Wall clock time and date at job start Mon Mar 30 2020 01:54:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50710 * 119.99835 * 2 1 4 4 N 1.46892 * 109.46943 * 125.24021 * 3 2 1 5 5 C 1.46898 * 111.00297 * 65.98935 * 4 3 2 6 6 C 1.50691 * 109.47583 * 66.04293 * 5 4 3 7 7 H 1.08011 * 119.99805 * 359.97438 * 6 5 4 8 8 C 1.37878 * 120.00468 * 180.02562 * 6 5 4 9 9 N 1.31512 * 119.99670 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00219 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.46994 * 359.97438 * 10 8 6 12 12 H 1.48502 * 109.46992 * 119.99653 * 10 8 6 13 13 H 1.48498 * 109.46989 * 239.99736 * 10 8 6 14 14 C 1.46896 * 111.00438 * 302.02668 * 4 3 2 15 15 H 1.09007 * 109.46833 * 66.18725 * 14 4 3 16 16 C 1.52998 * 109.47606 * 186.18399 * 14 4 3 17 17 C 1.50705 * 109.47484 * 306.18916 * 14 4 3 18 18 N 1.31787 * 119.09700 * 133.54180 * 17 14 4 19 19 C 1.32489 * 120.96438 * 179.97438 * 18 17 14 20 20 C 1.50701 * 120.41131 * 180.02562 * 19 18 17 21 21 C 1.38231 * 119.17675 * 0.02562 * 19 18 17 22 22 C 1.39381 * 118.34881 * 0.02562 * 21 19 18 23 23 O 1.35521 * 120.51096 * 179.97438 * 22 21 19 24 24 N 1.31769 * 119.08987 * 313.52727 * 17 14 4 25 25 H 1.07998 * 120.00138 * 0.02562 * 1 2 3 26 26 H 1.07999 * 119.99774 * 180.02562 * 1 2 3 27 27 H 1.08004 * 120.00554 * 180.02562 * 2 1 3 28 28 H 1.08998 * 109.46683 * 5.23707 * 3 2 1 29 29 H 1.08998 * 109.46791 * 245.23709 * 3 2 1 30 30 H 1.09000 * 109.47143 * 186.04779 * 5 4 3 31 31 H 1.08999 * 109.46833 * 306.03798 * 5 4 3 32 32 H 0.97003 * 120.00170 * 180.02562 * 9 8 6 33 33 H 1.08996 * 109.47074 * 300.00200 * 16 14 4 34 34 H 1.08998 * 109.46909 * 60.00211 * 16 14 4 35 35 H 1.09001 * 109.47435 * 180.02562 * 16 14 4 36 36 H 1.09006 * 109.46962 * 269.98179 * 20 19 18 37 37 H 1.08999 * 109.46768 * 29.97775 * 20 19 18 38 38 H 1.08994 * 109.47195 * 149.97974 * 20 19 18 39 39 H 1.07997 * 120.82435 * 179.72271 * 21 19 18 40 40 H 0.96691 * 113.99937 * 89.99499 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 3.0003 1.3297 1.1311 5 6 4.0521 0.3176 0.9656 6 6 4.9115 0.6753 -0.2194 7 1 4.6974 1.5653 -0.7927 8 6 5.9703 -0.1342 -0.5726 9 7 6.2306 -1.2181 0.1252 10 14 7.0352 0.3089 -2.0420 11 1 6.5362 1.5667 -2.6536 12 1 8.4393 0.4973 -1.5969 13 1 6.9761 -0.7856 -3.0440 14 6 2.2921 1.1495 2.4054 15 1 1.8663 0.1468 2.4458 16 6 3.2732 1.3339 3.5648 17 6 1.1876 2.1690 2.5149 18 7 -0.0096 1.7777 2.9026 19 6 -1.0072 2.6426 3.0121 20 6 -2.3712 2.1816 3.4572 21 6 -0.7814 3.9731 2.7131 22 6 0.4963 4.3522 2.3051 23 8 0.7662 5.6449 2.0005 24 7 1.4457 3.4272 2.2206 25 1 -0.5400 0.9353 -0.0004 26 1 -0.5400 -0.9353 0.0004 27 1 1.8501 -0.9353 -0.0004 28 1 1.3588 2.1315 0.0938 29 1 2.6179 1.4046 -0.9332 30 1 4.6681 0.2836 1.8642 31 1 3.5948 -0.6581 0.8016 32 1 6.9758 -1.7874 -0.1230 33 1 4.0719 0.5965 3.4857 34 1 3.6989 2.3365 3.5245 35 1 2.7477 1.1997 4.5103 36 1 -2.9601 1.8949 2.5858 37 1 -2.2659 1.3246 4.1224 38 1 -2.8742 2.9917 3.9851 39 1 -1.5765 4.7000 2.7889 40 1 1.0680 6.1714 2.7532 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000428854122.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:31 Heat of formation + Delta-G solvation = 40.669522 kcal Electronic energy + Delta-G solvation = -22087.478407 eV Core-core repulsion = 18903.916380 eV Total energy + Delta-G solvation = -3183.562028 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.19549 -38.09348 -37.29721 -34.21307 -33.05176 -32.69371 -31.57755 -29.77979 -28.41051 -27.08773 -24.57023 -24.39331 -22.95170 -21.86466 -20.24117 -18.85958 -18.50476 -17.55779 -16.53912 -15.89299 -15.43780 -15.14517 -14.93418 -14.44706 -14.13475 -13.96551 -13.74908 -13.48272 -13.05588 -12.70697 -12.69103 -12.13025 -11.97431 -11.74453 -11.43878 -11.26539 -11.11343 -10.82021 -10.77315 -10.60169 -10.53307 -10.27099 -10.13063 -9.75009 -9.36833 -9.17726 -9.06988 -8.77227 -8.38989 -7.18625 -5.99555 -3.99334 0.90292 1.09348 2.79638 3.34156 3.36528 3.41711 3.47392 3.76674 3.92593 4.35701 4.47316 4.92549 4.92861 5.04875 5.15855 5.34958 5.35414 5.38769 5.47808 5.60516 5.69503 5.72511 5.81156 5.91013 6.04369 6.15771 6.32047 6.42258 6.46809 6.66960 6.74283 7.09846 7.11354 7.14192 7.35322 7.38883 7.39549 7.83778 8.08877 8.20215 8.32403 8.56690 9.08032 9.64162 11.11332 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022913 B = 0.005010 C = 0.004750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.700237 B = 5587.043897 C = 5892.965082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.166 4.166 3 C 0.089 3.911 4 N -0.508 5.508 5 C 0.187 3.813 6 C -0.501 4.501 7 H 0.064 0.936 8 C 0.056 3.944 9 N -0.899 5.899 10 Si 0.895 3.105 11 H -0.272 1.272 12 H -0.284 1.284 13 H -0.286 1.286 14 C 0.146 3.854 15 H 0.063 0.937 16 C -0.138 4.138 17 C 0.373 3.627 18 N -0.520 5.520 19 C 0.183 3.817 20 C -0.104 4.104 21 C -0.260 4.260 22 C 0.355 3.645 23 O -0.477 6.477 24 N -0.505 5.505 25 H 0.079 0.921 26 H 0.088 0.912 27 H 0.114 0.886 28 H 0.050 0.950 29 H 0.095 0.905 30 H 0.039 0.961 31 H -0.003 1.003 32 H 0.260 0.740 33 H 0.078 0.922 34 H 0.068 0.932 35 H 0.048 0.952 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.077 0.923 39 H 0.145 0.855 40 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.586 8.156 8.012 19.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.186 4.186 3 C -0.039 4.039 4 N -0.232 5.232 5 C 0.063 3.937 6 C -0.540 4.540 7 H 0.082 0.918 8 C -0.145 4.145 9 N -0.539 5.539 10 Si 0.724 3.276 11 H -0.197 1.197 12 H -0.211 1.211 13 H -0.212 1.212 14 C 0.035 3.965 15 H 0.081 0.919 16 C -0.196 4.196 17 C 0.106 3.894 18 N -0.237 5.237 19 C 0.037 3.963 20 C -0.161 4.161 21 C -0.283 4.283 22 C 0.167 3.833 23 O -0.284 6.284 24 N -0.229 5.229 25 H 0.097 0.903 26 H 0.107 0.893 27 H 0.131 0.869 28 H 0.068 0.932 29 H 0.113 0.887 30 H 0.057 0.943 31 H 0.015 0.985 32 H 0.069 0.931 33 H 0.097 0.903 34 H 0.087 0.913 35 H 0.067 0.933 36 H 0.103 0.897 37 H 0.102 0.898 38 H 0.096 0.904 39 H 0.163 0.837 40 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -14.670 7.749 7.403 18.168 hybrid contribution -0.319 0.275 -0.449 0.615 sum -14.989 8.024 6.954 18.369 Atomic orbital electron populations 1.23509 0.95841 1.00292 1.04128 1.23902 0.96230 1.01407 0.97023 1.21264 0.93821 0.92004 0.96850 1.62455 1.10918 1.51938 0.97867 1.19891 0.88065 0.87649 0.98135 1.21167 1.11990 1.08779 1.12081 0.91807 1.24944 0.97505 0.95022 0.97019 1.69962 1.29867 1.14195 1.39864 0.86475 0.80289 0.78356 0.82528 1.19665 1.21058 1.21226 1.20329 0.89617 0.92700 0.93814 0.91925 1.21836 0.98931 1.03999 0.94842 1.23098 0.90667 0.88816 0.86868 1.68157 1.00319 1.38347 1.16843 1.21587 0.95629 0.88691 0.90385 1.20753 0.90294 1.02675 1.02370 1.22693 0.99280 0.98858 1.07492 1.19562 0.88563 0.85899 0.89290 1.84727 1.88137 1.16541 1.38990 1.67926 1.36438 1.02597 1.15949 0.90251 0.89333 0.86854 0.93174 0.88742 0.94306 0.98485 0.93052 0.90335 0.91323 0.93339 0.89737 0.89824 0.90379 0.83699 0.73749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.35 14.32 29.02 0.42 -2.94 16 2 C -0.17 -3.21 7.65 -36.02 -0.28 -3.48 16 3 C 0.09 1.87 5.23 -4.98 -0.03 1.84 16 4 N -0.51 -11.25 4.40 -230.92 -1.02 -12.27 16 5 C 0.19 4.77 4.42 -4.98 -0.02 4.75 16 6 C -0.50 -13.99 8.43 -34.44 -0.29 -14.28 16 7 H 0.06 1.80 7.14 -52.48 -0.37 1.43 16 8 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 9 N -0.90 -26.38 13.29 55.43 0.74 -25.64 16 10 Si 0.90 21.79 29.54 -169.99 -5.02 16.77 16 11 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 13 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 14 C 0.15 2.82 2.02 -68.87 -0.14 2.68 16 15 H 0.06 1.25 7.24 -51.92 -0.38 0.87 16 16 C -0.14 -2.46 9.03 37.16 0.34 -2.12 16 17 C 0.37 6.61 5.01 -157.22 -0.79 5.82 16 18 N -0.52 -8.25 10.25 -7.05 -0.07 -8.32 16 19 C 0.18 2.31 6.82 -82.31 -0.56 1.74 16 20 C -0.10 -0.86 10.22 36.01 0.37 -0.50 16 21 C -0.26 -3.09 9.81 -39.16 -0.38 -3.47 16 22 C 0.36 5.14 7.83 -16.70 -0.13 5.01 16 23 O -0.48 -5.83 13.58 -18.26 -0.25 -6.08 16 24 N -0.51 -8.98 9.59 -10.78 -0.10 -9.09 16 25 H 0.08 1.32 7.84 -52.49 -0.41 0.91 16 26 H 0.09 1.33 8.06 -52.49 -0.42 0.91 16 27 H 0.11 2.36 6.83 -52.48 -0.36 2.00 16 28 H 0.05 1.04 6.26 -51.93 -0.32 0.72 16 29 H 0.09 2.15 6.71 -51.93 -0.35 1.80 16 30 H 0.04 1.04 5.91 -51.93 -0.31 0.73 16 31 H 0.00 -0.07 6.42 -51.93 -0.33 -0.40 16 32 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 33 H 0.08 1.47 6.25 -51.93 -0.32 1.15 16 34 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.08 0.45 8.09 -51.93 -0.42 0.03 16 39 H 0.15 1.24 8.06 -52.49 -0.42 0.82 16 40 H 0.40 2.71 9.06 45.56 0.41 3.12 16 LS Contribution 332.96 15.07 5.02 5.02 Total: -1.00 -32.42 332.96 -7.14 -39.56 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -4.84 Total: 3.51 kcal Atomic # 6 Polarization: -1.86 SS G_CDS: -1.60 Total: -3.46 kcal Atomic # 7 Polarization: -54.86 SS G_CDS: -0.45 Total: -55.32 kcal Atomic # 8 Polarization: -5.83 SS G_CDS: -0.25 Total: -6.08 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -32.42 -7.14 -39.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428854122.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.231 kcal (2) G-P(sol) polarization free energy of solvation -32.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds