Wall clock time and date at job start Mon Mar 30 2020 02:09:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30445 * 125.98559 * 2 1 4 4 N 1.39933 * 108.89901 * 180.02562 * 3 2 1 5 5 C 1.46500 * 125.75726 * 179.97438 * 4 3 2 6 6 C 1.34264 * 108.49082 * 359.75396 * 4 3 2 7 7 C 1.50702 * 126.29644 * 180.24247 * 6 4 3 8 8 C 1.38047 * 107.41425 * 0.39325 * 6 4 3 9 9 C 1.47428 * 126.41510 * 179.87290 * 8 6 4 10 10 O 1.21599 * 120.00001 * 269.71152 * 9 8 6 11 11 N 1.34782 * 120.00087 * 89.71455 * 9 8 6 12 12 C 1.46495 * 120.00258 * 180.02562 * 11 9 8 13 13 C 1.52992 * 109.47269 * 184.79147 * 12 11 9 14 14 C 1.50694 * 115.55114 * 294.81128 * 13 12 11 15 15 H 1.08008 * 119.99906 * 95.20873 * 14 13 12 16 16 C 1.37875 * 120.00314 * 274.92789 * 14 13 12 17 17 N 1.31509 * 119.99913 * 355.42420 * 16 14 13 18 18 Si 1.86807 * 120.00040 * 175.41703 * 16 14 13 19 19 H 1.48494 * 109.47052 * 60.00642 * 18 16 14 20 20 H 1.48500 * 109.47055 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47106 * 300.00083 * 18 16 14 22 22 C 1.53003 * 117.49834 * 80.48431 * 13 12 11 23 23 C 1.53006 * 117.49908 * 149.14426 * 13 12 11 24 24 H 1.09002 * 109.47313 * 269.95298 * 1 2 3 25 25 H 1.09002 * 109.46965 * 29.95912 * 1 2 3 26 26 H 1.09001 * 109.46848 * 149.95615 * 1 2 3 27 27 H 1.09000 * 109.46830 * 89.97799 * 5 4 3 28 28 H 1.09001 * 109.47243 * 209.97378 * 5 4 3 29 29 H 1.08994 * 109.47134 * 329.97543 * 5 4 3 30 30 H 1.08996 * 109.46882 * 270.18207 * 7 6 4 31 31 H 1.09000 * 109.46398 * 30.17689 * 7 6 4 32 32 H 1.08998 * 109.47334 * 150.17766 * 7 6 4 33 33 H 0.96999 * 119.99637 * 359.97438 * 11 9 8 34 34 H 1.09001 * 109.47395 * 64.78624 * 12 11 9 35 35 H 1.09007 * 109.47080 * 304.78945 * 12 11 9 36 36 H 0.97001 * 119.99960 * 184.99387 * 17 16 14 37 37 H 1.09003 * 117.50034 * 214.99852 * 22 13 12 38 38 H 1.09002 * 117.49971 * 0.02686 * 22 13 12 39 39 H 1.08996 * 117.49810 * 359.97342 * 23 13 12 40 40 H 1.08995 * 117.50078 * 144.97442 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2735 1.0555 0.0000 4 7 3.6111 0.6444 -0.0006 5 6 4.7787 1.5292 -0.0013 6 6 3.6440 -0.6979 0.0045 7 6 4.8801 -1.5599 0.0110 8 6 2.3373 -1.1432 -0.0007 9 6 1.8916 -2.5485 -0.0005 10 8 1.7076 -3.1281 -1.0535 11 7 1.6882 -3.1908 1.1668 12 6 1.2459 -4.5874 1.1671 13 6 0.9771 -5.0370 2.6045 14 6 2.1825 -5.0817 3.5077 15 1 2.4123 -4.2394 4.1436 16 6 2.9887 -6.2000 3.5267 17 7 2.6569 -7.2618 2.8253 18 14 4.5524 -6.2069 4.5487 19 1 4.2113 -5.9864 5.9770 20 1 5.2358 -7.5168 4.3990 21 1 5.4536 -5.1228 4.0818 22 6 -0.3607 -4.6383 3.2309 23 6 -0.1091 -6.0922 2.8233 24 1 -0.3634 -0.0008 1.0277 25 1 -0.3633 0.8904 -0.5132 26 1 -0.3633 -0.8896 -0.5145 27 1 5.0685 1.7491 1.0262 28 1 5.6057 1.0391 -0.5151 29 1 4.5306 2.4577 -0.5155 30 1 5.1826 -1.7689 -1.0151 31 1 5.6849 -1.0370 0.5277 32 1 4.6668 -2.4971 0.5250 33 1 1.8354 -2.7285 2.0068 34 1 2.0225 -5.2146 0.7294 35 1 0.3315 -4.6790 0.5807 36 1 3.1840 -8.0731 2.8948 37 1 -0.3690 -4.4084 4.2964 38 1 -1.0495 -4.0561 2.6187 39 1 -0.6324 -6.4658 1.9431 40 1 0.0484 -6.8189 3.6202 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404160387.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:29 Heat of formation + Delta-G solvation = 51.839986 kcal Electronic energy + Delta-G solvation = -21704.517592 eV Core-core repulsion = 18521.439952 eV Total energy + Delta-G solvation = -3183.077640 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.31791 -38.58372 -36.57974 -34.22697 -33.16323 -32.00704 -31.87516 -29.56210 -27.78413 -26.23767 -25.61769 -24.87342 -21.63349 -21.05150 -19.52613 -19.43244 -19.03057 -17.13407 -16.18257 -15.94114 -15.52949 -14.87680 -14.69128 -14.32823 -13.86999 -13.78536 -13.51105 -13.21579 -13.12760 -13.01731 -12.62475 -12.57496 -12.31745 -11.96573 -11.90538 -11.68302 -11.55064 -10.98105 -10.96204 -10.64654 -10.54885 -10.21906 -9.62826 -9.30320 -9.09085 -9.02650 -8.48637 -8.34614 -8.22732 -8.04777 -6.07282 -4.16864 1.78692 2.39756 2.62187 3.20639 3.24945 3.31404 3.32297 4.06294 4.34305 4.47462 4.58245 4.89302 4.96228 5.08948 5.20169 5.20498 5.34279 5.36929 5.48034 5.63898 5.69569 5.86835 5.89461 5.95106 6.06435 6.11669 6.36637 6.50263 6.59687 6.63720 6.73603 6.91058 6.94707 7.14120 7.33363 7.41633 7.55642 7.72102 7.81202 8.34934 8.38583 8.84105 8.96276 9.49852 10.99865 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017274 B = 0.005557 C = 0.004682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.581116 B = 5037.838268 C = 5978.974420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.112 3.888 3 N -0.305 5.305 4 N -0.368 5.368 5 C 0.100 3.900 6 C 0.125 3.875 7 C -0.098 4.098 8 C -0.274 4.274 9 C 0.586 3.414 10 O -0.554 6.554 11 N -0.694 5.694 12 C 0.163 3.837 13 C 0.024 3.976 14 C -0.499 4.499 15 H 0.059 0.941 16 C 0.074 3.926 17 N -0.875 5.875 18 Si 0.889 3.111 19 H -0.278 1.278 20 H -0.287 1.287 21 H -0.276 1.276 22 C -0.210 4.210 23 C -0.142 4.142 24 H 0.081 0.919 25 H 0.074 0.926 26 H 0.080 0.920 27 H 0.076 0.924 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.074 0.926 32 H 0.094 0.906 33 H 0.401 0.599 34 H 0.067 0.933 35 H 0.041 0.959 36 H 0.262 0.738 37 H 0.077 0.923 38 H 0.065 0.935 39 H 0.063 0.937 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.685 13.824 -3.597 14.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.054 4.054 3 N -0.127 5.127 4 N -0.148 5.148 5 C -0.041 4.041 6 C -0.005 4.005 7 C -0.157 4.157 8 C -0.289 4.289 9 C 0.370 3.630 10 O -0.433 6.433 11 N -0.342 5.342 12 C 0.040 3.960 13 C 0.023 3.977 14 C -0.536 4.536 15 H 0.077 0.923 16 C -0.130 4.130 17 N -0.510 5.510 18 Si 0.717 3.283 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.202 1.202 22 C -0.248 4.248 23 C -0.180 4.180 24 H 0.100 0.900 25 H 0.093 0.907 26 H 0.099 0.901 27 H 0.094 0.906 28 H 0.106 0.894 29 H 0.108 0.892 30 H 0.103 0.897 31 H 0.093 0.907 32 H 0.113 0.887 33 H 0.235 0.765 34 H 0.086 0.914 35 H 0.059 0.941 36 H 0.072 0.928 37 H 0.095 0.905 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 2.812 14.574 -4.440 15.492 hybrid contribution 1.070 -0.730 1.019 1.648 sum 3.882 13.844 -3.421 14.779 Atomic orbital electron populations 1.20243 0.86236 1.03575 1.03381 1.22279 0.96764 0.89049 0.97339 1.77030 0.85945 1.22490 1.27187 1.48061 1.05720 1.04031 1.56986 1.21861 0.84281 0.94450 1.03488 1.21350 0.96332 0.84395 0.98446 1.20570 0.92107 0.99158 1.03843 1.20034 0.91960 0.94804 1.22058 1.17278 0.77420 0.84177 0.84105 1.90732 1.52800 1.68006 1.31740 1.46022 1.66321 1.14160 1.07691 1.21015 0.97917 0.79658 0.97443 1.19038 0.88427 0.98815 0.91424 1.20308 1.08011 1.02102 1.23223 0.92319 1.24973 0.97428 0.95657 0.94947 1.69977 1.39368 1.02066 1.39637 0.86718 0.83718 0.77274 0.80617 1.20320 1.21274 1.20202 1.23014 1.02454 0.99388 0.99904 1.22463 1.03253 0.90870 1.01433 0.90012 0.90697 0.90116 0.90581 0.89439 0.89192 0.89668 0.90732 0.88676 0.76450 0.91443 0.94099 0.92826 0.90460 0.91658 0.91816 0.89573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.98 10.28 36.01 0.37 -0.61 16 2 C 0.11 1.79 7.26 -82.02 -0.60 1.19 16 3 N -0.30 -4.73 12.50 33.90 0.42 -4.31 16 4 N -0.37 -4.96 3.98 -63.34 -0.25 -5.21 16 5 C 0.10 0.82 11.06 59.85 0.66 1.48 16 6 C 0.12 1.85 7.01 -81.60 -0.57 1.28 16 7 C -0.10 -1.20 9.70 36.01 0.35 -0.85 16 8 C -0.27 -4.73 5.88 -105.07 -0.62 -5.34 16 9 C 0.59 11.64 6.98 -12.52 -0.09 11.56 16 10 O -0.55 -12.89 17.10 5.28 0.09 -12.80 16 11 N -0.69 -13.79 5.48 -61.39 -0.34 -14.12 16 12 C 0.16 3.67 5.50 -4.05 -0.02 3.64 16 13 C 0.02 0.55 1.47 -155.66 -0.23 0.32 16 14 C -0.50 -12.66 8.59 -34.44 -0.30 -12.96 16 15 H 0.06 1.47 7.82 -52.48 -0.41 1.06 16 16 C 0.07 1.93 5.43 -17.82 -0.10 1.83 16 17 N -0.87 -23.90 12.65 55.43 0.70 -23.20 16 18 Si 0.89 20.21 29.54 -169.99 -5.02 15.18 16 19 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 20 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 22 C -0.21 -4.37 9.96 -26.69 -0.27 -4.64 16 23 C -0.14 -3.24 9.14 -26.69 -0.24 -3.48 16 24 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 25 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.08 1.10 8.01 -51.93 -0.42 0.68 16 27 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.09 0.52 7.64 -51.93 -0.40 0.12 16 29 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.07 0.68 7.71 -51.93 -0.40 0.28 16 32 H 0.09 1.34 7.96 -51.93 -0.41 0.93 16 33 H 0.40 7.58 8.31 -40.82 -0.34 7.24 16 34 H 0.07 1.72 8.14 -51.93 -0.42 1.29 16 35 H 0.04 0.91 8.09 -51.92 -0.42 0.49 16 36 H 0.26 6.91 8.32 -40.82 -0.34 6.57 16 37 H 0.08 1.59 8.14 -51.93 -0.42 1.16 16 38 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 39 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 40 H 0.09 2.10 8.14 -51.93 -0.42 1.68 16 LS Contribution 346.10 15.07 5.22 5.22 Total: -1.00 -31.58 346.10 -6.98 -38.57 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: -6.16 Total: 7.24 kcal Atomic # 6 Polarization: -4.91 SS G_CDS: -1.65 Total: -6.56 kcal Atomic # 7 Polarization: -47.38 SS G_CDS: 0.54 Total: -46.85 kcal Atomic # 8 Polarization: -12.89 SS G_CDS: 0.09 Total: -12.80 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.18 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.58 -6.98 -38.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404160387.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.407 kcal (2) G-P(sol) polarization free energy of solvation -31.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.567 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds