Wall clock time and date at job start Mon Mar 30 2020 02:14:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39671 * 126.07042 * 2 1 4 4 C 1.38400 * 105.36339 * 179.73532 * 3 2 1 5 5 C 1.47159 * 126.88587 * 179.97438 * 4 3 2 6 6 O 1.21632 * 119.99991 * 154.56266 * 5 4 3 7 7 N 1.34776 * 120.00209 * 334.56480 * 5 4 3 8 8 C 1.46921 * 120.62826 * 359.45913 * 7 5 4 9 9 C 1.53194 * 108.77647 * 233.58546 * 8 7 5 10 10 C 1.53031 * 109.31166 * 305.36713 * 9 8 7 11 11 C 1.53038 * 109.54188 * 61.36343 * 10 9 8 12 12 H 1.09004 * 109.49414 * 58.61969 * 11 10 9 13 13 C 1.50703 * 109.50160 * 178.68105 * 11 10 9 14 14 H 1.08001 * 119.99589 * 5.44167 * 13 11 10 15 15 C 1.37870 * 119.99969 * 185.44763 * 13 11 10 16 16 N 1.31515 * 120.00293 * 9.47727 * 15 13 11 17 17 Si 1.86801 * 119.99816 * 189.47552 * 15 13 11 18 18 H 1.48504 * 109.46946 * 94.98776 * 17 15 13 19 19 H 1.48501 * 109.47338 * 214.98584 * 17 15 13 20 20 H 1.48497 * 109.47240 * 334.98935 * 17 15 13 21 21 C 1.46928 * 120.63342 * 179.18277 * 7 5 4 22 22 N 1.36600 * 106.23216 * 359.97438 * 4 3 2 23 23 C 1.46496 * 125.19225 * 179.97438 * 22 4 3 24 24 N 1.28452 * 109.61630 * 0.02562 * 22 4 3 25 25 H 1.09006 * 109.47301 * 90.00749 * 1 2 3 26 26 H 1.09001 * 109.47002 * 210.00171 * 1 2 3 27 27 H 1.08996 * 109.47239 * 329.99648 * 1 2 3 28 28 H 1.08000 * 127.31487 * 359.71113 * 3 2 1 29 29 H 1.09000 * 109.59007 * 353.37542 * 8 7 5 30 30 H 1.09003 * 109.58763 * 113.65958 * 8 7 5 31 31 H 1.09001 * 109.49594 * 65.32008 * 9 8 7 32 32 H 1.09006 * 109.49691 * 185.41424 * 9 8 7 33 33 H 1.09002 * 109.45941 * 181.38274 * 10 9 8 34 34 H 1.08998 * 109.46531 * 301.34246 * 10 9 8 35 35 H 0.97007 * 120.00324 * 180.02562 * 16 15 13 36 36 H 1.08995 * 109.58360 * 246.20488 * 21 7 5 37 37 H 1.09006 * 109.58268 * 6.62300 * 21 7 5 38 38 H 1.09006 * 109.47138 * 93.40606 * 23 22 4 39 39 H 1.08997 * 109.47572 * 213.40061 * 23 22 4 40 40 H 1.08993 * 109.47643 * 333.40720 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3293 1.1290 0.0000 4 6 3.6239 0.6396 0.0062 5 6 4.8663 1.4283 0.0081 6 8 5.8879 0.9525 0.4657 7 7 4.8722 2.6778 -0.4971 8 6 3.6490 3.2617 -1.0639 9 6 3.9503 3.7571 -2.4819 10 6 5.1433 4.7147 -2.4406 11 6 6.3757 3.9749 -1.9153 12 1 6.5910 3.1231 -2.5605 13 6 7.5575 4.9099 -1.9054 14 1 7.4238 5.9518 -2.1561 15 6 8.8094 4.4351 -1.5766 16 7 9.0107 3.1412 -1.4539 17 14 10.2198 5.6296 -1.3052 18 1 10.3418 5.9303 0.1439 19 1 11.4840 5.0219 -1.7928 20 1 9.9547 6.8860 -2.0509 21 6 6.1004 3.4840 -0.4859 22 7 3.5173 -0.7222 0.0101 23 6 4.6450 -1.6573 0.0165 24 7 2.2774 -1.0578 0.0061 25 1 -0.3634 -0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3633 0.8899 0.5139 28 1 2.0205 2.1639 -0.0043 29 1 2.8655 2.5048 -1.1001 30 1 3.3218 4.0969 -0.4447 31 1 4.1882 2.9070 -3.1214 32 1 3.0788 4.2784 -2.8781 33 1 5.3444 5.0878 -3.4448 34 1 4.9142 5.5521 -1.7814 35 1 9.8915 2.8071 -1.2221 36 1 5.9705 4.3385 0.1782 37 1 6.9350 2.8738 -0.1405 38 1 4.8825 -1.9331 1.0440 39 1 4.3789 -2.5514 -0.5473 40 1 5.5127 -1.1834 -0.4423 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397702652.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:18 Heat of formation + Delta-G solvation = 27.769065 kcal Electronic energy + Delta-G solvation = -22186.835767 eV Core-core repulsion = 19002.714333 eV Total energy + Delta-G solvation = -3184.121434 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.63972 -40.82856 -38.40756 -35.56235 -34.90022 -33.62752 -32.40541 -31.14641 -30.54531 -27.09719 -27.02139 -26.15685 -23.63993 -23.53041 -22.19174 -20.87430 -19.72411 -18.61624 -17.92531 -17.69155 -17.30150 -16.66756 -16.38653 -15.93391 -15.50316 -15.04837 -14.74119 -14.51706 -14.37770 -14.29809 -14.02927 -13.78533 -13.58821 -13.32716 -13.17676 -13.11023 -12.87848 -12.70171 -12.35023 -12.22889 -11.90864 -11.67528 -11.44474 -11.29725 -10.94524 -10.80286 -10.53055 -10.14136 -9.79696 -9.48958 -8.16418 -6.27994 0.24772 1.30803 1.40450 1.41791 1.51917 1.55601 2.04805 2.18719 2.41799 3.15158 3.35800 3.49314 4.03780 4.05355 4.15894 4.21324 4.25140 4.34778 4.37630 4.53546 4.58235 4.62404 4.73772 4.80190 4.82724 4.97299 5.05454 5.07608 5.16286 5.17705 5.26509 5.30366 5.50318 5.55328 5.60612 5.76920 5.85417 5.91089 6.30681 6.45975 6.85129 7.01004 7.11289 7.41180 8.91014 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.027266 B = 0.004952 C = 0.004365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.665842 B = 5652.802522 C = 6413.405695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.021 3.979 3 C -0.191 4.191 4 C -0.045 4.045 5 C 0.569 3.431 6 O -0.586 6.586 7 N -0.587 5.587 8 C 0.071 3.929 9 C -0.126 4.126 10 C -0.106 4.106 11 C 0.038 3.962 12 H -0.011 1.011 13 C -0.535 4.535 14 H 0.064 0.936 15 C 0.013 3.987 16 N -0.917 5.917 17 Si 0.953 3.047 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.260 1.260 21 C 0.132 3.868 22 N -0.273 5.273 23 C 0.089 3.911 24 N -0.299 5.299 25 H 0.089 0.911 26 H 0.073 0.927 27 H 0.100 0.900 28 H 0.203 0.797 29 H 0.128 0.872 30 H 0.095 0.905 31 H 0.042 0.958 32 H 0.109 0.891 33 H 0.050 0.950 34 H 0.063 0.937 35 H 0.260 0.740 36 H 0.054 0.946 37 H 0.058 0.942 38 H 0.092 0.908 39 H 0.117 0.883 40 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.296 -3.243 1.601 18.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.136 4.136 3 C -0.219 4.219 4 C -0.174 4.174 5 C 0.356 3.644 6 O -0.468 6.468 7 N -0.318 5.318 8 C -0.050 4.050 9 C -0.164 4.164 10 C -0.143 4.143 11 C 0.019 3.981 12 H 0.007 0.993 13 C -0.574 4.574 14 H 0.082 0.918 15 C -0.186 4.186 16 N -0.555 5.555 17 Si 0.778 3.222 18 H -0.202 1.202 19 H -0.214 1.214 20 H -0.184 1.184 21 C 0.010 3.990 22 N -0.059 5.059 23 C -0.050 4.050 24 N -0.133 5.133 25 H 0.107 0.893 26 H 0.092 0.908 27 H 0.119 0.881 28 H 0.219 0.781 29 H 0.146 0.854 30 H 0.113 0.887 31 H 0.061 0.939 32 H 0.127 0.873 33 H 0.069 0.931 34 H 0.082 0.918 35 H 0.068 0.932 36 H 0.072 0.928 37 H 0.076 0.924 38 H 0.111 0.889 39 H 0.135 0.865 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -17.505 -4.871 1.864 18.266 hybrid contribution 1.936 1.023 0.175 2.197 sum -15.569 -3.848 2.040 16.167 Atomic orbital electron populations 1.20256 0.83206 1.04481 1.04134 1.22773 0.98873 0.88010 1.03916 1.22761 0.88831 1.01938 1.08387 1.21462 0.95953 0.85756 1.14204 1.17483 0.86250 0.82059 0.78578 1.90778 1.35417 1.71279 1.49314 1.48203 1.13272 1.13178 1.57099 1.22956 0.86476 1.00689 0.94854 1.21913 0.99306 0.99042 0.96098 1.21534 0.94378 0.98008 1.00426 1.18977 0.93529 0.94469 0.91140 0.99261 1.21499 0.92926 0.95959 1.46995 0.91757 1.25861 1.01509 0.96312 0.94962 1.70148 1.23329 1.13892 1.48149 0.85616 0.78512 0.79522 0.78504 1.20231 1.21440 1.18392 1.21838 0.84368 0.92660 1.00091 1.45704 1.05655 1.04326 1.50257 1.22284 0.84744 0.92691 1.05330 1.73089 0.89323 1.28976 1.21896 0.89273 0.90767 0.88144 0.78080 0.85427 0.88733 0.93904 0.87307 0.93084 0.91787 0.93156 0.92775 0.92372 0.88933 0.86460 0.90145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.85 10.45 71.23 0.74 -0.10 16 2 C 0.02 0.50 7.22 43.05 0.31 0.81 16 3 C -0.19 -4.78 8.65 22.65 0.20 -4.59 16 4 C -0.05 -1.52 6.59 40.78 0.27 -1.25 16 5 C 0.57 23.81 7.48 86.59 0.65 24.46 16 6 O -0.59 -29.54 14.78 -4.13 -0.06 -29.60 16 7 N -0.59 -23.33 2.97 -822.26 -2.44 -25.77 16 8 C 0.07 1.96 5.46 86.36 0.47 2.43 16 9 C -0.13 -3.65 6.08 30.67 0.19 -3.46 16 10 C -0.11 -3.97 5.11 30.62 0.16 -3.82 16 11 C 0.04 1.90 2.12 -11.32 -0.02 1.87 16 12 H -0.01 -0.64 8.09 -2.38 -0.02 -0.66 16 13 C -0.54 -29.11 8.48 25.60 0.22 -28.90 16 14 H 0.06 3.35 7.77 -2.91 -0.02 3.33 16 15 C 0.01 0.75 5.24 84.65 0.44 1.19 16 16 N -0.92 -55.75 12.23 21.44 0.26 -55.48 16 17 Si 0.95 43.92 29.55 68.60 2.03 45.94 16 18 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 19 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 20 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 21 C 0.13 6.42 5.51 86.50 0.48 6.90 16 22 N -0.27 -8.68 3.75 -356.04 -1.33 -10.01 16 23 C 0.09 2.48 10.78 127.77 1.38 3.86 16 24 N -0.30 -8.65 11.90 -47.50 -0.57 -9.21 16 25 H 0.09 0.97 8.14 -2.38 -0.02 0.95 16 26 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.20 3.61 5.87 -2.91 -0.02 3.59 16 29 H 0.13 2.93 3.34 -2.39 -0.01 2.92 16 30 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 31 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.11 2.23 8.14 -2.38 -0.02 2.21 16 33 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 35 H 0.26 15.18 8.31 -92.70 -0.77 14.41 16 36 H 0.05 2.51 8.14 -2.39 -0.02 2.49 16 37 H 0.06 3.39 5.95 -2.38 -0.01 3.38 16 38 H 0.09 2.36 8.14 -2.38 -0.02 2.34 16 39 H 0.12 2.50 8.14 -2.39 -0.02 2.48 16 40 H 0.08 2.64 6.83 -2.39 -0.02 2.62 16 Total: -1.00 -74.60 321.37 4.40 -70.20 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: 1.04 Total: 14.52 kcal Atomic # 6 Polarization: -6.07 SS G_CDS: 5.47 Total: -0.59 kcal Atomic # 7 Polarization: -96.40 SS G_CDS: -4.08 Total: -100.48 kcal Atomic # 8 Polarization: -29.54 SS G_CDS: -0.06 Total: -29.60 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.94 kcal Total: -74.60 4.40 -70.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397702652.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.973 kcal (2) G-P(sol) polarization free energy of solvation -74.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds