Wall clock time and date at job start Mon Mar 30 2020 01:43:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38572 * 119.96454 * 2 1 4 4 C 1.38816 * 118.07233 * 180.02562 * 3 2 1 5 5 C 1.39720 * 117.89580 * 359.97438 * 4 3 2 6 6 C 1.48161 * 120.18035 * 179.97438 * 5 4 3 7 7 O 1.21512 * 120.00272 * 352.93813 * 6 5 4 8 8 N 1.34778 * 119.99489 * 172.93861 * 6 5 4 9 9 C 1.46499 * 120.00316 * 3.56465 * 8 6 5 10 10 C 1.50706 * 109.46636 * 82.85389 * 9 8 6 11 11 H 1.07994 * 120.00190 * 0.02562 * 10 9 8 12 12 C 1.37874 * 119.99606 * 179.97438 * 10 9 8 13 13 N 1.31516 * 120.00336 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99801 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.47041 * 59.99976 * 14 12 10 16 16 H 1.48507 * 109.47061 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.46978 * 299.99790 * 14 12 10 18 18 C 1.46499 * 119.99610 * 183.57247 * 8 6 5 19 19 C 1.53003 * 109.47747 * 95.67077 * 18 8 6 20 20 C 1.52998 * 109.47261 * 178.14532 * 19 18 8 21 21 C 1.53008 * 109.46692 * 298.14543 * 19 18 8 22 22 N 1.32777 * 119.63562 * 359.97438 * 5 4 3 23 23 N 1.28351 * 122.02834 * 0.02562 * 22 5 4 24 24 H 1.09008 * 109.46981 * 269.97937 * 1 2 3 25 25 H 1.08994 * 109.47320 * 29.97831 * 1 2 3 26 26 H 1.09002 * 109.47189 * 149.98659 * 1 2 3 27 27 H 1.08003 * 120.96546 * 359.97438 * 3 2 1 28 28 H 1.08002 * 121.05252 * 179.97438 * 4 3 2 29 29 H 1.09005 * 109.47083 * 202.85083 * 9 8 6 30 30 H 1.08998 * 109.47413 * 322.85376 * 9 8 6 31 31 H 0.96999 * 120.00084 * 180.02562 * 13 12 10 32 32 H 1.09000 * 109.47077 * 215.67197 * 18 8 6 33 33 H 1.09001 * 109.47242 * 335.66786 * 18 8 6 34 34 H 1.08998 * 109.46649 * 58.13882 * 19 18 8 35 35 H 1.08998 * 109.47104 * 60.00280 * 20 19 18 36 36 H 1.09001 * 109.46605 * 179.97438 * 20 19 18 37 37 H 1.08992 * 109.47119 * 299.99936 * 20 19 18 38 38 H 1.09000 * 109.46957 * 65.09847 * 21 19 18 39 39 H 1.09000 * 109.46872 * 185.09590 * 21 19 18 40 40 H 1.08996 * 109.47216 * 305.09881 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1991 1.2005 0.0000 4 6 3.5865 1.1547 -0.0005 5 6 4.1991 -0.1011 -0.0005 6 6 5.6768 -0.2090 -0.0017 7 8 6.3587 0.7882 -0.1320 8 7 6.2645 -1.4134 0.1419 9 6 5.4438 -2.6243 0.2206 10 6 5.0814 -3.0767 -1.1706 11 1 5.4281 -2.5183 -2.0275 12 6 4.3080 -4.2041 -1.3492 13 7 3.8862 -4.8844 -0.3057 14 14 3.8582 -4.7645 -3.0735 15 1 5.0974 -5.0544 -3.8388 16 1 3.0274 -5.9928 -2.9938 17 1 3.0928 -3.6921 -3.7586 18 6 7.7241 -1.5114 0.2194 19 6 8.1557 -1.5495 1.6868 20 6 9.6763 -1.6985 1.7675 21 6 7.7331 -0.2507 2.3764 22 7 3.4497 -1.1972 0.0005 23 7 2.1672 -1.1449 0.0011 24 1 -0.3633 -0.0004 1.0277 25 1 -0.3633 0.8901 -0.5135 26 1 -0.3634 -0.8899 -0.5140 27 1 1.6743 2.1445 -0.0004 28 1 4.1739 2.0610 -0.0010 29 1 6.0050 -3.4116 0.7240 30 1 4.5341 -2.4109 0.7818 31 1 3.3425 -5.6777 -0.4315 32 1 8.0541 -2.4223 -0.2801 33 1 8.1729 -0.6464 -0.2690 34 1 7.6808 -2.3957 2.1832 35 1 10.1511 -0.8522 1.2710 36 1 9.9837 -1.7251 2.8129 37 1 9.9773 -2.6236 1.2761 38 1 6.6451 -0.1886 2.3989 39 1 8.1189 -0.2385 3.3958 40 1 8.1343 0.6002 1.8259 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396960571.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:53 Heat of formation + Delta-G solvation = 8.435650 kcal Electronic energy + Delta-G solvation = -22304.053202 eV Core-core repulsion = 19119.093409 eV Total energy + Delta-G solvation = -3184.959793 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.14458 -40.53121 -37.54784 -35.92005 -34.67876 -34.03353 -33.88201 -29.69225 -29.17574 -28.04511 -27.17091 -25.83934 -24.81897 -23.88585 -21.67831 -20.55509 -18.95035 -18.50307 -17.94002 -17.07828 -16.68616 -16.52620 -16.34573 -15.80807 -15.54191 -15.25141 -14.61857 -14.46487 -14.28343 -14.10440 -13.67658 -13.58661 -13.41781 -13.13336 -13.09784 -12.84105 -12.74450 -12.66875 -12.30490 -12.23505 -11.88209 -11.71706 -11.55570 -11.52505 -11.15618 -10.86842 -10.66754 -10.45759 -10.08765 -9.40963 -8.05542 -6.11731 -0.37901 -0.04003 1.37513 1.39231 1.45558 1.74343 2.16323 2.46406 2.76044 3.05888 3.29041 3.52303 3.64573 3.81532 3.92113 4.02250 4.05392 4.15981 4.17971 4.57813 4.62702 4.65204 4.76708 4.79155 4.82008 4.87805 4.95915 5.01573 5.04018 5.06669 5.17059 5.19795 5.37686 5.40124 5.44274 5.54241 5.83684 5.89498 6.24205 6.49147 6.91188 7.16733 7.52262 7.86196 9.01998 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.011647 B = 0.008674 C = 0.005540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2403.426711 B = 3227.303903 C = 5052.518288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.067 3.933 3 C -0.116 4.116 4 C -0.073 4.073 5 C -0.023 4.023 6 C 0.568 3.432 7 O -0.575 6.575 8 N -0.576 5.576 9 C 0.248 3.752 10 C -0.512 4.512 11 H 0.033 0.967 12 C 0.035 3.965 13 N -0.908 5.908 14 Si 0.939 3.061 15 H -0.272 1.272 16 H -0.279 1.279 17 H -0.286 1.286 18 C 0.115 3.885 19 C -0.108 4.108 20 C -0.133 4.133 21 C -0.129 4.129 22 N -0.170 5.170 23 N -0.294 5.294 24 H 0.101 0.899 25 H 0.114 0.886 26 H 0.069 0.931 27 H 0.205 0.795 28 H 0.173 0.827 29 H 0.010 0.990 30 H 0.065 0.935 31 H 0.262 0.738 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.058 0.942 35 H 0.062 0.938 36 H 0.071 0.929 37 H 0.060 0.940 38 H 0.021 0.979 39 H 0.069 0.931 40 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.282 11.924 3.855 12.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.077 4.077 3 C -0.145 4.145 4 C -0.102 4.102 5 C -0.170 4.170 6 C 0.355 3.645 7 O -0.457 6.457 8 N -0.304 5.304 9 C 0.127 3.873 10 C -0.551 4.551 11 H 0.051 0.949 12 C -0.165 4.165 13 N -0.547 5.547 14 Si 0.766 3.234 15 H -0.197 1.197 16 H -0.204 1.204 17 H -0.212 1.212 18 C -0.008 4.008 19 C -0.128 4.128 20 C -0.191 4.191 21 C -0.186 4.186 22 N -0.014 5.014 23 N -0.138 5.138 24 H 0.119 0.881 25 H 0.133 0.867 26 H 0.088 0.912 27 H 0.222 0.778 28 H 0.190 0.810 29 H 0.028 0.972 30 H 0.082 0.918 31 H 0.071 0.929 32 H 0.091 0.909 33 H 0.096 0.904 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.090 0.910 37 H 0.079 0.921 38 H 0.041 0.959 39 H 0.088 0.912 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.055 10.572 3.845 11.299 hybrid contribution -0.221 0.599 -1.057 1.235 sum -1.276 11.171 2.788 11.585 Atomic orbital electron populations 1.20850 0.84598 1.05100 1.04885 1.23926 1.01209 0.90616 0.91940 1.22693 0.93052 1.01106 0.97621 1.22615 0.96406 0.97926 0.93207 1.23098 0.96614 0.93485 1.03772 1.17774 0.86101 0.83509 0.77139 1.90630 1.64302 1.36689 1.54050 1.48212 1.07827 1.07365 1.66955 1.19628 0.90548 0.80191 0.96965 1.21204 1.32069 1.09770 0.92043 0.94864 1.25320 0.95405 0.96532 0.99253 1.69986 1.36233 1.18084 1.30441 0.85925 0.78275 0.77482 0.81700 1.19693 1.20358 1.21227 1.21685 0.79159 1.02448 0.97465 1.21461 0.98167 0.98404 0.94749 1.21690 0.92326 1.02268 1.02800 1.21670 0.99397 0.96995 1.00543 1.74364 0.99036 1.24366 1.03657 1.73339 1.02207 1.26774 1.11440 0.88112 0.86708 0.91166 0.77832 0.80958 0.97242 0.91815 0.92941 0.90861 0.90384 0.92328 0.91890 0.91000 0.92121 0.95938 0.91161 0.92660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.88 10.19 71.24 0.73 -1.15 16 2 C 0.07 2.02 6.87 42.59 0.29 2.31 16 3 C -0.12 -2.85 9.86 22.49 0.22 -2.63 16 4 C -0.07 -2.30 9.73 22.77 0.22 -2.07 16 5 C -0.02 -1.00 6.70 42.00 0.28 -0.72 16 6 C 0.57 25.41 6.21 86.88 0.54 25.95 16 7 O -0.58 -25.37 15.09 -3.75 -0.06 -25.43 16 8 N -0.58 -26.22 2.22 -829.20 -1.84 -28.05 16 9 C 0.25 13.00 4.79 85.64 0.41 13.41 16 10 C -0.51 -29.01 8.01 25.60 0.21 -28.80 16 11 H 0.03 1.95 7.81 -2.91 -0.02 1.92 16 12 C 0.04 2.02 5.46 84.65 0.46 2.48 16 13 N -0.91 -53.63 13.29 21.45 0.28 -53.35 16 14 Si 0.94 45.70 29.54 68.60 2.03 47.72 16 15 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 16 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 17 H -0.29 -14.08 7.11 99.48 0.71 -13.38 16 18 C 0.11 4.39 4.97 86.38 0.43 4.82 16 19 C -0.11 -3.47 3.15 -10.79 -0.03 -3.50 16 20 C -0.13 -3.22 9.19 71.98 0.66 -2.55 16 21 C -0.13 -4.04 8.10 71.98 0.58 -3.46 16 22 N -0.17 -8.13 6.25 -48.48 -0.30 -8.43 16 23 N -0.29 -12.70 11.43 -47.53 -0.54 -13.24 16 24 H 0.10 1.62 8.14 -2.38 -0.02 1.60 16 25 H 0.11 1.34 8.09 -2.39 -0.02 1.32 16 26 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.20 2.55 8.06 -2.91 -0.02 2.53 16 28 H 0.17 4.61 7.74 -2.91 -0.02 4.58 16 29 H 0.01 0.53 8.02 -2.38 -0.02 0.51 16 30 H 0.06 3.62 5.23 -2.93 -0.02 3.60 16 31 H 0.26 14.76 8.31 -92.71 -0.77 13.99 16 32 H 0.07 2.81 8.11 -2.39 -0.02 2.79 16 33 H 0.08 2.93 7.22 -2.39 -0.02 2.92 16 34 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.02 0.80 6.95 -2.39 -0.02 0.78 16 39 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.05 1.76 7.93 -2.39 -0.02 1.74 16 Total: -1.00 -72.18 332.81 5.59 -66.59 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: 1.02 Total: 10.12 kcal Atomic # 6 Polarization: -0.93 SS G_CDS: 5.00 Total: 4.07 kcal Atomic # 7 Polarization: -100.67 SS G_CDS: -2.40 Total: -103.07 kcal Atomic # 8 Polarization: -25.37 SS G_CDS: -0.06 Total: -25.43 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.72 kcal Total: -72.18 5.59 -66.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396960571.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.023 kcal (2) G-P(sol) polarization free energy of solvation -72.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.588 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds