Wall clock time and date at job start Mon Mar 30 2020 01:43:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38572 * 119.96454 * 2 1 4 4 C 1.38816 * 118.07233 * 180.02562 * 3 2 1 5 5 C 1.39720 * 117.89580 * 359.97438 * 4 3 2 6 6 C 1.48161 * 120.18035 * 179.97438 * 5 4 3 7 7 O 1.21512 * 120.00272 * 352.93813 * 6 5 4 8 8 N 1.34778 * 119.99489 * 172.93861 * 6 5 4 9 9 C 1.46499 * 120.00316 * 3.56465 * 8 6 5 10 10 C 1.50706 * 109.46636 * 82.85389 * 9 8 6 11 11 H 1.07994 * 120.00190 * 0.02562 * 10 9 8 12 12 C 1.37874 * 119.99606 * 179.97438 * 10 9 8 13 13 N 1.31516 * 120.00336 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99801 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.47041 * 59.99976 * 14 12 10 16 16 H 1.48507 * 109.47061 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.46978 * 299.99790 * 14 12 10 18 18 C 1.46499 * 119.99610 * 183.57247 * 8 6 5 19 19 C 1.53003 * 109.47747 * 95.67077 * 18 8 6 20 20 C 1.52998 * 109.47261 * 178.14532 * 19 18 8 21 21 C 1.53008 * 109.46692 * 298.14543 * 19 18 8 22 22 N 1.32777 * 119.63562 * 359.97438 * 5 4 3 23 23 N 1.28351 * 122.02834 * 0.02562 * 22 5 4 24 24 H 1.09008 * 109.46981 * 269.97937 * 1 2 3 25 25 H 1.08994 * 109.47320 * 29.97831 * 1 2 3 26 26 H 1.09002 * 109.47189 * 149.98659 * 1 2 3 27 27 H 1.08003 * 120.96546 * 359.97438 * 3 2 1 28 28 H 1.08002 * 121.05252 * 179.97438 * 4 3 2 29 29 H 1.09005 * 109.47083 * 202.85083 * 9 8 6 30 30 H 1.08998 * 109.47413 * 322.85376 * 9 8 6 31 31 H 0.96999 * 120.00084 * 180.02562 * 13 12 10 32 32 H 1.09000 * 109.47077 * 215.67197 * 18 8 6 33 33 H 1.09001 * 109.47242 * 335.66786 * 18 8 6 34 34 H 1.08998 * 109.46649 * 58.13882 * 19 18 8 35 35 H 1.08998 * 109.47104 * 60.00280 * 20 19 18 36 36 H 1.09001 * 109.46605 * 179.97438 * 20 19 18 37 37 H 1.08992 * 109.47119 * 299.99936 * 20 19 18 38 38 H 1.09000 * 109.46957 * 65.09847 * 21 19 18 39 39 H 1.09000 * 109.46872 * 185.09590 * 21 19 18 40 40 H 1.08996 * 109.47216 * 305.09881 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1991 1.2005 0.0000 4 6 3.5865 1.1547 -0.0005 5 6 4.1991 -0.1011 -0.0005 6 6 5.6768 -0.2090 -0.0017 7 8 6.3587 0.7882 -0.1320 8 7 6.2645 -1.4134 0.1419 9 6 5.4438 -2.6243 0.2206 10 6 5.0814 -3.0767 -1.1706 11 1 5.4281 -2.5183 -2.0275 12 6 4.3080 -4.2041 -1.3492 13 7 3.8862 -4.8844 -0.3057 14 14 3.8582 -4.7645 -3.0735 15 1 5.0974 -5.0544 -3.8388 16 1 3.0274 -5.9928 -2.9938 17 1 3.0928 -3.6921 -3.7586 18 6 7.7241 -1.5114 0.2194 19 6 8.1557 -1.5495 1.6868 20 6 9.6763 -1.6985 1.7675 21 6 7.7331 -0.2507 2.3764 22 7 3.4497 -1.1972 0.0005 23 7 2.1672 -1.1449 0.0011 24 1 -0.3633 -0.0004 1.0277 25 1 -0.3633 0.8901 -0.5135 26 1 -0.3634 -0.8899 -0.5140 27 1 1.6743 2.1445 -0.0004 28 1 4.1739 2.0610 -0.0010 29 1 6.0050 -3.4116 0.7240 30 1 4.5341 -2.4109 0.7818 31 1 3.3425 -5.6777 -0.4315 32 1 8.0541 -2.4223 -0.2801 33 1 8.1729 -0.6464 -0.2690 34 1 7.6808 -2.3957 2.1832 35 1 10.1511 -0.8522 1.2710 36 1 9.9837 -1.7251 2.8129 37 1 9.9773 -2.6236 1.2761 38 1 6.6451 -0.1886 2.3989 39 1 8.1189 -0.2385 3.3958 40 1 8.1343 0.6002 1.8259 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396960571.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:53 Heat of formation + Delta-G solvation = 27.491991 kcal Electronic energy + Delta-G solvation = -22303.226857 eV Core-core repulsion = 19119.093409 eV Total energy + Delta-G solvation = -3184.133448 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.68459 -38.93538 -36.01076 -34.34474 -33.23191 -32.51814 -32.11526 -28.43743 -27.28623 -26.81703 -25.73681 -24.35152 -22.97298 -22.49447 -20.27085 -19.04249 -17.38027 -16.62241 -16.24422 -15.51769 -15.35686 -14.93950 -14.49430 -14.39396 -14.20760 -13.74576 -13.28570 -13.10408 -12.91358 -12.47021 -12.29200 -12.18221 -12.12651 -11.90373 -11.68131 -11.41648 -11.01932 -10.82976 -10.80494 -10.61440 -10.34087 -10.20352 -9.90049 -9.82449 -9.56626 -9.26276 -9.18526 -8.77433 -8.21433 -7.63876 -5.94124 -3.93622 1.01046 1.26346 3.29871 3.36770 3.40476 3.44056 3.74178 4.23594 4.41171 4.53243 4.80049 4.95995 5.01218 5.24288 5.29220 5.33494 5.38643 5.43753 5.47959 5.59024 5.63099 5.86607 5.94135 6.01006 6.02251 6.07837 6.14662 6.26575 6.32671 6.38002 6.40299 6.54039 6.61919 6.72874 6.88339 7.55316 7.73301 7.96375 8.29903 8.32991 8.81866 9.06387 9.30068 9.66335 11.14163 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.011647 B = 0.008674 C = 0.005540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2403.426711 B = 3227.303903 C = 5052.518288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.068 3.932 3 C -0.146 4.146 4 C -0.070 4.070 5 C 0.006 3.994 6 C 0.572 3.428 7 O -0.568 6.568 8 N -0.569 5.569 9 C 0.227 3.773 10 C -0.508 4.508 11 H 0.050 0.950 12 C 0.076 3.924 13 N -0.880 5.880 14 Si 0.887 3.113 15 H -0.280 1.280 16 H -0.287 1.287 17 H -0.280 1.280 18 C 0.119 3.881 19 C -0.113 4.113 20 C -0.141 4.141 21 C -0.137 4.137 22 N -0.124 5.124 23 N -0.244 5.244 24 H 0.080 0.920 25 H 0.073 0.927 26 H 0.082 0.918 27 H 0.145 0.855 28 H 0.152 0.848 29 H 0.029 0.971 30 H 0.079 0.921 31 H 0.261 0.739 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.053 0.947 36 H 0.052 0.948 37 H 0.055 0.945 38 H 0.048 0.952 39 H 0.044 0.956 40 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.475 9.799 3.907 10.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.075 4.075 3 C -0.175 4.175 4 C -0.099 4.099 5 C -0.139 4.139 6 C 0.357 3.643 7 O -0.449 6.449 8 N -0.297 5.297 9 C 0.108 3.892 10 C -0.548 4.548 11 H 0.068 0.932 12 C -0.127 4.127 13 N -0.518 5.518 14 Si 0.716 3.284 15 H -0.205 1.205 16 H -0.212 1.212 17 H -0.206 1.206 18 C -0.004 4.004 19 C -0.132 4.132 20 C -0.199 4.199 21 C -0.194 4.194 22 N 0.031 4.969 23 N -0.088 5.088 24 H 0.099 0.901 25 H 0.092 0.908 26 H 0.101 0.899 27 H 0.163 0.837 28 H 0.169 0.831 29 H 0.047 0.953 30 H 0.096 0.904 31 H 0.071 0.929 32 H 0.097 0.903 33 H 0.095 0.905 34 H 0.091 0.909 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.067 0.933 39 H 0.063 0.937 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.269 8.461 3.902 9.321 hybrid contribution -0.359 1.090 -1.099 1.589 sum -0.628 9.550 2.803 9.973 Atomic orbital electron populations 1.20659 0.88154 1.03687 1.03231 1.23122 0.98962 0.91159 0.94283 1.22082 0.94264 0.99575 1.01532 1.22301 0.94859 0.98994 0.93786 1.23006 0.97183 0.91828 1.01880 1.17523 0.85287 0.83790 0.77663 1.90664 1.63858 1.36844 1.53552 1.48242 1.06797 1.08057 1.66582 1.20103 0.90985 0.79710 0.98422 1.21155 1.32104 1.09827 0.91679 0.93196 1.24726 0.95387 0.96351 0.96268 1.69891 1.35363 1.17642 1.28923 0.86749 0.78364 0.77981 0.85352 1.20534 1.21211 1.20586 1.21497 0.80756 1.02754 0.95399 1.21500 0.95863 0.98858 0.96997 1.21739 0.95201 1.01612 1.01302 1.21749 1.01164 0.97386 0.99136 1.74563 0.97810 1.22625 1.01911 1.73491 1.02636 1.23614 1.09083 0.90118 0.90770 0.89948 0.83718 0.83065 0.95293 0.90407 0.92881 0.90339 0.90499 0.90851 0.92800 0.92900 0.92582 0.93299 0.93656 0.92317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.14 10.19 36.01 0.37 -0.77 16 2 C 0.07 1.10 6.87 -82.33 -0.57 0.54 16 3 C -0.15 -2.06 9.86 -39.24 -0.39 -2.44 16 4 C -0.07 -1.17 9.73 -38.81 -0.38 -1.54 16 5 C 0.01 0.12 6.70 -82.83 -0.55 -0.44 16 6 C 0.57 12.45 6.21 -12.18 -0.08 12.37 16 7 O -0.57 -12.45 15.09 5.36 0.08 -12.37 16 8 N -0.57 -12.42 2.22 -176.05 -0.39 -12.81 16 9 C 0.23 5.66 4.79 -5.19 -0.02 5.64 16 10 C -0.51 -13.85 8.01 -34.44 -0.28 -14.12 16 11 H 0.05 1.41 7.81 -52.49 -0.41 1.00 16 12 C 0.08 2.11 5.46 -17.82 -0.10 2.01 16 13 N -0.88 -25.17 13.29 55.43 0.74 -24.44 16 14 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 15 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 16 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 17 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 18 C 0.12 2.21 4.97 -4.04 -0.02 2.19 16 19 C -0.11 -1.79 3.15 -90.61 -0.29 -2.08 16 20 C -0.14 -1.80 9.19 37.16 0.34 -1.46 16 21 C -0.14 -2.17 8.10 37.16 0.30 -1.87 16 22 N -0.12 -2.86 6.25 33.32 0.21 -2.65 16 23 N -0.24 -5.21 11.43 33.62 0.38 -4.83 16 24 H 0.08 0.80 8.14 -51.92 -0.42 0.38 16 25 H 0.07 0.64 8.09 -51.93 -0.42 0.22 16 26 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 27 H 0.15 1.40 8.06 -52.48 -0.42 0.97 16 28 H 0.15 2.21 7.74 -52.49 -0.41 1.80 16 29 H 0.03 0.75 8.02 -51.93 -0.42 0.34 16 30 H 0.08 2.08 5.23 -52.35 -0.27 1.80 16 31 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 32 H 0.08 1.45 8.11 -51.93 -0.42 1.03 16 33 H 0.08 1.42 7.22 -51.93 -0.37 1.05 16 34 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.05 0.87 6.95 -51.93 -0.36 0.51 16 39 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.06 0.95 7.93 -51.93 -0.41 0.54 16 LS Contribution 332.81 15.07 5.02 5.02 Total: -1.00 -31.35 332.81 -6.65 -38.00 By element: Atomic # 1 Polarization: 5.25 SS G_CDS: -6.01 Total: -0.76 kcal Atomic # 6 Polarization: -0.32 SS G_CDS: -1.65 Total: -1.97 kcal Atomic # 7 Polarization: -45.67 SS G_CDS: 0.94 Total: -44.73 kcal Atomic # 8 Polarization: -12.45 SS G_CDS: 0.08 Total: -12.37 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.35 -6.65 -38.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396960571.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.489 kcal (2) G-P(sol) polarization free energy of solvation -31.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds