Wall clock time and date at job start Mon Mar 30 2020 01:57:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.36537 * 119.94374 * 2 1 4 4 C 1.40559 * 118.59538 * 180.27761 * 3 2 1 5 5 N 1.33946 * 120.79401 * 179.72568 * 4 3 2 6 6 C 1.32567 * 120.00159 * 355.13688 * 5 4 3 7 7 O 1.21662 * 119.99820 * 64.80144 * 6 5 4 8 8 C 1.50697 * 120.00084 * 244.80829 * 6 5 4 9 9 C 1.52996 * 109.47073 * 179.97438 * 8 6 5 10 10 C 1.50709 * 109.46849 * 179.97438 * 9 8 6 11 11 H 1.08001 * 120.00113 * 0.02562 * 10 9 8 12 12 C 1.37875 * 119.99762 * 180.02562 * 10 9 8 13 13 N 1.31516 * 120.00001 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 119.99895 * 180.02562 * 12 10 9 15 15 H 1.48505 * 109.47293 * 60.00115 * 14 12 10 16 16 H 1.48499 * 109.47108 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.47223 * 299.99771 * 14 12 10 18 18 N 1.36906 * 118.41349 * 359.52012 * 4 3 2 19 19 H 0.97001 * 120.14825 * 180.20393 * 18 4 3 20 20 C 1.34634 * 119.69946 * 0.46124 * 18 4 3 21 21 C 1.50701 * 119.26458 * 179.75796 * 20 18 4 22 22 C 1.53003 * 109.47495 * 275.02274 * 21 20 18 23 23 C 1.52997 * 109.47099 * 35.02727 * 21 20 18 24 24 N 1.30714 * 121.46145 * 359.78786 * 20 18 4 25 25 H 1.09008 * 109.47434 * 89.99894 * 1 2 3 26 26 H 1.09006 * 109.47298 * 209.99735 * 1 2 3 27 27 H 1.08998 * 109.47224 * 329.99968 * 1 2 3 28 28 H 1.08003 * 120.69910 * 359.97438 * 3 2 1 29 29 H 1.09006 * 109.46972 * 299.99991 * 8 6 5 30 30 H 1.09004 * 109.46995 * 59.99241 * 8 6 5 31 31 H 1.08993 * 109.47218 * 299.99604 * 9 8 6 32 32 H 1.08993 * 109.47035 * 60.00238 * 9 8 6 33 33 H 0.97008 * 119.99818 * 179.97438 * 13 12 10 34 34 H 1.08998 * 109.47088 * 155.02530 * 21 20 18 35 35 H 1.09007 * 109.46629 * 60.00298 * 22 21 20 36 36 H 1.08993 * 109.47064 * 180.02562 * 22 21 20 37 37 H 1.08989 * 109.47094 * 300.00468 * 22 21 20 38 38 H 1.09006 * 109.47527 * 59.99673 * 23 21 20 39 39 H 1.09003 * 109.47159 * 179.97438 * 23 21 20 40 40 H 1.08995 * 109.47240 * 299.99406 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1884 1.1831 0.0000 4 6 3.5936 1.1501 -0.0060 5 7 4.3062 2.2842 -0.0117 6 6 3.6899 3.4538 -0.1092 7 8 2.9467 3.8257 0.7794 8 6 3.9096 4.3227 -1.3207 9 6 3.0876 5.6059 -1.1838 10 6 3.3079 6.4751 -2.3951 11 1 3.9678 6.1451 -3.1838 12 6 2.6670 7.6916 -2.4964 13 7 1.8638 8.0936 -1.5357 14 14 2.9394 8.7686 -3.9981 15 1 2.5125 8.0357 -5.2171 16 1 2.1417 10.0141 -3.8652 17 1 4.3801 9.1122 -4.1061 18 7 4.2166 -0.0691 -0.0015 19 1 5.1852 -0.1212 -0.0024 20 6 3.4787 -1.1952 -0.0009 21 6 4.1746 -2.5319 -0.0015 22 6 4.5211 -2.9260 -1.4387 23 6 5.4585 -2.4388 0.8255 24 7 2.1722 -1.1548 -0.0005 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 1.6590 2.1244 -0.0004 29 1 4.9671 4.5749 -1.3999 30 1 3.5965 3.7846 -2.2154 31 1 2.0303 5.3533 -1.1049 32 1 3.4005 6.1441 -0.2892 33 1 1.4131 8.9497 -1.6068 34 1 3.5164 -3.2844 0.4329 35 1 5.1794 -2.1735 -1.8731 36 1 5.0240 -3.8930 -1.4391 37 1 3.6065 -2.9923 -2.0278 38 1 5.2117 -2.1581 1.8494 39 1 5.9616 -3.4058 0.8255 40 1 6.1167 -1.6865 0.3911 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361718231.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:20 Heat of formation + Delta-G solvation = -18.060041 kcal Electronic energy + Delta-G solvation = -20960.171465 eV Core-core repulsion = 17774.062733 eV Total energy + Delta-G solvation = -3186.108733 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.85530 -40.62867 -37.33232 -36.79186 -35.62121 -34.31383 -33.07961 -32.14863 -29.56411 -28.09457 -27.86233 -26.05206 -24.88227 -23.10768 -21.87697 -20.47864 -19.80306 -19.01380 -18.70520 -17.62594 -16.97173 -16.58835 -16.50425 -16.05096 -15.94757 -15.41189 -15.22803 -14.40091 -14.32555 -14.17343 -14.10032 -13.89712 -13.39608 -13.29357 -13.06841 -12.82102 -12.63385 -12.53242 -12.46960 -12.08998 -12.00906 -11.95683 -11.83424 -11.72210 -11.49033 -11.33138 -11.12496 -10.60494 -10.49263 -9.07692 -8.21300 -6.36889 -0.63090 0.10748 1.04359 1.38711 1.44337 1.45032 1.52443 2.22958 2.39882 2.59669 3.10179 3.14619 3.40607 3.51810 3.84209 4.00411 4.04587 4.16948 4.31501 4.40033 4.44103 4.52266 4.63730 4.65684 4.72952 4.81314 4.89251 4.93209 5.00386 5.11203 5.16634 5.22370 5.30668 5.35184 5.41421 5.54371 5.74119 5.78115 6.12446 6.40501 6.59477 6.79816 7.08697 7.33045 8.91172 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.025888 B = 0.003461 C = 0.003327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.332054 B = 8088.533709 C = 8413.256422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.213 3.787 3 C -0.321 4.321 4 C 0.467 3.533 5 N -0.688 5.688 6 C 0.515 3.485 7 O -0.564 6.564 8 C -0.117 4.117 9 C 0.045 3.955 10 C -0.549 4.549 11 H 0.071 0.929 12 C -0.005 4.005 13 N -0.936 5.936 14 Si 0.979 3.021 15 H -0.261 1.261 16 H -0.282 1.282 17 H -0.263 1.263 18 N -0.572 5.572 19 H 0.438 0.562 20 C 0.420 3.580 21 C -0.039 4.039 22 C -0.146 4.146 23 C -0.162 4.162 24 N -0.545 5.545 25 H 0.104 0.896 26 H 0.104 0.896 27 H 0.078 0.922 28 H 0.125 0.875 29 H 0.094 0.906 30 H 0.093 0.907 31 H -0.015 1.015 32 H -0.019 1.019 33 H 0.265 0.735 34 H 0.135 0.865 35 H 0.058 0.942 36 H 0.102 0.898 37 H 0.059 0.941 38 H 0.060 0.940 39 H 0.105 0.895 40 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.905 -30.737 0.573 31.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.089 3.911 3 C -0.349 4.349 4 C 0.211 3.789 5 N -0.437 5.437 6 C 0.305 3.695 7 O -0.442 6.442 8 C -0.157 4.157 9 C 0.007 3.993 10 C -0.587 4.587 11 H 0.089 0.911 12 C -0.203 4.203 13 N -0.576 5.576 14 Si 0.802 3.198 15 H -0.185 1.185 16 H -0.208 1.208 17 H -0.188 1.188 18 N -0.192 5.192 19 H 0.282 0.718 20 C 0.156 3.844 21 C -0.059 4.059 22 C -0.204 4.204 23 C -0.220 4.220 24 N -0.267 5.267 25 H 0.122 0.878 26 H 0.123 0.877 27 H 0.097 0.903 28 H 0.143 0.857 29 H 0.112 0.888 30 H 0.111 0.889 31 H 0.003 0.997 32 H -0.001 1.001 33 H 0.074 0.926 34 H 0.153 0.847 35 H 0.077 0.923 36 H 0.121 0.879 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.124 0.876 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.585 -30.619 1.147 30.982 hybrid contribution 0.060 2.299 -0.244 2.313 sum 4.645 -28.320 0.903 28.713 Atomic orbital electron populations 1.20946 0.85620 1.05017 1.05068 1.21523 0.98955 0.86551 0.84040 1.22229 0.92613 1.01667 1.18345 1.18491 0.88930 0.85184 0.86270 1.67534 1.36410 0.97898 1.41902 1.21681 0.73805 0.87122 0.86930 1.90681 1.34624 1.77751 1.41155 1.21685 1.02776 0.96265 0.95005 1.18693 0.93481 0.91464 0.95618 1.21636 1.27975 1.03755 1.05295 0.91058 1.26182 0.94421 0.99536 1.00171 1.70177 1.30440 1.21779 1.35183 0.85309 0.78734 0.77310 0.78493 1.18546 1.20774 1.18758 1.42618 1.13523 1.02925 1.60152 0.71834 1.24313 0.87832 0.89155 0.83144 1.20683 0.97693 0.87210 1.00331 1.21917 1.02549 1.03822 0.92138 1.22077 0.95087 1.05386 0.99418 1.68144 1.05555 1.27655 1.25348 0.87791 0.87700 0.90270 0.85703 0.88819 0.88866 0.99692 1.00051 0.92644 0.84729 0.92269 0.87925 0.92160 0.92066 0.87597 0.91754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.02 10.18 71.23 0.73 -1.29 16 2 C 0.21 5.25 6.77 41.94 0.28 5.54 16 3 C -0.32 -10.61 8.72 22.44 0.20 -10.41 16 4 C 0.47 15.07 7.65 133.65 1.02 16.10 16 5 N -0.69 -27.68 10.52 -310.42 -3.27 -30.94 16 6 C 0.52 25.25 6.16 88.00 0.54 25.79 16 7 O -0.56 -31.88 15.44 -4.23 -0.07 -31.94 16 8 C -0.12 -5.83 5.71 29.85 0.17 -5.66 16 9 C 0.05 2.77 4.26 29.85 0.13 2.90 16 10 C -0.55 -33.74 9.11 25.60 0.23 -33.51 16 11 H 0.07 4.05 7.74 -2.91 -0.02 4.03 16 12 C -0.01 -0.34 5.46 84.65 0.46 0.13 16 13 N -0.94 -61.62 13.29 21.45 0.28 -61.34 16 14 Si 0.98 46.21 29.54 68.60 2.03 48.23 16 15 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 16 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 17 H -0.26 -11.78 7.11 99.48 0.71 -11.08 16 18 N -0.57 -11.51 5.13 -184.14 -0.95 -12.46 16 19 H 0.44 6.46 6.92 -92.71 -0.64 5.82 16 20 C 0.42 6.64 6.61 138.20 0.91 7.56 16 21 C -0.04 -0.24 3.28 -11.54 -0.04 -0.28 16 22 C -0.15 -0.65 9.18 71.98 0.66 0.01 16 23 C -0.16 -0.54 8.74 71.98 0.63 0.09 16 24 N -0.54 -10.83 10.20 -175.69 -1.79 -12.62 16 25 H 0.10 1.65 8.14 -2.38 -0.02 1.63 16 26 H 0.10 1.48 8.14 -2.38 -0.02 1.46 16 27 H 0.08 1.58 8.08 -2.39 -0.02 1.56 16 28 H 0.13 5.06 6.37 -2.91 -0.02 5.04 16 29 H 0.09 4.38 8.14 -2.38 -0.02 4.36 16 30 H 0.09 4.24 8.14 -2.39 -0.02 4.22 16 31 H -0.02 -1.03 8.10 -2.39 -0.02 -1.05 16 32 H -0.02 -1.30 8.10 -2.39 -0.02 -1.32 16 33 H 0.26 16.21 8.31 -92.70 -0.77 15.44 16 34 H 0.13 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.06 0.32 8.14 -2.38 -0.02 0.30 16 36 H 0.10 0.01 8.14 -2.39 -0.02 -0.01 16 37 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 38 H 0.06 0.33 8.14 -2.38 -0.02 0.31 16 39 H 0.11 -0.07 8.14 -2.39 -0.02 -0.09 16 40 H 0.06 0.20 6.66 -2.39 -0.02 0.19 16 Total: -1.00 -88.15 338.97 2.57 -85.58 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: 0.40 Total: 8.53 kcal Atomic # 6 Polarization: 1.04 SS G_CDS: 5.93 Total: 6.97 kcal Atomic # 7 Polarization: -111.65 SS G_CDS: -5.72 Total: -117.36 kcal Atomic # 8 Polarization: -31.88 SS G_CDS: -0.07 Total: -31.94 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 2.03 Total: 48.23 kcal Total: -88.15 2.57 -85.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361718231.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.517 kcal (2) G-P(sol) polarization free energy of solvation -88.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds