0.375 18.590 Atomic orbital electron populations 1.21106 0.86464 1.04466 1.04883 1.22034 0.98259 0.86469 0.84498 1.68424 1.10256 1.29799 1.15646 1.25216 0.86828 0.97265 0.87979 1.68453 1.41508 0.98941 1.15290 1.23497 0.90938 0.96719 0.87060 1.21747 0.96246 0.96623 1.10292 1.17735 0.87020 0.83133 0.77542 1.90748 1.13250 1.86947 1.49750 1.46133 1.10923 1.06339 1.72943 1.21727 0.95290 0.80228 1.02199 1.20935 0.95074 0.96290 0.95106 1.21777 0.99283 0.99644 0.97829 1.21775 1.00317 0.99547 0.96895 1.19080 0.95236 0.88170 0.97549 1.21134 0.93365 0.90691 1.49991 0.92288 1.25006 0.95034 0.98899 0.95480 1.69947 1.13687 1.19296 1.50419 0.86707 0.81406 0.81548 0.78617 1.20309 1.21383 1.20303 0.89044 0.87347 0.90658 0.78279 0.81195 0.76709 0.91353 0.91335 0.95395 0.91255 0.93221 0.93235 0.91262 0.95379 0.96287 0.96285 0.92930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.21 8.98 36.00 0.32 -0.88 16 2 C 0.23 2.77 6.87 -81.82 -0.56 2.21 16 3 N -0.53 -5.89 10.36 -10.48 -0.11 -6.00 16 4 C 0.31 3.01 12.27 -92.02 -1.13 1.88 16 5 N -0.53 -5.56 10.42 -14.24 -0.15 -5.71 16 6 C 0.18 1.90 10.80 -16.78 -0.18 1.72 16 7 C -0.24 -2.86 5.91 -104.69 -0.62 -3.48 16 8 C 0.56 7.74 7.73 -12.34 -0.10 7.64 16 9 O -0.53 -8.67 13.54 5.32 0.07 -8.59 16 10 N -0.71 -9.40 4.91 -61.26 -0.30 -9.70 16 11 C 0.13 2.08 4.56 -4.05 -0.02 2.06 16 12 C -0.07 -1.31 0.54 -154.51 -0.08 -1.39 16 13 C -0.13 -2.10 8.05 37.16 0.30 -1.80 16 14 C -0.13 -2.11 8.05 37.16 0.30 -1.81 16 15 C 0.04 0.87 4.04 -27.88 -0.11 0.76 16 16 C -0.51 -13.23 7.65 -34.44 -0.26 -13.50 16 17 H 0.06 1.45 5.68 -52.49 -0.30 1.16 16 18 C 0.06 1.55 5.46 -17.82 -0.10 1.46 16 19 N -0.89 -25.90 13.29 55.43 0.74 -25.17 16 20 Si 0.89 20.79 29.54 -169.99 -5.02 15.77 16 21 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 22 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 23 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 24 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 25 H 0.11 1.31 5.97 -51.92 -0.31 1.00 16 26 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.20 1.16 8.06 -52.49 -0.42 0.74 16 28 H 0.17 1.32 6.58 -52.49 -0.35 0.97 16 29 H 0.40 4.35 4.34 -40.82 -0.18 4.18 16 30 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.03 0.36 6.86 -51.93 -0.36 0.00 16 33 H 0.07 1.24 6.62 -51.93 -0.34 0.90 16 34 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.07 1.24 6.62 -51.93 -0.34 0.90 16 37 H 0.03 0.37 6.86 -51.93 -0.36 0.01 16 38 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 325.31 15.07 4.90 4.90 Total: -1.00 -30.38 325.31 -7.58 -37.96 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -5.47 Total: 1.67 kcal Atomic # 6 Polarization: -2.90 SS G_CDS: -2.24 Total: -5.14 kcal Atomic # 7 Polarization: -46.75 SS G_CDS: 0.18 Total: -46.57 kcal Atomic # 8 Polarization: -8.67 SS G_CDS: 0.07 Total: -8.59 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -30.38 -7.58 -37.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359761931.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.164 kcal (2) G-P(sol) polarization free energy of solvation -30.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds