Wall clock time and date at job start Mon Mar 30 2020 01:43:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38568 * 119.97063 * 2 1 4 4 C 1.38819 * 118.07134 * 180.02562 * 3 2 1 5 5 C 1.39721 * 117.89886 * 359.97438 * 4 3 2 6 6 C 1.48155 * 120.18118 * 179.97438 * 5 4 3 7 7 O 1.21507 * 120.00127 * 359.97438 * 6 5 4 8 8 N 1.34781 * 119.99417 * 179.97438 * 6 5 4 9 9 C 1.46504 * 119.99187 * 179.97438 * 8 6 5 10 10 C 1.53006 * 109.46649 * 180.02562 * 9 8 6 11 11 C 1.53007 * 109.47170 * 300.00225 * 10 9 8 12 12 C 1.53001 * 109.47210 * 60.00306 * 10 9 8 13 13 C 1.53001 * 109.47120 * 180.02562 * 10 9 8 14 14 C 1.50694 * 109.46882 * 179.97438 * 13 10 9 15 15 H 1.07997 * 120.00355 * 0.02562 * 14 13 10 16 16 C 1.37884 * 119.99655 * 179.97438 * 14 13 10 17 17 N 1.31510 * 120.00201 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 119.99727 * 180.02562 * 16 14 13 19 19 H 1.48489 * 109.47418 * 60.00417 * 18 16 14 20 20 H 1.48499 * 109.46855 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47249 * 300.00072 * 18 16 14 22 22 N 1.32780 * 119.63339 * 0.02562 * 5 4 3 23 23 N 1.28350 * 122.02809 * 0.02562 * 22 5 4 24 24 H 1.08989 * 109.47046 * 269.98045 * 1 2 3 25 25 H 1.09003 * 109.46799 * 29.97980 * 1 2 3 26 26 H 1.09006 * 109.47092 * 149.97641 * 1 2 3 27 27 H 1.07998 * 120.96440 * 359.97438 * 3 2 1 28 28 H 1.08000 * 121.05109 * 179.97438 * 4 3 2 29 29 H 0.96994 * 120.00291 * 0.02562 * 8 6 5 30 30 H 1.08995 * 109.47880 * 300.00107 * 9 8 6 31 31 H 1.08994 * 109.46915 * 60.00815 * 9 8 6 32 32 H 1.09006 * 109.46670 * 60.00297 * 11 10 9 33 33 H 1.08993 * 109.46810 * 179.97438 * 11 10 9 34 34 H 1.09001 * 109.47023 * 300.00375 * 11 10 9 35 35 H 1.08997 * 109.46825 * 59.99714 * 12 10 9 36 36 H 1.08993 * 109.46991 * 179.97438 * 12 10 9 37 37 H 1.09006 * 109.47023 * 299.99950 * 12 10 9 38 38 H 1.08997 * 109.46907 * 300.00282 * 13 10 9 39 39 H 1.09001 * 109.47063 * 59.99630 * 13 10 9 40 40 H 0.96997 * 120.00219 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1993 1.2004 0.0000 4 6 3.5867 1.1544 -0.0005 5 6 4.1992 -0.1014 -0.0005 6 6 5.6768 -0.2095 -0.0017 7 8 6.3594 0.7957 -0.0031 8 7 6.2636 -1.4228 -0.0011 9 6 7.7248 -1.5296 -0.0028 10 6 8.1282 -3.0055 -0.0024 11 6 7.5684 -3.6869 1.2480 12 6 7.5655 -3.6884 -1.2506 13 6 9.6541 -3.1171 -0.0035 14 6 10.0514 -4.5707 -0.0025 15 1 9.2916 -5.3382 -0.0015 16 6 11.3850 -4.9209 -0.0037 17 7 12.3103 -3.9864 -0.0054 18 14 11.8775 -6.7228 -0.0032 19 1 11.3315 -7.3856 -1.2146 20 1 13.3585 -6.8312 -0.0041 21 1 11.3341 -7.3842 1.2104 22 7 3.4496 -1.1974 -0.0005 23 7 2.1672 -1.1451 -0.0010 24 1 -0.3633 -0.0004 1.0276 25 1 -0.3633 0.8902 -0.5135 26 1 -0.3633 -0.8898 -0.5142 27 1 1.6746 2.1444 -0.0004 28 1 4.1741 2.0607 -0.0010 29 1 5.7187 -2.2252 -0.0003 30 1 8.1236 -1.0446 -0.8937 31 1 8.1256 -1.0428 0.8862 32 1 6.4812 -3.6074 1.2491 33 1 7.8554 -4.7383 1.2480 34 1 7.9692 -3.2003 2.1372 35 1 7.9643 -3.2029 -2.1412 36 1 7.8533 -4.7396 -1.2505 37 1 6.4784 -3.6088 -1.2493 38 1 10.0533 -2.6316 -0.8940 39 1 10.0547 -2.6307 0.8859 40 1 13.2485 -4.2327 -0.0059 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000412340268.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:48 Heat of formation + Delta-G solvation = -0.542308 kcal Electronic energy + Delta-G solvation = -20962.908740 eV Core-core repulsion = 17777.559633 eV Total energy + Delta-G solvation = -3185.349107 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.45651 -39.44081 -37.13778 -34.49037 -33.57172 -33.34571 -32.06179 -29.04722 -27.10353 -26.46528 -26.32463 -25.19312 -23.67617 -22.71833 -20.87382 -18.91688 -17.94708 -17.37187 -16.30229 -15.94712 -15.84797 -15.53791 -14.90201 -14.77015 -14.48543 -13.74601 -13.70280 -13.53771 -13.17109 -13.08573 -12.82066 -12.72156 -12.14700 -12.03626 -11.75907 -11.14160 -10.97238 -10.85013 -10.61469 -10.59869 -10.40734 -10.25156 -10.16149 -10.05527 -10.02888 -9.85618 -9.17378 -8.92318 -8.81399 -8.33869 -5.98211 -3.99284 0.18016 0.43843 2.54923 3.06242 3.34175 3.39191 3.41039 3.44981 3.60225 4.02552 4.21068 4.38404 4.47390 4.60135 4.73679 5.01790 5.07243 5.33865 5.37343 5.43504 5.50013 5.62516 5.62665 5.78276 5.81399 6.21534 6.23082 6.27323 6.41711 6.50723 6.67541 6.75025 7.09005 7.10480 7.14067 7.59188 7.65455 7.77499 8.00474 8.17158 8.30215 8.42824 9.05227 9.63718 11.13280 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.039428 B = 0.003222 C = 0.003044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.990487 B = 8688.663893 C = 9196.986014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.079 3.921 3 C -0.124 4.124 4 C -0.063 4.063 5 C 0.023 3.977 6 C 0.567 3.433 7 O -0.534 6.534 8 N -0.695 5.695 9 C 0.125 3.875 10 C -0.072 4.072 11 C -0.129 4.129 12 C -0.129 4.129 13 C 0.037 3.963 14 C -0.511 4.511 15 H 0.059 0.941 16 C 0.056 3.944 17 N -0.895 5.895 18 Si 0.889 3.111 19 H -0.277 1.277 20 H -0.289 1.289 21 H -0.277 1.277 22 N -0.205 5.205 23 N -0.241 5.241 24 H 0.087 0.913 25 H 0.081 0.919 26 H 0.085 0.915 27 H 0.157 0.843 28 H 0.163 0.837 29 H 0.410 0.590 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.031 0.969 33 H 0.068 0.932 34 H 0.047 0.953 35 H 0.047 0.953 36 H 0.068 0.932 37 H 0.031 0.969 38 H 0.019 0.981 39 H 0.019 0.981 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.535 9.780 0.029 24.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.064 4.064 3 C -0.153 4.153 4 C -0.092 4.092 5 C -0.123 4.123 6 C 0.349 3.651 7 O -0.411 6.411 8 N -0.346 5.346 9 C 0.002 3.998 10 C -0.073 4.073 11 C -0.186 4.186 12 C -0.186 4.186 13 C -0.001 4.001 14 C -0.549 4.549 15 H 0.078 0.922 16 C -0.145 4.145 17 N -0.535 5.535 18 Si 0.717 3.283 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.203 1.203 22 N -0.051 5.051 23 N -0.086 5.086 24 H 0.105 0.895 25 H 0.100 0.900 26 H 0.104 0.896 27 H 0.174 0.826 28 H 0.181 0.819 29 H 0.248 0.752 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.050 0.950 33 H 0.087 0.913 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.087 0.913 37 H 0.050 0.950 38 H 0.037 0.963 39 H 0.037 0.963 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -21.841 8.851 0.026 23.566 hybrid contribution 0.240 0.277 0.011 0.367 sum -21.601 9.128 0.036 23.450 Atomic orbital electron populations 1.20736 0.87071 1.04365 1.03913 1.23108 0.99383 0.90552 0.93365 1.22310 0.94258 1.00127 0.98642 1.22475 0.95027 0.99330 0.92355 1.22994 0.96846 0.91955 1.00539 1.17570 0.84919 0.84558 0.78067 1.90796 1.63422 1.36146 1.50716 1.46127 1.09352 1.07710 1.71383 1.21786 0.76956 0.98834 1.02190 1.20923 1.00536 0.90503 0.95328 1.21783 0.97540 1.02209 0.97112 1.21781 0.97535 1.02208 0.97125 1.19088 0.86094 0.97390 0.97504 1.21152 0.91476 0.91999 1.50314 0.92241 1.25008 0.96852 0.97067 0.95547 1.69950 1.00372 1.32302 1.50858 0.86704 0.77309 0.85704 0.78553 1.20311 1.21427 1.20314 1.73234 0.99691 1.26196 1.06016 1.73107 1.00986 1.24550 1.09969 0.89483 0.90006 0.89612 0.82570 0.81896 0.75206 0.91309 0.91301 0.94981 0.91303 0.93357 0.93363 0.91302 0.94968 0.96299 0.96297 0.92997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.50 10.19 36.01 0.37 -0.13 16 2 C 0.08 0.69 6.87 -82.32 -0.57 0.13 16 3 C -0.12 -0.93 9.86 -39.24 -0.39 -1.32 16 4 C -0.06 -0.64 9.73 -38.81 -0.38 -1.01 16 5 C 0.02 0.31 6.83 -82.83 -0.57 -0.26 16 6 C 0.57 8.97 7.82 -12.19 -0.10 8.87 16 7 O -0.53 -9.72 16.39 5.36 0.09 -9.63 16 8 N -0.69 -11.01 4.95 -61.15 -0.30 -11.31 16 9 C 0.12 2.24 4.57 -4.04 -0.02 2.22 16 10 C -0.07 -1.41 0.54 -154.50 -0.08 -1.49 16 11 C -0.13 -2.36 8.05 37.16 0.30 -2.06 16 12 C -0.13 -2.36 8.05 37.16 0.30 -2.06 16 13 C 0.04 0.90 4.04 -27.88 -0.11 0.79 16 14 C -0.51 -13.66 7.65 -34.44 -0.26 -13.92 16 15 H 0.06 1.53 5.68 -52.49 -0.30 1.23 16 16 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 17 N -0.90 -26.52 13.29 55.43 0.74 -25.78 16 18 Si 0.89 21.36 29.54 -169.99 -5.02 16.33 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 20 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 N -0.21 -2.84 10.75 33.32 0.36 -2.48 16 23 N -0.24 -2.99 11.43 33.63 0.38 -2.60 16 24 H 0.09 0.33 8.14 -51.94 -0.42 -0.09 16 25 H 0.08 0.21 8.09 -51.93 -0.42 -0.21 16 26 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.16 0.56 8.06 -52.49 -0.42 0.13 16 28 H 0.16 1.44 7.72 -52.49 -0.41 1.04 16 29 H 0.41 6.12 5.52 -40.82 -0.23 5.89 16 30 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 31 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 32 H 0.03 0.50 6.86 -51.93 -0.36 0.14 16 33 H 0.07 1.34 6.62 -51.93 -0.34 0.99 16 34 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.07 1.34 6.62 -51.93 -0.34 0.99 16 37 H 0.03 0.50 6.86 -51.93 -0.36 0.15 16 38 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 332.77 15.07 5.01 5.01 Total: -1.00 -31.94 332.77 -6.03 -37.97 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: -5.69 Total: 1.25 kcal Atomic # 6 Polarization: -7.16 SS G_CDS: -1.60 Total: -8.76 kcal Atomic # 7 Polarization: -43.35 SS G_CDS: 1.18 Total: -42.18 kcal Atomic # 8 Polarization: -9.72 SS G_CDS: 0.09 Total: -9.63 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.94 -6.03 -37.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412340268.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.427 kcal (2) G-P(sol) polarization free energy of solvation -31.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds