Wall clock time and date at job start Mon Mar 30 2020 02:09:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30445 * 125.98559 * 2 1 4 4 N 1.39933 * 108.89901 * 180.02562 * 3 2 1 5 5 C 1.46500 * 125.75726 * 179.97438 * 4 3 2 6 6 C 1.34264 * 108.49082 * 359.75396 * 4 3 2 7 7 C 1.50702 * 126.29644 * 180.24247 * 6 4 3 8 8 C 1.38047 * 107.41425 * 0.39325 * 6 4 3 9 9 C 1.47428 * 126.41510 * 179.87290 * 8 6 4 10 10 O 1.21599 * 120.00001 * 269.71152 * 9 8 6 11 11 N 1.34782 * 120.00087 * 89.71455 * 9 8 6 12 12 C 1.46495 * 120.00258 * 180.02562 * 11 9 8 13 13 C 1.52992 * 109.47269 * 184.79147 * 12 11 9 14 14 C 1.50694 * 115.55114 * 294.81128 * 13 12 11 15 15 H 1.08008 * 119.99906 * 95.20873 * 14 13 12 16 16 C 1.37875 * 120.00314 * 274.92789 * 14 13 12 17 17 N 1.31509 * 119.99913 * 355.42420 * 16 14 13 18 18 Si 1.86807 * 120.00040 * 175.41703 * 16 14 13 19 19 H 1.48494 * 109.47052 * 60.00642 * 18 16 14 20 20 H 1.48500 * 109.47055 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47106 * 300.00083 * 18 16 14 22 22 C 1.53003 * 117.49834 * 80.48431 * 13 12 11 23 23 C 1.53006 * 117.49908 * 149.14426 * 13 12 11 24 24 H 1.09002 * 109.47313 * 269.95298 * 1 2 3 25 25 H 1.09002 * 109.46965 * 29.95912 * 1 2 3 26 26 H 1.09001 * 109.46848 * 149.95615 * 1 2 3 27 27 H 1.09000 * 109.46830 * 89.97799 * 5 4 3 28 28 H 1.09001 * 109.47243 * 209.97378 * 5 4 3 29 29 H 1.08994 * 109.47134 * 329.97543 * 5 4 3 30 30 H 1.08996 * 109.46882 * 270.18207 * 7 6 4 31 31 H 1.09000 * 109.46398 * 30.17689 * 7 6 4 32 32 H 1.08998 * 109.47334 * 150.17766 * 7 6 4 33 33 H 0.96999 * 119.99637 * 359.97438 * 11 9 8 34 34 H 1.09001 * 109.47395 * 64.78624 * 12 11 9 35 35 H 1.09007 * 109.47080 * 304.78945 * 12 11 9 36 36 H 0.97001 * 119.99960 * 184.99387 * 17 16 14 37 37 H 1.09003 * 117.50034 * 214.99852 * 22 13 12 38 38 H 1.09002 * 117.49971 * 0.02686 * 22 13 12 39 39 H 1.08996 * 117.49810 * 359.97342 * 23 13 12 40 40 H 1.08995 * 117.50078 * 144.97442 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2735 1.0555 0.0000 4 7 3.6111 0.6444 -0.0006 5 6 4.7787 1.5292 -0.0013 6 6 3.6440 -0.6979 0.0045 7 6 4.8801 -1.5599 0.0110 8 6 2.3373 -1.1432 -0.0007 9 6 1.8916 -2.5485 -0.0005 10 8 1.7076 -3.1281 -1.0535 11 7 1.6882 -3.1908 1.1668 12 6 1.2459 -4.5874 1.1671 13 6 0.9771 -5.0370 2.6045 14 6 2.1825 -5.0817 3.5077 15 1 2.4123 -4.2394 4.1436 16 6 2.9887 -6.2000 3.5267 17 7 2.6569 -7.2618 2.8253 18 14 4.5524 -6.2069 4.5487 19 1 4.2113 -5.9864 5.9770 20 1 5.2358 -7.5168 4.3990 21 1 5.4536 -5.1228 4.0818 22 6 -0.3607 -4.6383 3.2309 23 6 -0.1091 -6.0922 2.8233 24 1 -0.3634 -0.0008 1.0277 25 1 -0.3633 0.8904 -0.5132 26 1 -0.3633 -0.8896 -0.5145 27 1 5.0685 1.7491 1.0262 28 1 5.6057 1.0391 -0.5151 29 1 4.5306 2.4577 -0.5155 30 1 5.1826 -1.7689 -1.0151 31 1 5.6849 -1.0370 0.5277 32 1 4.6668 -2.4971 0.5250 33 1 1.8354 -2.7285 2.0068 34 1 2.0225 -5.2146 0.7294 35 1 0.3315 -4.6790 0.5807 36 1 3.1840 -8.0731 2.8948 37 1 -0.3690 -4.4084 4.2964 38 1 -1.0495 -4.0561 2.6187 39 1 -0.6324 -6.4658 1.9431 40 1 0.0484 -6.8189 3.6202 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404160387.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:28 Heat of formation + Delta-G solvation = 31.594982 kcal Electronic energy + Delta-G solvation = -21705.395481 eV Core-core repulsion = 18521.439952 eV Total energy + Delta-G solvation = -3183.955529 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.46183 -40.21453 -38.37443 -35.25298 -34.86778 -33.92962 -33.01533 -30.48897 -29.10580 -27.83235 -27.08526 -26.25750 -23.08753 -22.71090 -21.29073 -20.59849 -20.45007 -18.59614 -17.89526 -17.15537 -16.78443 -16.55727 -16.37811 -15.90264 -15.50569 -14.95731 -14.62257 -14.41198 -14.39297 -14.11920 -14.07066 -13.60012 -13.46540 -13.42809 -13.30127 -12.91473 -12.87977 -12.82894 -12.77566 -12.37382 -12.00218 -11.83360 -11.41264 -10.98726 -10.91208 -10.41164 -10.14411 -10.03008 -9.82519 -9.52781 -8.06150 -6.20492 0.67006 1.38700 1.45164 1.46055 1.47042 1.52936 1.65273 2.43710 2.53681 3.21329 3.45849 3.54487 3.58771 3.92642 4.16952 4.28929 4.32350 4.36865 4.40828 4.54980 4.57746 4.65902 4.68880 4.72477 4.75441 4.80755 4.90516 4.95343 5.00712 5.03977 5.09422 5.31495 5.51093 5.57810 5.61726 5.73128 5.80585 5.95842 6.39858 6.58813 6.77465 6.87172 7.37079 7.49071 9.00619 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017274 B = 0.005557 C = 0.004682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.581116 B = 5037.838268 C = 5978.974420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.104 3.896 3 N -0.319 5.319 4 N -0.360 5.360 5 C 0.086 3.914 6 C 0.131 3.869 7 C -0.097 4.097 8 C -0.313 4.313 9 C 0.596 3.404 10 O -0.594 6.594 11 N -0.686 5.686 12 C 0.179 3.821 13 C 0.002 3.998 14 C -0.504 4.504 15 H 0.061 0.939 16 C 0.027 3.973 17 N -0.907 5.907 18 Si 0.947 3.053 19 H -0.272 1.272 20 H -0.291 1.291 21 H -0.268 1.268 22 C -0.179 4.179 23 C -0.151 4.151 24 H 0.095 0.905 25 H 0.092 0.908 26 H 0.068 0.932 27 H 0.094 0.906 28 H 0.114 0.886 29 H 0.101 0.899 30 H 0.097 0.903 31 H 0.111 0.889 32 H 0.070 0.930 33 H 0.408 0.592 34 H 0.030 0.970 35 H 0.040 0.960 36 H 0.259 0.741 37 H 0.083 0.917 38 H 0.088 0.912 39 H 0.069 0.931 40 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.778 16.092 -2.927 16.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.062 4.062 3 N -0.141 5.141 4 N -0.139 5.139 5 C -0.053 4.053 6 C -0.001 4.001 7 C -0.155 4.155 8 C -0.328 4.328 9 C 0.382 3.618 10 O -0.476 6.476 11 N -0.334 5.334 12 C 0.055 3.945 13 C 0.001 3.999 14 C -0.542 4.542 15 H 0.079 0.921 16 C -0.174 4.174 17 N -0.544 5.544 18 Si 0.773 3.227 19 H -0.198 1.198 20 H -0.217 1.217 21 H -0.193 1.193 22 C -0.216 4.216 23 C -0.190 4.190 24 H 0.113 0.887 25 H 0.111 0.889 26 H 0.087 0.913 27 H 0.113 0.887 28 H 0.133 0.867 29 H 0.119 0.881 30 H 0.115 0.885 31 H 0.129 0.871 32 H 0.089 0.911 33 H 0.243 0.757 34 H 0.048 0.952 35 H 0.058 0.942 36 H 0.068 0.932 37 H 0.102 0.898 38 H 0.106 0.894 39 H 0.088 0.912 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.914 16.898 -3.744 17.744 hybrid contribution 0.769 -1.371 0.795 1.762 sum 4.683 15.527 -2.948 16.483 Atomic orbital electron populations 1.20309 0.84870 1.03833 1.04312 1.22616 0.97910 0.88552 0.97115 1.76982 0.86999 1.22468 1.27691 1.48475 1.06242 1.04098 1.55118 1.22361 0.83146 0.94435 1.05325 1.21661 0.96279 0.85347 0.96843 1.20655 0.92083 0.98021 1.04784 1.19919 0.93714 0.93373 1.25787 1.17602 0.76022 0.85081 0.83120 1.90699 1.54482 1.69335 1.33050 1.45896 1.66202 1.13067 1.08245 1.20622 0.96536 0.80555 0.96791 1.19076 0.88988 1.00176 0.91619 1.20594 1.08599 1.01909 1.23060 0.92111 1.25672 1.00106 0.95480 0.96155 1.70104 1.40544 1.02524 1.41230 0.85785 0.80430 0.77103 0.79346 1.19755 1.21696 1.19323 1.23000 1.00557 0.97605 1.00414 1.22379 1.03791 0.91559 1.01236 0.88682 0.88924 0.91314 0.88746 0.86727 0.88061 0.88506 0.87059 0.91068 0.75707 0.95172 0.94196 0.93193 0.89831 0.89352 0.91210 0.91695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.86 10.28 71.24 0.73 -1.13 16 2 C 0.10 3.22 7.26 43.52 0.32 3.53 16 3 N -0.32 -9.34 12.50 -46.68 -0.58 -9.92 16 4 N -0.36 -8.80 3.98 -354.31 -1.41 -10.21 16 5 C 0.09 1.09 11.06 127.77 1.41 2.51 16 6 C 0.13 3.67 7.01 42.14 0.30 3.97 16 7 C -0.10 -2.16 9.70 71.24 0.69 -1.47 16 8 C -0.31 -10.65 5.88 -20.15 -0.12 -10.77 16 9 C 0.60 23.96 6.98 86.66 0.60 24.57 16 10 O -0.59 -28.41 17.10 -4.03 -0.07 -28.48 16 11 N -0.69 -27.48 5.48 -466.38 -2.55 -30.03 16 12 C 0.18 8.24 5.50 86.38 0.48 8.71 16 13 C 0.00 0.10 1.47 -52.93 -0.08 0.02 16 14 C -0.50 -25.52 8.59 25.60 0.22 -25.30 16 15 H 0.06 2.99 7.82 -2.91 -0.02 2.96 16 16 C 0.03 1.40 5.43 84.65 0.46 1.86 16 17 N -0.91 -50.56 12.65 21.45 0.27 -50.29 16 18 Si 0.95 41.35 29.54 68.60 2.03 43.37 16 19 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 20 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 21 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 22 C -0.18 -7.17 9.96 30.62 0.30 -6.87 16 23 C -0.15 -6.93 9.14 30.62 0.28 -6.65 16 24 H 0.09 2.07 8.14 -2.39 -0.02 2.06 16 25 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 26 H 0.07 1.86 8.01 -2.39 -0.02 1.84 16 27 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.11 0.86 7.64 -2.39 -0.02 0.84 16 29 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.11 1.61 7.71 -2.39 -0.02 1.59 16 32 H 0.07 1.96 7.96 -2.39 -0.02 1.94 16 33 H 0.41 15.27 8.31 -92.71 -0.77 14.50 16 34 H 0.03 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.04 1.82 8.09 -2.38 -0.02 1.80 16 36 H 0.26 13.97 8.32 -92.71 -0.77 13.20 16 37 H 0.08 3.26 8.14 -2.39 -0.02 3.24 16 38 H 0.09 3.15 8.14 -2.39 -0.02 3.13 16 39 H 0.07 3.05 8.14 -2.39 -0.02 3.03 16 40 H 0.06 3.23 8.14 -2.39 -0.02 3.21 16 Total: -1.00 -68.90 346.10 3.54 -65.36 By element: Atomic # 1 Polarization: 26.96 SS G_CDS: 0.27 Total: 27.22 kcal Atomic # 6 Polarization: -12.62 SS G_CDS: 5.60 Total: -7.02 kcal Atomic # 7 Polarization: -96.18 SS G_CDS: -4.28 Total: -100.45 kcal Atomic # 8 Polarization: -28.41 SS G_CDS: -0.07 Total: -28.48 kcal Atomic # 14 Polarization: 41.35 SS G_CDS: 2.03 Total: 43.37 kcal Total: -68.90 3.54 -65.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404160387.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.954 kcal (2) G-P(sol) polarization free energy of solvation -68.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds