Wall clock time and date at job start Mon Mar 30 2020 02:13:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.39678 * 126.06971 * 2 1 4 4 C 1.38401 * 105.36282 * 180.02562 * 3 2 1 5 5 C 1.47162 * 126.88663 * 179.97438 * 4 3 2 6 6 O 1.21628 * 119.99771 * 200.21720 * 5 4 3 7 7 N 1.34775 * 119.99949 * 20.21218 * 5 4 3 8 8 C 1.46926 * 120.63002 * 6.03181 * 7 5 4 9 9 C 1.53621 * 108.54377 * 126.36907 * 8 7 5 10 10 C 1.53042 * 109.24486 * 54.85161 * 9 8 7 11 11 C 1.50698 * 109.45060 * 178.50021 * 10 9 8 12 12 H 1.07993 * 120.00263 * 120.05962 * 11 10 9 13 13 C 1.37882 * 119.99945 * 300.06419 * 11 10 9 14 14 N 1.31518 * 120.00061 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 120.00194 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.47061 * 89.99809 * 15 13 11 17 17 H 1.48494 * 109.47379 * 209.99915 * 15 13 11 18 18 H 1.48503 * 109.46920 * 330.00423 * 15 13 11 19 19 C 1.53038 * 109.53823 * 298.51512 * 10 9 8 20 20 C 1.46923 * 120.62887 * 186.30714 * 7 5 4 21 21 N 1.36605 * 106.22869 * 359.97438 * 4 3 2 22 22 C 1.46499 * 125.18717 * 179.73394 * 21 4 3 23 23 N 1.28446 * 109.62017 * 0.02562 * 21 4 3 24 24 H 1.08995 * 109.47330 * 89.99803 * 1 2 3 25 25 H 1.09000 * 109.47037 * 209.99625 * 1 2 3 26 26 H 1.09003 * 109.46898 * 329.99873 * 1 2 3 27 27 H 1.08006 * 127.31822 * 0.04586 * 3 2 1 28 28 H 1.09007 * 109.58520 * 246.19866 * 8 7 5 29 29 H 1.08997 * 109.58719 * 6.62177 * 8 7 5 30 30 H 1.09008 * 109.63112 * 294.86337 * 9 8 7 31 31 H 1.08998 * 109.43290 * 174.72408 * 9 8 7 32 32 H 1.09001 * 109.45276 * 58.53372 * 10 9 8 33 33 H 0.96993 * 119.99955 * 180.02562 * 14 13 11 34 34 H 1.09001 * 109.49537 * 301.40819 * 19 10 9 35 35 H 1.08999 * 109.49928 * 181.31595 * 19 10 9 36 36 H 1.09002 * 109.59148 * 353.37842 * 20 7 5 37 37 H 1.09007 * 109.58468 * 113.65593 * 20 7 5 38 38 H 1.08992 * 109.47303 * 84.31478 * 22 21 4 39 39 H 1.09000 * 109.47235 * 204.31528 * 22 21 4 40 40 H 1.09002 * 109.47481 * 324.30953 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3293 1.1290 0.0000 4 6 3.6239 0.6397 -0.0006 5 6 4.8664 1.4283 -0.0014 6 8 5.9093 0.9196 -0.3658 7 7 4.8485 2.7143 0.4017 8 6 3.6279 3.3043 0.9681 9 6 3.9712 3.9212 2.3325 10 6 5.1267 4.9102 2.1626 11 6 5.4429 5.5455 3.4920 12 1 6.4262 5.4328 3.9242 13 6 4.4769 6.2708 4.1567 14 7 3.2792 6.4077 3.6308 15 14 4.8686 7.0578 5.8049 16 1 5.3944 8.4292 5.5861 17 1 3.6337 7.1264 6.6267 18 1 5.8893 6.2434 6.5122 19 6 6.3619 4.1700 1.6446 20 6 6.0474 3.5544 0.2775 21 7 3.5173 -0.7222 -0.0003 22 6 4.6450 -1.6573 -0.0063 23 7 2.2774 -1.0577 -0.0002 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5139 27 1 2.0205 2.1640 0.0007 28 1 3.2514 4.0778 0.2986 29 1 2.8724 2.5291 1.0956 30 1 4.2652 3.1339 3.0268 31 1 3.0988 4.4446 2.7236 32 1 4.8409 5.6833 1.4494 33 1 2.5997 6.9182 4.0982 34 1 6.6334 3.3805 2.3454 35 1 7.1911 4.8706 1.5460 36 1 6.8889 2.9442 -0.0508 37 1 5.8650 4.3463 -0.4490 38 1 4.9949 -1.8111 1.0144 39 1 4.3247 -2.6101 -0.4280 40 1 5.4544 -1.2467 -0.6100 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397181136.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:36 Heat of formation + Delta-G solvation = 31.914608 kcal Electronic energy + Delta-G solvation = -22055.752691 eV Core-core repulsion = 18871.811021 eV Total energy + Delta-G solvation = -3183.941669 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.64692 -40.91483 -38.46318 -35.59457 -34.88489 -33.55396 -32.21685 -31.11813 -30.54110 -28.19585 -26.52987 -25.39358 -24.15467 -23.34669 -22.20804 -20.90712 -19.74933 -18.55980 -17.99857 -17.65750 -17.33253 -16.71421 -16.49578 -16.02193 -15.26558 -15.08198 -14.74056 -14.55001 -14.35894 -14.28752 -14.03887 -13.88731 -13.37573 -13.27064 -13.23985 -13.11698 -12.86233 -12.77301 -12.45480 -12.14677 -11.98982 -11.65026 -11.45592 -11.18103 -11.00510 -10.76511 -10.39141 -10.15991 -9.78542 -9.59748 -8.06855 -6.19394 0.17791 1.30819 1.41879 1.44421 1.51958 1.52708 2.01168 2.12057 2.45104 3.19962 3.28430 3.49688 4.02212 4.07452 4.24270 4.25648 4.30408 4.32799 4.39264 4.46045 4.55500 4.60328 4.62539 4.75095 4.85762 4.93032 4.96107 5.03248 5.13296 5.18342 5.22661 5.41364 5.49955 5.55209 5.65093 5.75907 5.99799 6.12664 6.31574 6.41027 6.89558 6.90121 7.04899 7.48104 8.96696 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021895 B = 0.004858 C = 0.004280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.539873 B = 5762.829826 C = 6541.219826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.017 3.983 3 C -0.195 4.195 4 C -0.049 4.049 5 C 0.585 3.415 6 O -0.577 6.577 7 N -0.583 5.583 8 C 0.084 3.916 9 C -0.113 4.113 10 C 0.044 3.956 11 C -0.536 4.536 12 H 0.046 0.954 13 C 0.020 3.980 14 N -0.910 5.910 15 Si 0.946 3.054 16 H -0.277 1.277 17 H -0.282 1.282 18 H -0.275 1.275 19 C -0.114 4.114 20 C 0.119 3.881 21 N -0.268 5.268 22 C 0.081 3.919 23 N -0.295 5.295 24 H 0.088 0.912 25 H 0.076 0.924 26 H 0.093 0.907 27 H 0.190 0.810 28 H 0.079 0.921 29 H 0.117 0.883 30 H 0.021 0.979 31 H 0.083 0.917 32 H 0.009 0.991 33 H 0.262 0.738 34 H 0.039 0.961 35 H 0.068 0.932 36 H 0.086 0.914 37 H 0.081 0.919 38 H 0.088 0.912 39 H 0.117 0.883 40 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.068 -11.227 -8.050 14.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.140 4.140 3 C -0.223 4.223 4 C -0.178 4.178 5 C 0.373 3.627 6 O -0.459 6.459 7 N -0.314 5.314 8 C -0.037 4.037 9 C -0.152 4.152 10 C 0.026 3.974 11 C -0.574 4.574 12 H 0.064 0.936 13 C -0.179 4.179 14 N -0.549 5.549 15 Si 0.772 3.228 16 H -0.202 1.202 17 H -0.208 1.208 18 H -0.200 1.200 19 C -0.152 4.152 20 C -0.003 4.003 21 N -0.055 5.055 22 C -0.058 4.058 23 N -0.129 5.129 24 H 0.107 0.893 25 H 0.095 0.905 26 H 0.112 0.888 27 H 0.207 0.793 28 H 0.097 0.903 29 H 0.134 0.866 30 H 0.039 0.961 31 H 0.101 0.899 32 H 0.027 0.973 33 H 0.071 0.929 34 H 0.058 0.942 35 H 0.087 0.913 36 H 0.105 0.895 37 H 0.099 0.901 38 H 0.107 0.893 39 H 0.136 0.864 40 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -3.565 -12.662 -8.188 15.495 hybrid contribution 0.497 1.508 1.155 1.964 sum -3.068 -11.154 -7.033 13.538 Atomic orbital electron populations 1.20238 0.83742 1.04332 1.03995 1.22675 0.98773 0.88168 1.04343 1.22824 0.89853 1.01689 1.07965 1.21394 0.95951 0.85848 1.14608 1.17131 0.86302 0.81681 0.77567 1.90696 1.32910 1.70846 1.51450 1.47941 1.14473 1.09741 1.59201 1.22914 0.86231 0.99132 0.95426 1.21863 1.02200 0.97041 0.94048 1.18632 0.91437 0.92729 0.94620 1.21538 0.97689 1.32187 1.05979 0.93590 1.25592 0.95087 0.96675 1.00564 1.69926 1.03836 1.41377 1.39764 0.85744 0.77563 0.78905 0.80538 1.20232 1.20805 1.20033 1.21860 0.99586 0.98798 0.94946 1.21727 0.86988 0.93623 0.97966 1.45772 1.05630 1.04284 1.49854 1.22476 0.85117 0.92963 1.05266 1.73086 0.89632 1.28605 1.21596 0.89339 0.90519 0.88835 0.79323 0.90287 0.86572 0.96061 0.89880 0.97289 0.92866 0.94222 0.91295 0.89546 0.90128 0.89316 0.86409 0.88102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.10 10.45 71.23 0.74 -0.36 16 2 C 0.02 0.43 7.22 43.05 0.31 0.74 16 3 C -0.19 -5.35 8.66 22.66 0.20 -5.15 16 4 C -0.05 -1.56 6.63 40.78 0.27 -1.29 16 5 C 0.59 20.50 7.60 86.59 0.66 21.16 16 6 O -0.58 -21.93 14.38 -4.12 -0.06 -21.99 16 7 N -0.58 -20.32 2.97 -822.24 -2.44 -22.76 16 8 C 0.08 2.88 5.28 86.51 0.46 3.33 16 9 C -0.11 -4.94 5.17 30.82 0.16 -4.78 16 10 C 0.04 2.08 2.06 -11.51 -0.02 2.06 16 11 C -0.54 -28.52 8.56 25.60 0.22 -28.30 16 12 H 0.05 2.46 7.74 -2.91 -0.02 2.43 16 13 C 0.02 1.06 5.30 84.66 0.45 1.51 16 14 N -0.91 -49.27 11.30 21.45 0.24 -49.02 16 15 Si 0.95 42.38 29.54 68.60 2.03 44.40 16 16 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 17 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 18 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 19 C -0.11 -4.55 5.30 30.67 0.16 -4.39 16 20 C 0.12 4.10 6.44 86.36 0.56 4.65 16 21 N -0.27 -7.84 3.75 -356.03 -1.33 -9.18 16 22 C 0.08 1.83 10.90 127.77 1.39 3.22 16 23 N -0.29 -8.44 11.90 -47.50 -0.57 -9.01 16 24 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 25 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.19 4.49 5.73 -2.91 -0.02 4.47 16 28 H 0.08 2.54 8.14 -2.38 -0.02 2.52 16 29 H 0.12 3.56 3.56 -2.39 -0.01 3.55 16 30 H 0.02 0.96 8.14 -2.38 -0.02 0.94 16 31 H 0.08 4.05 6.03 -2.39 -0.01 4.03 16 32 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 33 H 0.26 13.55 8.31 -92.71 -0.77 12.78 16 34 H 0.04 1.66 8.14 -2.39 -0.02 1.65 16 35 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 36 H 0.09 2.91 7.00 -2.39 -0.02 2.89 16 37 H 0.08 2.54 8.14 -2.38 -0.02 2.52 16 38 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.12 1.99 8.14 -2.39 -0.02 1.97 16 40 H 0.10 2.46 6.42 -2.39 -0.02 2.45 16 Total: -1.00 -63.47 319.07 4.46 -59.01 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: 1.04 Total: 16.13 kcal Atomic # 6 Polarization: -13.14 SS G_CDS: 5.55 Total: -7.59 kcal Atomic # 7 Polarization: -85.87 SS G_CDS: -4.10 Total: -89.96 kcal Atomic # 8 Polarization: -21.93 SS G_CDS: -0.06 Total: -21.99 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.40 kcal Total: -63.47 4.46 -59.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397181136.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.924 kcal (2) G-P(sol) polarization free energy of solvation -63.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.009 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds