Wall clock time and date at job start Mon Mar 30 2020 01:55:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.32160 * 120.53774 * 2 1 4 4 C 1.31854 * 120.97029 * 180.02562 * 3 2 1 5 5 N 1.31891 * 122.09530 * 0.02562 * 4 3 2 6 6 C 1.32126 * 120.96382 * 0.02562 * 5 4 3 7 7 C 1.39936 * 120.53915 * 180.02562 * 2 1 3 8 8 C 1.47830 * 120.93894 * 359.97438 * 7 2 1 9 9 O 1.21557 * 119.99704 * 5.97305 * 8 7 2 10 10 N 1.34768 * 120.00282 * 185.96364 * 8 7 2 11 11 C 1.46497 * 120.00337 * 179.97438 * 10 8 7 12 12 C 1.52995 * 109.47353 * 180.02562 * 11 10 8 13 13 C 1.53005 * 109.47283 * 300.00211 * 12 11 10 14 14 C 1.53002 * 109.47438 * 60.00118 * 12 11 10 15 15 C 1.53004 * 109.47430 * 180.02562 * 12 11 10 16 16 C 1.50697 * 109.47257 * 179.97438 * 15 12 11 17 17 H 1.08002 * 119.99994 * 359.97438 * 16 15 12 18 18 C 1.37877 * 120.00152 * 180.02562 * 16 15 12 19 19 N 1.31516 * 119.99850 * 359.97438 * 18 16 15 20 20 Si 1.86791 * 120.00274 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47538 * 59.99529 * 20 18 16 22 22 H 1.48503 * 109.47599 * 179.97438 * 20 18 16 23 23 H 1.48505 * 109.47277 * 299.99718 * 20 18 16 24 24 H 1.08993 * 109.47457 * 96.56832 * 1 2 3 25 25 H 1.09010 * 109.46932 * 216.56855 * 1 2 3 26 26 H 1.09000 * 109.46928 * 336.56390 * 1 2 3 27 27 H 1.07995 * 118.95475 * 179.97438 * 4 3 2 28 28 H 1.08000 * 120.54020 * 180.02562 * 6 5 4 29 29 H 0.97006 * 119.99523 * 0.02562 * 10 8 7 30 30 H 1.08998 * 109.47432 * 300.00574 * 11 10 8 31 31 H 1.09004 * 109.46725 * 60.00909 * 11 10 8 32 32 H 1.08998 * 109.47137 * 59.99752 * 13 12 11 33 33 H 1.08995 * 109.47275 * 179.97438 * 13 12 11 34 34 H 1.08996 * 109.47058 * 300.00010 * 13 12 11 35 35 H 1.08998 * 109.46860 * 60.00242 * 14 12 11 36 36 H 1.08995 * 109.47638 * 180.02562 * 14 12 11 37 37 H 1.08998 * 109.46830 * 300.00155 * 14 12 11 38 38 H 1.08997 * 109.46676 * 300.00187 * 15 12 11 39 39 H 1.09004 * 109.46944 * 60.00210 * 15 12 11 40 40 H 0.96996 * 120.00253 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1785 1.1383 0.0000 4 6 3.4970 1.1482 -0.0005 5 7 4.2062 0.0362 -0.0015 6 6 3.6165 -1.1461 -0.0026 7 6 2.2180 -1.2052 -0.0005 8 6 1.5122 -2.5041 -0.0006 9 8 0.3020 -2.5381 -0.1096 10 7 2.2103 -3.6505 0.1202 11 6 1.5108 -4.9377 0.1207 12 6 2.5277 -6.0708 0.2705 13 6 3.5153 -6.0276 -0.8974 14 6 3.2881 -5.9031 1.5876 15 6 1.7972 -7.4152 0.2704 16 6 2.7990 -8.5313 0.4173 17 1 3.8516 -8.3046 0.5018 18 6 2.3720 -9.8421 0.4427 19 7 1.0903 -10.1182 0.3394 20 14 3.6137 -11.2256 0.6255 21 1 4.3508 -11.0635 1.9044 22 1 2.9047 -12.5304 0.6253 23 1 4.5728 -11.1828 -0.5074 24 1 -0.3634 -0.1175 -1.0208 25 1 -0.3633 -0.8254 0.6123 26 1 -0.3633 0.9429 0.4087 27 1 4.0127 2.0971 -0.0009 28 1 4.2039 -2.0524 -0.0030 29 1 3.1761 -3.6233 0.2075 30 1 0.8076 -4.9687 0.9530 31 1 0.9689 -5.0571 -0.8175 32 1 4.0358 -5.0699 -0.8978 33 1 4.2400 -6.8346 -0.7905 34 1 2.9737 -6.1471 -1.8357 35 1 2.5846 -5.9340 2.4196 36 1 4.0129 -6.7101 1.6941 37 1 3.8086 -4.9455 1.5872 38 1 1.0935 -7.4463 1.1022 39 1 1.2559 -7.5345 -0.6682 40 1 0.7899 -11.0403 0.3569 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359761931.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:30 Heat of formation + Delta-G solvation = -24.533882 kcal Electronic energy + Delta-G solvation = -21287.280183 eV Core-core repulsion = 18100.890723 eV Total energy + Delta-G solvation = -3186.389459 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.39061 -40.61026 -38.66949 -35.79602 -35.08627 -34.18423 -33.44811 -29.93919 -29.00511 -27.94558 -27.71362 -26.18255 -24.79009 -23.88339 -21.96692 -20.10687 -18.97114 -18.55062 -18.29720 -17.76802 -16.85507 -16.71991 -16.35763 -15.88574 -15.49986 -15.02223 -14.93719 -14.63867 -14.34487 -14.16013 -13.98705 -13.91839 -13.72082 -13.27663 -12.83279 -12.75526 -12.71992 -12.57195 -12.30833 -12.21340 -11.99541 -11.68806 -11.51960 -11.11160 -10.88215 -10.79623 -10.74085 -10.48894 -10.41793 -10.08475 -8.12609 -6.20048 -0.65751 -0.11199 1.44113 1.45503 1.52660 1.73270 2.00380 2.45922 2.67768 2.94797 3.03997 3.22206 3.26300 3.57767 3.76811 3.98656 4.09955 4.22054 4.28596 4.42431 4.66148 4.69453 4.73736 4.77790 4.80737 4.97421 5.01175 5.12375 5.14638 5.28819 5.38835 5.46601 5.53378 5.55580 5.58711 5.77775 5.82420 5.91906 6.31402 6.43215 6.90239 6.95367 7.08193 7.47792 8.99628 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.037280 B = 0.003468 C = 0.003248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.889091 B = 8072.864576 C = 8618.661826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.225 3.775 3 N -0.538 5.538 4 C 0.318 3.682 5 N -0.536 5.536 6 C 0.194 3.806 7 C -0.255 4.255 8 C 0.564 3.436 9 O -0.560 6.560 10 N -0.700 5.700 11 C 0.142 3.858 12 C -0.066 4.066 13 C -0.124 4.124 14 C -0.124 4.124 15 C 0.040 3.960 16 C -0.514 4.514 17 H 0.073 0.927 18 C -0.004 4.004 19 N -0.938 5.938 20 Si 0.956 3.044 21 H -0.267 1.267 22 H -0.293 1.293 23 H -0.267 1.267 24 H 0.090 0.910 25 H 0.092 0.908 26 H 0.088 0.912 27 H 0.236 0.764 28 H 0.198 0.802 29 H 0.411 0.589 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.071 0.929 33 H 0.055 0.945 34 H 0.038 0.962 35 H 0.038 0.962 36 H 0.055 0.945 37 H 0.070 0.930 38 H -0.013 1.013 39 H -0.013 1.013 40 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.953 20.733 -0.290 21.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.079 3.921 3 N -0.253 5.253 4 C 0.032 3.968 5 N -0.250 5.250 6 C 0.027 3.973 7 C -0.263 4.263 8 C 0.351 3.649 9 O -0.440 6.440 10 N -0.353 5.353 11 C 0.018 3.982 12 C -0.066 4.066 13 C -0.181 4.181 14 C -0.181 4.181 15 C 0.003 3.997 16 C -0.552 4.552 17 H 0.091 0.909 18 C -0.201 4.201 19 N -0.580 5.580 20 Si 0.781 3.219 21 H -0.192 1.192 22 H -0.219 1.219 23 H -0.192 1.192 24 H 0.109 0.891 25 H 0.110 0.890 26 H 0.107 0.893 27 H 0.252 0.748 28 H 0.214 0.786 29 H 0.250 0.750 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.089 0.911 33 H 0.074 0.926 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.074 0.926 37 H 0.089 0.911 38 H 0.005 0.995 39 H 0.006 0.994 40 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 6.467 21.432 -0.366 22.389 hybrid contribution -0.036 -2.068 0.066 2.070 sum 6.431 19.363 -0.299 20.405 Atomic orbital electron populations 1.21031 0.86415 1.04489 1.04577 1.22188 0.98664 0.86921 0.84360 1.68501 1.11091 1.29321 1.16411 1.25983 0.86436 0.98468 0.85878 1.68580 1.41467 0.99179 1.15782 1.23903 0.90263 0.97773 0.85334 1.21530 0.96996 0.95241 1.12523 1.17998 0.86667 0.83741 0.76533 1.90745 1.14799 1.87426 1.51045 1.45841 1.11429 1.05017 1.72989 1.21298 0.94685 0.81308 1.00862 1.20725 0.95310 0.93509 0.97058 1.21723 0.98514 1.01559 0.96343 1.21719 0.99738 1.01373 0.95289 1.18960 0.94676 0.91585 0.94501 1.21582 0.94328 0.91174 1.48142 0.90905 1.25917 0.96719 1.01868 0.95593 1.70106 1.15879 1.19592 1.52389 0.85636 0.79038 0.78021 0.79164 1.19189 1.21860 1.19163 0.89123 0.88974 0.89285 0.74803 0.78559 0.75038 0.92862 0.92833 0.91053 0.92563 0.94277 0.94314 0.92557 0.91127 0.99453 0.99437 0.93209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.28 8.98 71.24 0.64 -1.64 16 2 C 0.22 5.00 6.87 42.92 0.29 5.29 16 3 N -0.54 -10.84 10.36 -187.06 -1.94 -12.78 16 4 C 0.32 5.10 12.27 180.84 2.22 7.32 16 5 N -0.54 -9.45 10.42 -198.98 -2.07 -11.52 16 6 C 0.19 3.35 10.80 85.07 0.92 4.27 16 7 C -0.26 -5.56 5.91 -19.91 -0.12 -5.68 16 8 C 0.56 14.94 7.73 86.78 0.67 15.61 16 9 O -0.56 -18.49 13.54 -3.89 -0.05 -18.54 16 10 N -0.70 -17.16 4.91 -466.01 -2.29 -19.45 16 11 C 0.14 4.61 4.56 86.38 0.39 5.00 16 12 C -0.07 -2.30 0.54 -52.18 -0.03 -2.33 16 13 C -0.12 -3.84 8.05 71.98 0.58 -3.26 16 14 C -0.12 -3.85 8.05 71.98 0.58 -3.27 16 15 C 0.04 1.97 4.04 29.85 0.12 2.09 16 16 C -0.51 -26.74 7.65 25.60 0.20 -26.54 16 17 H 0.07 3.52 5.68 -2.91 -0.02 3.51 16 18 C 0.00 -0.22 5.46 84.65 0.46 0.24 16 19 N -0.94 -56.15 13.29 21.45 0.28 -55.87 16 20 Si 0.96 42.76 29.54 68.60 2.03 44.78 16 21 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 22 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 23 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 24 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 25 H 0.09 2.27 5.97 -2.38 -0.01 2.26 16 26 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 27 H 0.24 1.80 8.06 -2.91 -0.02 1.78 16 28 H 0.20 2.14 6.58 -2.91 -0.02 2.12 16 29 H 0.41 7.49 4.34 -92.70 -0.40 7.09 16 30 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.05 1.90 8.14 -2.38 -0.02 1.88 16 32 H 0.07 1.57 6.86 -2.39 -0.02 1.56 16 33 H 0.06 1.90 6.62 -2.39 -0.02 1.88 16 34 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.06 1.90 6.62 -2.39 -0.02 1.89 16 37 H 0.07 1.58 6.86 -2.39 -0.02 1.57 16 38 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 39 H -0.01 -0.70 8.14 -2.38 -0.02 -0.71 16 40 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 Total: -1.00 -67.78 325.31 3.54 -64.24 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: 0.66 Total: 12.05 kcal Atomic # 6 Polarization: -9.83 SS G_CDS: 6.93 Total: -2.90 kcal Atomic # 7 Polarization: -93.61 SS G_CDS: -6.02 Total: -99.63 kcal Atomic # 8 Polarization: -18.49 SS G_CDS: -0.05 Total: -18.54 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.78 kcal Total: -67.78 3.54 -64.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359761931.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.703 kcal (2) G-P(sol) polarization free energy of solvation -67.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds