Wall clock time and date at job start Mon Mar 30 2020 01:57:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.36537 * 119.94374 * 2 1 4 4 C 1.40559 * 118.59538 * 180.27761 * 3 2 1 5 5 N 1.33946 * 120.79401 * 179.72568 * 4 3 2 6 6 C 1.32567 * 120.00159 * 355.13688 * 5 4 3 7 7 O 1.21662 * 119.99820 * 64.80144 * 6 5 4 8 8 C 1.50697 * 120.00084 * 244.80829 * 6 5 4 9 9 C 1.52996 * 109.47073 * 179.97438 * 8 6 5 10 10 C 1.50709 * 109.46849 * 179.97438 * 9 8 6 11 11 H 1.08001 * 120.00113 * 0.02562 * 10 9 8 12 12 C 1.37875 * 119.99762 * 180.02562 * 10 9 8 13 13 N 1.31516 * 120.00001 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 119.99895 * 180.02562 * 12 10 9 15 15 H 1.48505 * 109.47293 * 60.00115 * 14 12 10 16 16 H 1.48499 * 109.47108 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.47223 * 299.99771 * 14 12 10 18 18 N 1.36906 * 118.41349 * 359.52012 * 4 3 2 19 19 H 0.97001 * 120.14825 * 180.20393 * 18 4 3 20 20 C 1.34634 * 119.69946 * 0.46124 * 18 4 3 21 21 C 1.50701 * 119.26458 * 179.75796 * 20 18 4 22 22 C 1.53003 * 109.47495 * 275.02274 * 21 20 18 23 23 C 1.52997 * 109.47099 * 35.02727 * 21 20 18 24 24 N 1.30714 * 121.46145 * 359.78786 * 20 18 4 25 25 H 1.09008 * 109.47434 * 89.99894 * 1 2 3 26 26 H 1.09006 * 109.47298 * 209.99735 * 1 2 3 27 27 H 1.08998 * 109.47224 * 329.99968 * 1 2 3 28 28 H 1.08003 * 120.69910 * 359.97438 * 3 2 1 29 29 H 1.09006 * 109.46972 * 299.99991 * 8 6 5 30 30 H 1.09004 * 109.46995 * 59.99241 * 8 6 5 31 31 H 1.08993 * 109.47218 * 299.99604 * 9 8 6 32 32 H 1.08993 * 109.47035 * 60.00238 * 9 8 6 33 33 H 0.97008 * 119.99818 * 179.97438 * 13 12 10 34 34 H 1.08998 * 109.47088 * 155.02530 * 21 20 18 35 35 H 1.09007 * 109.46629 * 60.00298 * 22 21 20 36 36 H 1.08993 * 109.47064 * 180.02562 * 22 21 20 37 37 H 1.08989 * 109.47094 * 300.00468 * 22 21 20 38 38 H 1.09006 * 109.47527 * 59.99673 * 23 21 20 39 39 H 1.09003 * 109.47159 * 179.97438 * 23 21 20 40 40 H 1.08995 * 109.47240 * 299.99406 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1884 1.1831 0.0000 4 6 3.5936 1.1501 -0.0060 5 7 4.3062 2.2842 -0.0117 6 6 3.6899 3.4538 -0.1092 7 8 2.9467 3.8257 0.7794 8 6 3.9096 4.3227 -1.3207 9 6 3.0876 5.6059 -1.1838 10 6 3.3079 6.4751 -2.3951 11 1 3.9678 6.1451 -3.1838 12 6 2.6670 7.6916 -2.4964 13 7 1.8638 8.0936 -1.5357 14 14 2.9394 8.7686 -3.9981 15 1 2.5125 8.0357 -5.2171 16 1 2.1417 10.0141 -3.8652 17 1 4.3801 9.1122 -4.1061 18 7 4.2166 -0.0691 -0.0015 19 1 5.1852 -0.1212 -0.0024 20 6 3.4787 -1.1952 -0.0009 21 6 4.1746 -2.5319 -0.0015 22 6 4.5211 -2.9260 -1.4387 23 6 5.4585 -2.4388 0.8255 24 7 2.1722 -1.1548 -0.0005 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 1.6590 2.1244 -0.0004 29 1 4.9671 4.5749 -1.3999 30 1 3.5965 3.7846 -2.2154 31 1 2.0303 5.3533 -1.1049 32 1 3.4005 6.1441 -0.2892 33 1 1.4131 8.9497 -1.6068 34 1 3.5164 -3.2844 0.4329 35 1 5.1794 -2.1735 -1.8731 36 1 5.0240 -3.8930 -1.4391 37 1 3.6065 -2.9923 -2.0278 38 1 5.2117 -2.1581 1.8494 39 1 5.9616 -3.4058 0.8255 40 1 6.1167 -1.6865 0.3911 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361718231.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:20 Heat of formation + Delta-G solvation = 8.828098 kcal Electronic energy + Delta-G solvation = -20959.005508 eV Core-core repulsion = 17774.062733 eV Total energy + Delta-G solvation = -3184.942775 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.77834 -39.00614 -36.56408 -35.59068 -33.41714 -33.21437 -31.31450 -30.71995 -28.44261 -27.76297 -25.85641 -25.08806 -23.45041 -21.37129 -21.00430 -19.13120 -18.56853 -17.85136 -16.76958 -15.97441 -15.88356 -15.47065 -14.90789 -14.54268 -14.45984 -14.23231 -13.95983 -13.72577 -13.29706 -13.20956 -12.78036 -12.52885 -12.25061 -12.11881 -11.98419 -11.85110 -11.64125 -11.29223 -11.12921 -10.86794 -10.59798 -10.41781 -10.37755 -9.89086 -9.85157 -9.55500 -9.06963 -8.81267 -8.27099 -7.74182 -5.90955 -3.94968 0.41483 1.34570 2.21980 2.87847 3.36734 3.37960 3.41786 3.42479 3.44614 4.05973 4.36414 4.41245 4.49573 4.51221 4.72385 4.89749 4.99305 5.08067 5.16440 5.21604 5.25770 5.39466 5.43452 5.43963 5.54982 5.64702 5.65768 5.75271 5.94517 6.13231 6.26465 6.41910 6.46556 6.79794 7.10457 7.59482 7.78906 7.90846 7.94588 8.12523 8.45166 8.72063 9.12776 9.67983 11.20019 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.025888 B = 0.003461 C = 0.003327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.332054 B = 8088.533709 C = 8413.256422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.177 3.823 3 C -0.266 4.266 4 C 0.456 3.544 5 N -0.655 5.655 6 C 0.506 3.494 7 O -0.513 6.513 8 C -0.127 4.127 9 C 0.035 3.965 10 C -0.525 4.525 11 H 0.055 0.945 12 C 0.057 3.943 13 N -0.891 5.891 14 Si 0.893 3.107 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.277 1.277 18 N -0.592 5.592 19 H 0.424 0.576 20 C 0.405 3.595 21 C -0.045 4.045 22 C -0.147 4.147 23 C -0.161 4.161 24 N -0.540 5.540 25 H 0.086 0.914 26 H 0.081 0.919 27 H 0.083 0.917 28 H 0.159 0.841 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.020 0.980 32 H 0.023 0.977 33 H 0.261 0.739 34 H 0.118 0.882 35 H 0.060 0.940 36 H 0.076 0.924 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.080 0.920 40 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.819 -27.489 2.261 27.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.055 3.945 3 C -0.293 4.293 4 C 0.196 3.804 5 N -0.400 5.400 6 C 0.294 3.706 7 O -0.387 6.387 8 C -0.167 4.167 9 C -0.003 4.003 10 C -0.563 4.563 11 H 0.073 0.927 12 C -0.144 4.144 13 N -0.530 5.530 14 Si 0.721 3.279 15 H -0.203 1.203 16 H -0.213 1.213 17 H -0.202 1.202 18 N -0.213 5.213 19 H 0.264 0.736 20 C 0.139 3.861 21 C -0.066 4.066 22 C -0.206 4.206 23 C -0.218 4.218 24 N -0.262 5.262 25 H 0.105 0.895 26 H 0.100 0.900 27 H 0.102 0.898 28 H 0.177 0.823 29 H 0.101 0.899 30 H 0.095 0.905 31 H 0.039 0.961 32 H 0.042 0.958 33 H 0.071 0.929 34 H 0.136 0.864 35 H 0.079 0.921 36 H 0.094 0.906 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.099 0.901 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.438 -27.253 2.845 27.616 hybrid contribution 0.459 1.638 -0.830 1.893 sum 3.897 -25.615 2.015 25.988 Atomic orbital electron populations 1.20787 0.87704 1.04101 1.03786 1.21072 0.97466 0.87250 0.88670 1.22471 0.92347 1.01719 1.12725 1.18422 0.88707 0.84698 0.88546 1.67817 1.37707 0.98245 1.36259 1.21867 0.74808 0.85722 0.88172 1.90723 1.31765 1.76586 1.39636 1.21902 1.03306 0.98135 0.93368 1.18932 0.94840 0.89208 0.97289 1.21204 1.27355 1.03024 1.04764 0.92672 1.25028 0.95227 0.97832 0.96320 1.69995 1.29423 1.21065 1.32516 0.86645 0.78198 0.79813 0.83235 1.20271 1.21279 1.20223 1.42524 1.12469 1.04152 1.62161 0.73596 1.23100 0.88047 0.88196 0.86763 1.20388 0.97058 0.90062 0.99048 1.21879 1.02738 1.02463 0.93472 1.22014 0.95864 1.03750 1.00218 1.67939 1.04707 1.29049 1.24549 0.89509 0.90040 0.89809 0.82308 0.89912 0.90546 0.96131 0.95840 0.92947 0.86414 0.92065 0.90550 0.91282 0.91442 0.90095 0.92053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.05 10.18 36.00 0.37 -0.68 16 2 C 0.18 2.25 6.77 -82.59 -0.56 1.69 16 3 C -0.27 -4.21 8.72 -39.32 -0.34 -4.55 16 4 C 0.46 7.22 7.65 -155.14 -1.19 6.04 16 5 N -0.65 -12.66 10.52 -11.71 -0.12 -12.79 16 6 C 0.51 11.61 6.16 -11.96 -0.07 11.53 16 7 O -0.51 -13.31 15.44 5.22 0.08 -13.23 16 8 C -0.13 -3.00 5.71 -27.89 -0.16 -3.16 16 9 C 0.03 1.00 4.26 -27.88 -0.12 0.89 16 10 C -0.53 -15.69 9.11 -34.44 -0.31 -16.01 16 11 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 12 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 13 N -0.89 -28.26 13.29 55.43 0.74 -27.53 16 14 Si 0.89 22.36 29.54 -169.99 -5.02 17.34 16 15 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 16 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 17 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 18 N -0.59 -6.39 5.13 -9.55 -0.05 -6.44 16 19 H 0.42 3.55 6.92 -40.82 -0.28 3.27 16 20 C 0.41 3.73 6.61 -155.61 -1.03 2.70 16 21 C -0.05 -0.23 3.28 -91.77 -0.30 -0.53 16 22 C -0.15 -0.62 9.18 37.16 0.34 -0.28 16 23 C -0.16 -0.58 8.74 37.16 0.32 -0.25 16 24 N -0.54 -6.01 10.20 -6.88 -0.07 -6.08 16 25 H 0.09 0.76 8.14 -51.92 -0.42 0.34 16 26 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.08 0.83 8.08 -51.93 -0.42 0.41 16 28 H 0.16 2.91 6.37 -52.48 -0.33 2.58 16 29 H 0.08 1.87 8.14 -51.93 -0.42 1.45 16 30 H 0.08 1.68 8.14 -51.93 -0.42 1.26 16 31 H 0.02 0.63 8.10 -51.93 -0.42 0.21 16 32 H 0.02 0.73 8.10 -51.93 -0.42 0.31 16 33 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 34 H 0.12 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 36 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 37 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 38 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 39 H 0.08 0.17 8.14 -51.93 -0.42 -0.26 16 40 H 0.06 0.20 6.66 -51.93 -0.35 -0.14 16 LS Contribution 338.97 15.07 5.11 5.11 Total: -1.00 -37.77 338.97 -8.48 -46.25 By element: Atomic # 1 Polarization: 4.34 SS G_CDS: -5.99 Total: -1.65 kcal Atomic # 6 Polarization: 2.16 SS G_CDS: -3.15 Total: -0.99 kcal Atomic # 7 Polarization: -53.33 SS G_CDS: 0.49 Total: -52.84 kcal Atomic # 8 Polarization: -13.31 SS G_CDS: 0.08 Total: -13.23 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -37.77 -8.48 -46.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361718231.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.079 kcal (2) G-P(sol) polarization free energy of solvation -37.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds