Wall clock time and date at job start Mon Mar 30 2020 02:13:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.39678 * 126.06971 * 2 1 4 4 C 1.38401 * 105.36282 * 180.02562 * 3 2 1 5 5 C 1.47162 * 126.88663 * 179.97438 * 4 3 2 6 6 O 1.21628 * 119.99771 * 200.21720 * 5 4 3 7 7 N 1.34775 * 119.99949 * 20.21218 * 5 4 3 8 8 C 1.46926 * 120.63002 * 6.03181 * 7 5 4 9 9 C 1.53621 * 108.54377 * 126.36907 * 8 7 5 10 10 C 1.53042 * 109.24486 * 54.85161 * 9 8 7 11 11 C 1.50698 * 109.45060 * 178.50021 * 10 9 8 12 12 H 1.07993 * 120.00263 * 120.05962 * 11 10 9 13 13 C 1.37882 * 119.99945 * 300.06419 * 11 10 9 14 14 N 1.31518 * 120.00061 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 120.00194 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.47061 * 89.99809 * 15 13 11 17 17 H 1.48494 * 109.47379 * 209.99915 * 15 13 11 18 18 H 1.48503 * 109.46920 * 330.00423 * 15 13 11 19 19 C 1.53038 * 109.53823 * 298.51512 * 10 9 8 20 20 C 1.46923 * 120.62887 * 186.30714 * 7 5 4 21 21 N 1.36605 * 106.22869 * 359.97438 * 4 3 2 22 22 C 1.46499 * 125.18717 * 179.73394 * 21 4 3 23 23 N 1.28446 * 109.62017 * 0.02562 * 21 4 3 24 24 H 1.08995 * 109.47330 * 89.99803 * 1 2 3 25 25 H 1.09000 * 109.47037 * 209.99625 * 1 2 3 26 26 H 1.09003 * 109.46898 * 329.99873 * 1 2 3 27 27 H 1.08006 * 127.31822 * 0.04586 * 3 2 1 28 28 H 1.09007 * 109.58520 * 246.19866 * 8 7 5 29 29 H 1.08997 * 109.58719 * 6.62177 * 8 7 5 30 30 H 1.09008 * 109.63112 * 294.86337 * 9 8 7 31 31 H 1.08998 * 109.43290 * 174.72408 * 9 8 7 32 32 H 1.09001 * 109.45276 * 58.53372 * 10 9 8 33 33 H 0.96993 * 119.99955 * 180.02562 * 14 13 11 34 34 H 1.09001 * 109.49537 * 301.40819 * 19 10 9 35 35 H 1.08999 * 109.49928 * 181.31595 * 19 10 9 36 36 H 1.09002 * 109.59148 * 353.37842 * 20 7 5 37 37 H 1.09007 * 109.58468 * 113.65593 * 20 7 5 38 38 H 1.08992 * 109.47303 * 84.31478 * 22 21 4 39 39 H 1.09000 * 109.47235 * 204.31528 * 22 21 4 40 40 H 1.09002 * 109.47481 * 324.30953 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3293 1.1290 0.0000 4 6 3.6239 0.6397 -0.0006 5 6 4.8664 1.4283 -0.0014 6 8 5.9093 0.9196 -0.3658 7 7 4.8485 2.7143 0.4017 8 6 3.6279 3.3043 0.9681 9 6 3.9712 3.9212 2.3325 10 6 5.1267 4.9102 2.1626 11 6 5.4429 5.5455 3.4920 12 1 6.4262 5.4328 3.9242 13 6 4.4769 6.2708 4.1567 14 7 3.2792 6.4077 3.6308 15 14 4.8686 7.0578 5.8049 16 1 5.3944 8.4292 5.5861 17 1 3.6337 7.1264 6.6267 18 1 5.8893 6.2434 6.5122 19 6 6.3619 4.1700 1.6446 20 6 6.0474 3.5544 0.2775 21 7 3.5173 -0.7222 -0.0003 22 6 4.6450 -1.6573 -0.0063 23 7 2.2774 -1.0577 -0.0002 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5139 27 1 2.0205 2.1640 0.0007 28 1 3.2514 4.0778 0.2986 29 1 2.8724 2.5291 1.0956 30 1 4.2652 3.1339 3.0268 31 1 3.0988 4.4446 2.7236 32 1 4.8409 5.6833 1.4494 33 1 2.5997 6.9182 4.0982 34 1 6.6334 3.3805 2.3454 35 1 7.1911 4.8706 1.5460 36 1 6.8889 2.9442 -0.0508 37 1 5.8650 4.3463 -0.4490 38 1 4.9949 -1.8111 1.0144 39 1 4.3247 -2.6101 -0.4280 40 1 5.4544 -1.2467 -0.6100 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397181136.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:37 Heat of formation + Delta-G solvation = 49.280994 kcal Electronic energy + Delta-G solvation = -22054.999628 eV Core-core repulsion = 18871.811021 eV Total energy + Delta-G solvation = -3183.188606 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.51614 -39.47601 -36.89916 -34.17022 -33.51093 -31.99103 -30.60399 -29.75294 -29.59923 -26.48693 -25.46872 -23.82546 -22.61190 -21.93004 -20.89827 -19.38451 -18.45752 -16.94075 -16.51636 -16.26208 -16.04596 -15.39789 -14.69247 -14.53504 -13.99940 -13.70016 -13.49814 -13.27479 -13.03076 -12.79955 -12.57480 -12.42877 -12.36978 -12.33077 -12.18356 -11.64403 -11.22436 -10.97424 -10.67405 -10.49271 -10.43335 -10.14315 -9.81196 -9.59852 -9.21852 -9.06935 -8.92779 -8.66369 -8.40296 -8.08208 -6.05743 -4.11736 1.41385 2.43203 2.60145 3.26651 3.31474 3.34067 3.37310 3.44079 4.38951 4.48328 4.59698 5.03383 5.13637 5.20119 5.23932 5.37636 5.50747 5.58403 5.63095 5.66949 5.75651 5.83937 5.88245 5.98082 6.03803 6.07095 6.29857 6.38221 6.56252 6.59731 6.80501 6.81715 6.97935 7.09352 7.23783 7.62321 7.76434 7.88463 8.00375 8.11877 8.35256 8.37223 8.91443 9.53504 10.99866 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021895 B = 0.004858 C = 0.004280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.539873 B = 5762.829826 C = 6541.219826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.020 3.980 3 C -0.195 4.195 4 C -0.024 4.024 5 C 0.584 3.416 6 O -0.560 6.560 7 N -0.579 5.579 8 C 0.071 3.929 9 C -0.122 4.122 10 C 0.047 3.953 11 C -0.513 4.513 12 H 0.055 0.945 13 C 0.062 3.938 14 N -0.891 5.891 15 Si 0.890 3.110 16 H -0.281 1.281 17 H -0.286 1.286 18 H -0.275 1.275 19 C -0.123 4.123 20 C 0.113 3.887 21 N -0.262 5.262 22 C 0.086 3.914 23 N -0.284 5.284 24 H 0.071 0.929 25 H 0.069 0.931 26 H 0.078 0.922 27 H 0.176 0.824 28 H 0.067 0.933 29 H 0.098 0.902 30 H 0.038 0.962 31 H 0.106 0.894 32 H 0.028 0.972 33 H 0.261 0.739 34 H 0.052 0.948 35 H 0.062 0.938 36 H 0.080 0.920 37 H 0.064 0.936 38 H 0.081 0.919 39 H 0.092 0.908 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.204 -10.690 -7.656 13.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.137 4.137 3 C -0.224 4.224 4 C -0.152 4.152 5 C 0.371 3.629 6 O -0.441 6.441 7 N -0.310 5.310 8 C -0.050 4.050 9 C -0.161 4.161 10 C 0.029 3.971 11 C -0.551 4.551 12 H 0.073 0.927 13 C -0.139 4.139 14 N -0.530 5.530 15 Si 0.718 3.282 16 H -0.207 1.207 17 H -0.212 1.212 18 H -0.200 1.200 19 C -0.161 4.161 20 C -0.008 4.008 21 N -0.049 5.049 22 C -0.054 4.054 23 N -0.118 5.118 24 H 0.090 0.910 25 H 0.088 0.912 26 H 0.097 0.903 27 H 0.193 0.807 28 H 0.085 0.915 29 H 0.115 0.885 30 H 0.057 0.943 31 H 0.124 0.876 32 H 0.046 0.954 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.099 0.901 37 H 0.083 0.917 38 H 0.100 0.900 39 H 0.111 0.889 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -2.706 -12.117 -7.789 14.657 hybrid contribution 0.230 1.366 1.032 1.727 sum -2.476 -10.751 -6.757 12.937 Atomic orbital electron populations 1.20074 0.86464 1.03247 1.02585 1.22032 0.97079 0.88910 1.05661 1.22586 0.90341 1.00713 1.08732 1.21449 0.96101 0.85057 1.12619 1.16942 0.85903 0.81886 0.78178 1.90711 1.32044 1.70618 1.50712 1.47943 1.14513 1.09523 1.58987 1.23031 0.85899 0.98444 0.97669 1.22096 1.03875 0.98082 0.92002 1.18657 0.89536 0.92665 0.96255 1.21195 0.97911 1.31487 1.04483 0.92718 1.24950 0.95093 0.96146 0.97706 1.69825 1.03376 1.41073 1.38763 0.86619 0.77790 0.79739 0.84013 1.20695 1.21229 1.20006 1.22013 1.00821 0.99366 0.93920 1.21790 0.86588 0.93196 0.99269 1.45467 1.05013 1.04323 1.50127 1.22300 0.85929 0.92467 1.04732 1.73070 0.89503 1.27979 1.21274 0.90996 0.91181 0.90318 0.80689 0.91520 0.88480 0.94301 0.87593 0.95367 0.92942 0.92891 0.91926 0.90134 0.91722 0.90035 0.88910 0.87214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.65 10.45 36.00 0.38 -0.27 16 2 C 0.02 0.28 7.22 -82.47 -0.60 -0.32 16 3 C -0.20 -2.87 8.66 -38.98 -0.34 -3.21 16 4 C -0.02 -0.39 6.63 -82.06 -0.54 -0.93 16 5 C 0.58 10.51 7.60 -12.64 -0.10 10.41 16 6 O -0.56 -10.83 14.38 5.25 0.08 -10.76 16 7 N -0.58 -10.38 2.97 -173.87 -0.52 -10.90 16 8 C 0.07 1.25 5.28 -3.49 -0.02 1.23 16 9 C -0.12 -2.66 5.17 -26.39 -0.14 -2.79 16 10 C 0.05 1.10 2.06 -91.73 -0.19 0.91 16 11 C -0.51 -13.47 8.56 -34.44 -0.29 -13.76 16 12 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 13 C 0.06 1.64 5.30 -17.82 -0.09 1.55 16 14 N -0.89 -24.03 11.30 55.43 0.63 -23.40 16 15 Si 0.89 20.65 29.54 -169.99 -5.02 15.63 16 16 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 17 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 18 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 19 C -0.12 -2.46 5.30 -26.61 -0.14 -2.60 16 20 C 0.11 2.01 6.44 -3.71 -0.02 1.99 16 21 N -0.26 -4.01 3.75 -63.88 -0.24 -4.25 16 22 C 0.09 1.02 10.90 59.85 0.65 1.67 16 23 N -0.28 -4.33 11.90 33.64 0.40 -3.93 16 24 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 25 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 27 H 0.18 2.29 5.73 -52.48 -0.30 1.99 16 28 H 0.07 1.13 8.14 -51.92 -0.42 0.70 16 29 H 0.10 1.56 3.56 -51.93 -0.18 1.38 16 30 H 0.04 0.88 8.14 -51.92 -0.42 0.46 16 31 H 0.11 2.55 6.03 -51.93 -0.31 2.24 16 32 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 34 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 35 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.08 1.40 7.00 -51.93 -0.36 1.04 16 37 H 0.06 1.07 8.14 -51.92 -0.42 0.65 16 38 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 39 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.11 1.37 6.42 -51.93 -0.33 1.04 16 LS Contribution 319.07 15.07 4.81 4.81 Total: -1.00 -29.95 319.07 -7.00 -36.95 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -5.69 Total: 1.99 kcal Atomic # 6 Polarization: -4.69 SS G_CDS: -1.44 Total: -6.14 kcal Atomic # 7 Polarization: -42.75 SS G_CDS: 0.27 Total: -42.48 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: 0.08 Total: -10.76 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -29.95 -7.00 -36.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397181136.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.226 kcal (2) G-P(sol) polarization free energy of solvation -29.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds