Wall clock time and date at job start Mon Mar 30 2020 02:14:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39671 * 126.07042 * 2 1 4 4 C 1.38400 * 105.36339 * 179.73532 * 3 2 1 5 5 C 1.47159 * 126.88587 * 179.97438 * 4 3 2 6 6 O 1.21632 * 119.99991 * 154.56266 * 5 4 3 7 7 N 1.34776 * 120.00209 * 334.56480 * 5 4 3 8 8 C 1.46921 * 120.62826 * 359.45913 * 7 5 4 9 9 C 1.53194 * 108.77647 * 233.58546 * 8 7 5 10 10 C 1.53031 * 109.31166 * 305.36713 * 9 8 7 11 11 C 1.53038 * 109.54188 * 61.36343 * 10 9 8 12 12 H 1.09004 * 109.49414 * 58.61969 * 11 10 9 13 13 C 1.50703 * 109.50160 * 178.68105 * 11 10 9 14 14 H 1.08001 * 119.99589 * 5.44167 * 13 11 10 15 15 C 1.37870 * 119.99969 * 185.44763 * 13 11 10 16 16 N 1.31515 * 120.00293 * 9.47727 * 15 13 11 17 17 Si 1.86801 * 119.99816 * 189.47552 * 15 13 11 18 18 H 1.48504 * 109.46946 * 94.98776 * 17 15 13 19 19 H 1.48501 * 109.47338 * 214.98584 * 17 15 13 20 20 H 1.48497 * 109.47240 * 334.98935 * 17 15 13 21 21 C 1.46928 * 120.63342 * 179.18277 * 7 5 4 22 22 N 1.36600 * 106.23216 * 359.97438 * 4 3 2 23 23 C 1.46496 * 125.19225 * 179.97438 * 22 4 3 24 24 N 1.28452 * 109.61630 * 0.02562 * 22 4 3 25 25 H 1.09006 * 109.47301 * 90.00749 * 1 2 3 26 26 H 1.09001 * 109.47002 * 210.00171 * 1 2 3 27 27 H 1.08996 * 109.47239 * 329.99648 * 1 2 3 28 28 H 1.08000 * 127.31487 * 359.71113 * 3 2 1 29 29 H 1.09000 * 109.59007 * 353.37542 * 8 7 5 30 30 H 1.09003 * 109.58763 * 113.65958 * 8 7 5 31 31 H 1.09001 * 109.49594 * 65.32008 * 9 8 7 32 32 H 1.09006 * 109.49691 * 185.41424 * 9 8 7 33 33 H 1.09002 * 109.45941 * 181.38274 * 10 9 8 34 34 H 1.08998 * 109.46531 * 301.34246 * 10 9 8 35 35 H 0.97007 * 120.00324 * 180.02562 * 16 15 13 36 36 H 1.08995 * 109.58360 * 246.20488 * 21 7 5 37 37 H 1.09006 * 109.58268 * 6.62300 * 21 7 5 38 38 H 1.09006 * 109.47138 * 93.40606 * 23 22 4 39 39 H 1.08997 * 109.47572 * 213.40061 * 23 22 4 40 40 H 1.08993 * 109.47643 * 333.40720 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3293 1.1290 0.0000 4 6 3.6239 0.6396 0.0062 5 6 4.8663 1.4283 0.0081 6 8 5.8879 0.9525 0.4657 7 7 4.8722 2.6778 -0.4971 8 6 3.6490 3.2617 -1.0639 9 6 3.9503 3.7571 -2.4819 10 6 5.1433 4.7147 -2.4406 11 6 6.3757 3.9749 -1.9153 12 1 6.5910 3.1231 -2.5605 13 6 7.5575 4.9099 -1.9054 14 1 7.4238 5.9518 -2.1561 15 6 8.8094 4.4351 -1.5766 16 7 9.0107 3.1412 -1.4539 17 14 10.2198 5.6296 -1.3052 18 1 10.3418 5.9303 0.1439 19 1 11.4840 5.0219 -1.7928 20 1 9.9547 6.8860 -2.0509 21 6 6.1004 3.4840 -0.4859 22 7 3.5173 -0.7222 0.0101 23 6 4.6450 -1.6573 0.0165 24 7 2.2774 -1.0578 0.0061 25 1 -0.3634 -0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3633 0.8899 0.5139 28 1 2.0205 2.1639 -0.0043 29 1 2.8655 2.5048 -1.1001 30 1 3.3218 4.0969 -0.4447 31 1 4.1882 2.9070 -3.1214 32 1 3.0788 4.2784 -2.8781 33 1 5.3444 5.0878 -3.4448 34 1 4.9142 5.5521 -1.7814 35 1 9.8915 2.8071 -1.2221 36 1 5.9705 4.3385 0.1782 37 1 6.9350 2.8738 -0.1405 38 1 4.8825 -1.9331 1.0440 39 1 4.3789 -2.5514 -0.5473 40 1 5.5127 -1.1834 -0.4423 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397702652.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:19 Heat of formation + Delta-G solvation = 48.350450 kcal Electronic energy + Delta-G solvation = -22185.943291 eV Core-core repulsion = 19002.714333 eV Total energy + Delta-G solvation = -3183.228958 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.47560 -39.26532 -36.78391 -34.11183 -33.43420 -31.93562 -30.99242 -29.67792 -29.51541 -25.75349 -25.17006 -24.89029 -22.22731 -21.96847 -20.89598 -19.30216 -18.40753 -16.92234 -16.39581 -16.26655 -15.96295 -15.06411 -14.60934 -14.41838 -14.11843 -13.60164 -13.49270 -13.38357 -13.05608 -12.77015 -12.59970 -12.39609 -12.33296 -12.27862 -12.11408 -11.85411 -11.02431 -10.98529 -10.59107 -10.57991 -10.34800 -10.18679 -9.93009 -9.59792 -9.12879 -9.08346 -8.88566 -8.68931 -8.43625 -7.86976 -6.06550 -4.11032 1.54179 2.50839 2.61276 3.28660 3.37043 3.38816 3.48838 3.64870 4.40646 4.51521 4.68772 5.06304 5.20531 5.25584 5.26410 5.30409 5.41718 5.50137 5.57233 5.60531 5.65451 5.72881 5.78609 5.94092 6.00021 6.18208 6.28740 6.52034 6.58280 6.59871 6.79980 6.84372 6.91490 7.02636 7.10045 7.53460 7.80022 7.91577 8.03010 8.17572 8.33074 8.64293 8.93494 9.53682 11.01453 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.027266 B = 0.004952 C = 0.004365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.665842 B = 5652.802522 C = 6413.405695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.019 3.981 3 C -0.209 4.209 4 C -0.013 4.013 5 C 0.575 3.425 6 O -0.538 6.538 7 N -0.584 5.584 8 C 0.075 3.925 9 C -0.133 4.133 10 C -0.111 4.111 11 C 0.039 3.961 12 H 0.037 0.963 13 C -0.523 4.523 14 H 0.059 0.941 15 C 0.066 3.934 16 N -0.878 5.878 17 Si 0.888 3.112 18 H -0.280 1.280 19 H -0.287 1.287 20 H -0.273 1.273 21 C 0.118 3.882 22 N -0.261 5.261 23 C 0.091 3.909 24 N -0.288 5.288 25 H 0.072 0.928 26 H 0.069 0.931 27 H 0.075 0.925 28 H 0.172 0.828 29 H 0.104 0.896 30 H 0.065 0.935 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.052 0.948 34 H 0.049 0.951 35 H 0.263 0.737 36 H 0.049 0.951 37 H 0.106 0.894 38 H 0.085 0.915 39 H 0.090 0.910 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.944 -4.627 1.678 15.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.138 4.138 3 C -0.237 4.237 4 C -0.143 4.143 5 C 0.360 3.640 6 O -0.416 6.416 7 N -0.315 5.315 8 C -0.048 4.048 9 C -0.171 4.171 10 C -0.149 4.149 11 C 0.020 3.980 12 H 0.055 0.945 13 C -0.561 4.561 14 H 0.077 0.923 15 C -0.138 4.138 16 N -0.515 5.515 17 Si 0.716 3.284 18 H -0.206 1.206 19 H -0.213 1.213 20 H -0.198 1.198 21 C -0.002 4.002 22 N -0.048 5.048 23 C -0.049 4.049 24 N -0.121 5.121 25 H 0.090 0.910 26 H 0.088 0.912 27 H 0.093 0.907 28 H 0.189 0.811 29 H 0.121 0.879 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.068 0.932 37 H 0.124 0.876 38 H 0.103 0.897 39 H 0.109 0.891 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -14.110 -6.280 1.962 15.569 hybrid contribution 0.962 1.486 0.175 1.779 sum -13.148 -4.794 2.136 14.157 Atomic orbital electron populations 1.20048 0.86625 1.02944 1.02591 1.21994 0.96946 0.88998 1.05839 1.22372 0.90394 1.00269 1.10712 1.21757 0.96445 0.85109 1.10960 1.17006 0.85574 0.81931 0.79485 1.90815 1.33274 1.70290 1.47243 1.48214 1.12983 1.13335 1.56994 1.22571 0.88003 0.99186 0.95032 1.21938 0.99259 1.00138 0.95762 1.21638 0.95174 0.97395 1.00687 1.19053 0.91570 0.95995 0.91362 0.94529 1.21053 0.91841 0.95408 1.47847 0.92267 1.25036 0.98681 0.94960 0.95084 1.69980 1.23050 1.11827 1.46668 0.86637 0.81879 0.81347 0.78531 1.20593 1.21260 1.19828 1.22398 0.83823 0.93094 1.00850 1.45502 1.05009 1.04467 1.49778 1.22239 0.85735 0.92349 1.04616 1.73060 0.89543 1.27939 1.21596 0.90956 0.91246 0.90662 0.81126 0.87898 0.91663 0.92203 0.92025 0.92873 0.93178 0.92721 0.93239 0.87599 0.89664 0.89138 0.87595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.58 10.45 36.00 0.38 -0.20 16 2 C 0.02 0.26 7.22 -82.47 -0.60 -0.34 16 3 C -0.21 -2.95 8.65 -38.99 -0.34 -3.29 16 4 C -0.01 -0.23 6.59 -82.06 -0.54 -0.77 16 5 C 0.57 11.67 7.48 -12.64 -0.09 11.57 16 6 O -0.54 -12.66 14.78 5.25 0.08 -12.58 16 7 N -0.58 -11.54 2.97 -173.87 -0.52 -12.06 16 8 C 0.07 1.15 5.46 -3.71 -0.02 1.13 16 9 C -0.13 -2.12 6.08 -26.61 -0.16 -2.28 16 10 C -0.11 -2.16 5.11 -26.70 -0.14 -2.30 16 11 C 0.04 0.95 2.12 -91.43 -0.19 0.76 16 12 H 0.04 1.00 8.09 -51.93 -0.42 0.58 16 13 C -0.52 -13.93 8.48 -34.44 -0.29 -14.22 16 14 H 0.06 1.55 7.77 -52.49 -0.41 1.14 16 15 C 0.07 1.80 5.24 -17.82 -0.09 1.71 16 16 N -0.88 -25.34 12.23 55.43 0.68 -24.66 16 17 Si 0.89 20.98 29.55 -169.99 -5.02 15.96 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 19 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 21 C 0.12 2.77 5.51 -3.49 -0.02 2.75 16 22 N -0.26 -4.20 3.75 -63.89 -0.24 -4.44 16 23 C 0.09 1.22 10.78 59.84 0.65 1.86 16 24 N -0.29 -4.43 11.90 33.64 0.40 -4.03 16 25 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.17 1.97 5.87 -52.49 -0.31 1.66 16 29 H 0.10 1.39 3.34 -51.93 -0.17 1.21 16 30 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 31 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 32 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 34 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 35 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 36 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 37 H 0.11 2.89 5.95 -51.93 -0.31 2.58 16 38 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 40 H 0.11 1.59 6.83 -51.93 -0.35 1.24 16 LS Contribution 321.37 15.07 4.84 4.84 Total: -1.00 -31.85 321.37 -7.00 -38.85 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -5.76 Total: 1.73 kcal Atomic # 6 Polarization: -2.15 SS G_CDS: -1.46 Total: -3.62 kcal Atomic # 7 Polarization: -45.51 SS G_CDS: 0.32 Total: -45.19 kcal Atomic # 8 Polarization: -12.66 SS G_CDS: 0.08 Total: -12.58 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -31.85 -7.00 -38.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397702652.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.205 kcal (2) G-P(sol) polarization free energy of solvation -31.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds