Wall clock time and date at job start Mon Mar 30 2020 01:43:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38568 * 119.97063 * 2 1 4 4 C 1.38819 * 118.07134 * 180.02562 * 3 2 1 5 5 C 1.39721 * 117.89886 * 359.97438 * 4 3 2 6 6 C 1.48155 * 120.18118 * 179.97438 * 5 4 3 7 7 O 1.21507 * 120.00127 * 359.97438 * 6 5 4 8 8 N 1.34781 * 119.99417 * 179.97438 * 6 5 4 9 9 C 1.46504 * 119.99187 * 179.97438 * 8 6 5 10 10 C 1.53006 * 109.46649 * 180.02562 * 9 8 6 11 11 C 1.53007 * 109.47170 * 300.00225 * 10 9 8 12 12 C 1.53001 * 109.47210 * 60.00306 * 10 9 8 13 13 C 1.53001 * 109.47120 * 180.02562 * 10 9 8 14 14 C 1.50694 * 109.46882 * 179.97438 * 13 10 9 15 15 H 1.07997 * 120.00355 * 0.02562 * 14 13 10 16 16 C 1.37884 * 119.99655 * 179.97438 * 14 13 10 17 17 N 1.31510 * 120.00201 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 119.99727 * 180.02562 * 16 14 13 19 19 H 1.48489 * 109.47418 * 60.00417 * 18 16 14 20 20 H 1.48499 * 109.46855 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47249 * 300.00072 * 18 16 14 22 22 N 1.32780 * 119.63339 * 0.02562 * 5 4 3 23 23 N 1.28350 * 122.02809 * 0.02562 * 22 5 4 24 24 H 1.08989 * 109.47046 * 269.98045 * 1 2 3 25 25 H 1.09003 * 109.46799 * 29.97980 * 1 2 3 26 26 H 1.09006 * 109.47092 * 149.97641 * 1 2 3 27 27 H 1.07998 * 120.96440 * 359.97438 * 3 2 1 28 28 H 1.08000 * 121.05109 * 179.97438 * 4 3 2 29 29 H 0.96994 * 120.00291 * 0.02562 * 8 6 5 30 30 H 1.08995 * 109.47880 * 300.00107 * 9 8 6 31 31 H 1.08994 * 109.46915 * 60.00815 * 9 8 6 32 32 H 1.09006 * 109.46670 * 60.00297 * 11 10 9 33 33 H 1.08993 * 109.46810 * 179.97438 * 11 10 9 34 34 H 1.09001 * 109.47023 * 300.00375 * 11 10 9 35 35 H 1.08997 * 109.46825 * 59.99714 * 12 10 9 36 36 H 1.08993 * 109.46991 * 179.97438 * 12 10 9 37 37 H 1.09006 * 109.47023 * 299.99950 * 12 10 9 38 38 H 1.08997 * 109.46907 * 300.00282 * 13 10 9 39 39 H 1.09001 * 109.47063 * 59.99630 * 13 10 9 40 40 H 0.96997 * 120.00219 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1993 1.2004 0.0000 4 6 3.5867 1.1544 -0.0005 5 6 4.1992 -0.1014 -0.0005 6 6 5.6768 -0.2095 -0.0017 7 8 6.3594 0.7957 -0.0031 8 7 6.2636 -1.4228 -0.0011 9 6 7.7248 -1.5296 -0.0028 10 6 8.1282 -3.0055 -0.0024 11 6 7.5684 -3.6869 1.2480 12 6 7.5655 -3.6884 -1.2506 13 6 9.6541 -3.1171 -0.0035 14 6 10.0514 -4.5707 -0.0025 15 1 9.2916 -5.3382 -0.0015 16 6 11.3850 -4.9209 -0.0037 17 7 12.3103 -3.9864 -0.0054 18 14 11.8775 -6.7228 -0.0032 19 1 11.3315 -7.3856 -1.2146 20 1 13.3585 -6.8312 -0.0041 21 1 11.3341 -7.3842 1.2104 22 7 3.4496 -1.1974 -0.0005 23 7 2.1672 -1.1451 -0.0010 24 1 -0.3633 -0.0004 1.0276 25 1 -0.3633 0.8902 -0.5135 26 1 -0.3633 -0.8898 -0.5142 27 1 1.6746 2.1444 -0.0004 28 1 4.1741 2.0607 -0.0010 29 1 5.7187 -2.2252 -0.0003 30 1 8.1236 -1.0446 -0.8937 31 1 8.1256 -1.0428 0.8862 32 1 6.4812 -3.6074 1.2491 33 1 7.8554 -4.7383 1.2480 34 1 7.9692 -3.2003 2.1372 35 1 7.9643 -3.2029 -2.1412 36 1 7.8533 -4.7396 -1.2505 37 1 6.4784 -3.6088 -1.2493 38 1 10.0533 -2.6316 -0.8940 39 1 10.0547 -2.6307 0.8859 40 1 13.2485 -4.2327 -0.0059 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000412340268.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:48 Heat of formation + Delta-G solvation = -21.983329 kcal Electronic energy + Delta-G solvation = -20963.838493 eV Core-core repulsion = 17777.559633 eV Total energy + Delta-G solvation = -3186.278859 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.31332 -40.70614 -38.70548 -35.50054 -34.96464 -34.16932 -33.88102 -29.84538 -28.99453 -27.99175 -27.65153 -26.14900 -25.01874 -24.01164 -22.09290 -20.28994 -19.14187 -18.46979 -18.29106 -16.92768 -16.88564 -16.63439 -16.40602 -16.01702 -15.80090 -15.11628 -14.88962 -14.68797 -14.35598 -14.17807 -13.94579 -13.91320 -13.63383 -13.19637 -12.85581 -12.76358 -12.61718 -12.59269 -12.33863 -12.23857 -12.01870 -11.56040 -11.42685 -11.35949 -10.96823 -10.87187 -10.84717 -10.83773 -10.49775 -10.18473 -8.13332 -6.20772 -0.65244 -0.29399 1.43040 1.45015 1.50498 1.52171 1.89772 2.45125 2.51940 2.74011 3.21058 3.30782 3.51079 3.69303 3.84613 3.92669 3.99720 4.04949 4.20070 4.56347 4.64007 4.67340 4.68909 4.75310 4.79323 4.93749 4.96293 5.02482 5.05645 5.10466 5.29270 5.32037 5.42512 5.48365 5.50533 5.56029 5.78383 5.89968 6.28732 6.36188 6.93513 6.94230 7.46033 7.46618 8.98966 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.039428 B = 0.003222 C = 0.003044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.990487 B = 8688.663893 C = 9196.986014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.081 3.919 3 C -0.102 4.102 4 C -0.070 4.070 5 C 0.002 3.998 6 C 0.569 3.431 7 O -0.564 6.564 8 N -0.691 5.691 9 C 0.137 3.863 10 C -0.065 4.065 11 C -0.123 4.123 12 C -0.123 4.123 13 C 0.042 3.958 14 C -0.516 4.516 15 H 0.071 0.929 16 C -0.003 4.003 17 N -0.937 5.937 18 Si 0.957 3.043 19 H -0.267 1.267 20 H -0.290 1.290 21 H -0.267 1.267 22 N -0.229 5.229 23 N -0.273 5.273 24 H 0.102 0.898 25 H 0.113 0.887 26 H 0.081 0.919 27 H 0.206 0.794 28 H 0.173 0.827 29 H 0.416 0.584 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.061 0.939 33 H 0.057 0.943 34 H 0.040 0.960 35 H 0.040 0.960 36 H 0.057 0.943 37 H 0.061 0.939 38 H -0.010 1.010 39 H -0.010 1.010 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.888 9.893 0.038 27.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.062 4.062 3 C -0.130 4.130 4 C -0.099 4.099 5 C -0.145 4.145 6 C 0.353 3.647 7 O -0.443 6.443 8 N -0.342 5.342 9 C 0.014 3.986 10 C -0.065 4.065 11 C -0.180 4.180 12 C -0.180 4.180 13 C 0.004 3.996 14 C -0.554 4.554 15 H 0.089 0.911 16 C -0.200 4.200 17 N -0.578 5.578 18 Si 0.783 3.217 19 H -0.192 1.192 20 H -0.216 1.216 21 H -0.192 1.192 22 N -0.075 5.075 23 N -0.117 5.117 24 H 0.120 0.880 25 H 0.132 0.868 26 H 0.100 0.900 27 H 0.223 0.777 28 H 0.190 0.810 29 H 0.255 0.745 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.076 0.924 37 H 0.080 0.920 38 H 0.008 0.992 39 H 0.008 0.992 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -25.234 8.941 0.035 26.771 hybrid contribution 1.140 0.344 0.010 1.190 sum -24.094 9.285 0.044 25.821 Atomic orbital electron populations 1.20923 0.84012 1.05774 1.05215 1.23820 1.01278 0.90026 0.91078 1.22827 0.92941 1.01657 0.95606 1.22696 0.96530 0.98343 0.92311 1.22662 0.95045 0.93553 1.03258 1.17945 0.86244 0.83753 0.76792 1.90769 1.64576 1.36936 1.51992 1.45949 1.08124 1.08375 1.71739 1.21415 0.78569 0.97468 1.01162 1.20723 0.96983 0.91897 0.96915 1.21707 0.99332 1.01050 0.95946 1.21705 0.99324 1.01048 0.95962 1.18952 0.89824 0.96110 0.94691 1.21557 0.91790 0.93072 1.48936 0.91121 1.25917 0.97089 1.01578 0.95441 1.70102 1.00635 1.34625 1.52487 0.85614 0.76718 0.80284 0.79118 1.19238 1.21579 1.19245 1.73139 1.00638 1.26722 1.06974 1.73039 1.00375 1.26721 1.11588 0.87965 0.86833 0.90012 0.77730 0.80967 0.74486 0.92451 0.92442 0.92000 0.92352 0.94033 0.94038 0.92351 0.91989 0.99174 0.99172 0.93132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.57 10.19 71.24 0.73 0.16 16 2 C 0.08 1.17 6.87 42.59 0.29 1.46 16 3 C -0.10 -1.14 9.86 22.49 0.22 -0.91 16 4 C -0.07 -1.29 9.73 22.77 0.22 -1.07 16 5 C 0.00 0.04 6.83 42.00 0.29 0.33 16 6 C 0.57 18.09 7.82 86.88 0.68 18.77 16 7 O -0.56 -20.89 16.39 -3.74 -0.06 -20.95 16 8 N -0.69 -21.91 4.95 -465.67 -2.31 -24.22 16 9 C 0.14 5.08 4.57 86.38 0.39 5.47 16 10 C -0.06 -2.55 0.54 -52.18 -0.03 -2.58 16 11 C -0.12 -4.44 8.05 71.98 0.58 -3.87 16 12 C -0.12 -4.45 8.05 71.98 0.58 -3.87 16 13 C 0.04 2.15 4.04 29.85 0.12 2.27 16 14 C -0.52 -28.01 7.65 25.60 0.20 -27.81 16 15 H 0.07 3.62 5.68 -2.91 -0.02 3.60 16 16 C 0.00 -0.18 5.46 84.66 0.46 0.28 16 17 N -0.94 -57.23 13.29 21.45 0.28 -56.94 16 18 Si 0.96 44.10 29.54 68.60 2.03 46.12 16 19 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 20 H -0.29 -13.33 7.11 99.48 0.71 -12.63 16 21 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 22 N -0.23 -6.13 10.75 -48.49 -0.52 -6.65 16 23 N -0.27 -6.31 11.43 -47.53 -0.54 -6.85 16 24 H 0.10 0.34 8.14 -2.39 -0.02 0.32 16 25 H 0.11 -0.04 8.09 -2.39 -0.02 -0.06 16 26 H 0.08 0.58 8.14 -2.38 -0.02 0.56 16 27 H 0.21 0.23 8.06 -2.91 -0.02 0.21 16 28 H 0.17 2.75 7.72 -2.91 -0.02 2.73 16 29 H 0.42 12.10 5.52 -92.71 -0.51 11.59 16 30 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 31 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 32 H 0.06 1.85 6.86 -2.38 -0.02 1.84 16 33 H 0.06 2.22 6.62 -2.39 -0.02 2.21 16 34 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.06 2.23 6.62 -2.39 -0.02 2.21 16 37 H 0.06 1.86 6.86 -2.38 -0.02 1.84 16 38 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 39 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 40 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 Total: -1.00 -72.19 332.77 4.15 -68.04 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: 0.54 Total: 12.82 kcal Atomic # 6 Polarization: -16.10 SS G_CDS: 4.73 Total: -11.37 kcal Atomic # 7 Polarization: -91.58 SS G_CDS: -3.08 Total: -94.67 kcal Atomic # 8 Polarization: -20.89 SS G_CDS: -0.06 Total: -20.95 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.12 kcal Total: -72.19 4.15 -68.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412340268.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.056 kcal (2) G-P(sol) polarization free energy of solvation -72.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds