Wall clock time and date at job start Mon Mar 30 2020 01:54:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50710 * 119.99835 * 2 1 4 4 N 1.46892 * 109.46943 * 125.24021 * 3 2 1 5 5 C 1.46898 * 111.00297 * 65.98935 * 4 3 2 6 6 C 1.50691 * 109.47583 * 66.04293 * 5 4 3 7 7 H 1.08011 * 119.99805 * 359.97438 * 6 5 4 8 8 C 1.37878 * 120.00468 * 180.02562 * 6 5 4 9 9 N 1.31512 * 119.99670 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00219 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.46994 * 359.97438 * 10 8 6 12 12 H 1.48502 * 109.46992 * 119.99653 * 10 8 6 13 13 H 1.48498 * 109.46989 * 239.99736 * 10 8 6 14 14 C 1.46896 * 111.00438 * 302.02668 * 4 3 2 15 15 H 1.09007 * 109.46833 * 66.18725 * 14 4 3 16 16 C 1.52998 * 109.47606 * 186.18399 * 14 4 3 17 17 C 1.50705 * 109.47484 * 306.18916 * 14 4 3 18 18 N 1.31787 * 119.09700 * 133.54180 * 17 14 4 19 19 C 1.32489 * 120.96438 * 179.97438 * 18 17 14 20 20 C 1.50701 * 120.41131 * 180.02562 * 19 18 17 21 21 C 1.38231 * 119.17675 * 0.02562 * 19 18 17 22 22 C 1.39381 * 118.34881 * 0.02562 * 21 19 18 23 23 O 1.35521 * 120.51096 * 179.97438 * 22 21 19 24 24 N 1.31769 * 119.08987 * 313.52727 * 17 14 4 25 25 H 1.07998 * 120.00138 * 0.02562 * 1 2 3 26 26 H 1.07999 * 119.99774 * 180.02562 * 1 2 3 27 27 H 1.08004 * 120.00554 * 180.02562 * 2 1 3 28 28 H 1.08998 * 109.46683 * 5.23707 * 3 2 1 29 29 H 1.08998 * 109.46791 * 245.23709 * 3 2 1 30 30 H 1.09000 * 109.47143 * 186.04779 * 5 4 3 31 31 H 1.08999 * 109.46833 * 306.03798 * 5 4 3 32 32 H 0.97003 * 120.00170 * 180.02562 * 9 8 6 33 33 H 1.08996 * 109.47074 * 300.00200 * 16 14 4 34 34 H 1.08998 * 109.46909 * 60.00211 * 16 14 4 35 35 H 1.09001 * 109.47435 * 180.02562 * 16 14 4 36 36 H 1.09006 * 109.46962 * 269.98179 * 20 19 18 37 37 H 1.08999 * 109.46768 * 29.97775 * 20 19 18 38 38 H 1.08994 * 109.47195 * 149.97974 * 20 19 18 39 39 H 1.07997 * 120.82435 * 179.72271 * 21 19 18 40 40 H 0.96691 * 113.99937 * 89.99499 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 3.0003 1.3297 1.1311 5 6 4.0521 0.3176 0.9656 6 6 4.9115 0.6753 -0.2194 7 1 4.6974 1.5653 -0.7927 8 6 5.9703 -0.1342 -0.5726 9 7 6.2306 -1.2181 0.1252 10 14 7.0352 0.3089 -2.0420 11 1 6.5362 1.5667 -2.6536 12 1 8.4393 0.4973 -1.5969 13 1 6.9761 -0.7856 -3.0440 14 6 2.2921 1.1495 2.4054 15 1 1.8663 0.1468 2.4458 16 6 3.2732 1.3339 3.5648 17 6 1.1876 2.1690 2.5149 18 7 -0.0096 1.7777 2.9026 19 6 -1.0072 2.6426 3.0121 20 6 -2.3712 2.1816 3.4572 21 6 -0.7814 3.9731 2.7131 22 6 0.4963 4.3522 2.3051 23 8 0.7662 5.6449 2.0005 24 7 1.4457 3.4272 2.2206 25 1 -0.5400 0.9353 -0.0004 26 1 -0.5400 -0.9353 0.0004 27 1 1.8501 -0.9353 -0.0004 28 1 1.3588 2.1315 0.0938 29 1 2.6179 1.4046 -0.9332 30 1 4.6681 0.2836 1.8642 31 1 3.5948 -0.6581 0.8016 32 1 6.9758 -1.7874 -0.1230 33 1 4.0719 0.5965 3.4857 34 1 3.6989 2.3365 3.5245 35 1 2.7477 1.1997 4.5103 36 1 -2.9601 1.8949 2.5858 37 1 -2.2659 1.3246 4.1224 38 1 -2.8742 2.9917 3.9851 39 1 -1.5765 4.7000 2.7889 40 1 1.0680 6.1714 2.7532 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000428854122.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:30 Heat of formation + Delta-G solvation = 14.788516 kcal Electronic energy + Delta-G solvation = -22088.600692 eV Core-core repulsion = 18903.916380 eV Total energy + Delta-G solvation = -3184.684312 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.31834 -39.51416 -38.46279 -35.40599 -34.90455 -34.25237 -32.89888 -31.25548 -29.32480 -28.95634 -26.21146 -25.92824 -24.02047 -23.52442 -21.70684 -20.29945 -19.69679 -18.65510 -18.46935 -17.22216 -16.77213 -16.69841 -16.37848 -15.90944 -15.64360 -15.34002 -15.13822 -14.66671 -14.46245 -14.07343 -13.69694 -13.45893 -13.32624 -13.04952 -12.88141 -12.83337 -12.74295 -12.69386 -12.46433 -12.30371 -12.16367 -11.88412 -11.40254 -11.29566 -11.23735 -10.58052 -10.37231 -10.27231 -10.18606 -8.96791 -8.17165 -6.24717 -0.17698 0.07120 1.32143 1.40526 1.41550 1.54837 2.37148 2.41269 2.62744 2.80581 3.15402 3.28562 3.50225 3.93508 3.97143 4.08322 4.12595 4.21149 4.30059 4.37576 4.46400 4.52338 4.72598 4.78454 4.83090 4.85877 4.95565 4.98454 5.05180 5.22381 5.29198 5.32573 5.42533 5.61852 5.66742 5.77351 6.05603 6.10385 6.32914 6.56823 6.60621 6.89262 7.18795 7.43249 8.93799 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022913 B = 0.005010 C = 0.004750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.700237 B = 5587.043897 C = 5892.965082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.193 4.193 3 C 0.100 3.900 4 N -0.516 5.516 5 C 0.206 3.794 6 C -0.517 4.517 7 H 0.055 0.945 8 C 0.007 3.993 9 N -0.930 5.930 10 Si 0.962 3.038 11 H -0.269 1.269 12 H -0.277 1.277 13 H -0.279 1.279 14 C 0.147 3.853 15 H 0.052 0.948 16 C -0.129 4.129 17 C 0.360 3.640 18 N -0.535 5.535 19 C 0.177 3.823 20 C -0.100 4.100 21 C -0.239 4.239 22 C 0.343 3.657 23 O -0.484 6.484 24 N -0.545 5.545 25 H 0.088 0.912 26 H 0.113 0.887 27 H 0.092 0.908 28 H 0.054 0.946 29 H 0.067 0.933 30 H 0.020 0.980 31 H -0.025 1.025 32 H 0.264 0.736 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.073 0.927 36 H 0.097 0.903 37 H 0.081 0.919 38 H 0.110 0.890 39 H 0.186 0.814 40 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.128 9.488 8.194 22.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.213 4.213 3 C -0.028 4.028 4 N -0.240 5.240 5 C 0.080 3.920 6 C -0.555 4.555 7 H 0.073 0.927 8 C -0.191 4.191 9 N -0.571 5.571 10 Si 0.788 3.212 11 H -0.193 1.193 12 H -0.203 1.203 13 H -0.204 1.204 14 C 0.037 3.963 15 H 0.070 0.930 16 C -0.187 4.187 17 C 0.092 3.908 18 N -0.252 5.252 19 C 0.032 3.968 20 C -0.157 4.157 21 C -0.262 4.262 22 C 0.156 3.844 23 O -0.294 6.294 24 N -0.270 5.270 25 H 0.106 0.894 26 H 0.131 0.869 27 H 0.110 0.890 28 H 0.072 0.928 29 H 0.085 0.915 30 H 0.038 0.962 31 H -0.008 1.008 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.092 0.908 36 H 0.115 0.885 37 H 0.100 0.900 38 H 0.129 0.871 39 H 0.203 0.797 40 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges -17.235 9.118 7.604 20.929 hybrid contribution 0.314 -0.048 -0.439 0.542 sum -16.921 9.071 7.165 20.492 Atomic orbital electron populations 1.23667 0.94616 1.01735 0.99759 1.23560 0.97096 0.99558 1.01056 1.21039 0.93365 0.93153 0.95193 1.62310 1.11493 1.50453 0.99732 1.19497 0.88569 0.87477 0.96466 1.21410 1.12729 1.08554 1.12846 0.92721 1.25758 0.98713 0.94833 0.99757 1.70070 1.30529 1.15095 1.41418 0.85436 0.78490 0.78210 0.79097 1.19327 1.20291 1.20435 1.20231 0.90459 0.93202 0.92404 0.93043 1.21742 0.98456 1.02739 0.95803 1.22446 0.90899 0.88481 0.88999 1.68135 1.00291 1.39499 1.17324 1.22357 0.96381 0.88772 0.89324 1.20904 0.87874 1.03831 1.03054 1.23049 0.98930 0.99332 1.04874 1.19852 0.89126 0.86055 0.89368 1.84688 1.88284 1.15806 1.40629 1.67777 1.38550 1.03180 1.17522 0.89416 0.86854 0.88994 0.92759 0.91484 0.96167 1.00778 0.92748 0.92173 0.92159 0.90797 0.88465 0.89990 0.87119 0.79682 0.71228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.14 14.32 67.79 0.97 -4.17 16 2 C -0.19 -7.63 7.65 25.66 0.20 -7.44 16 3 C 0.10 4.39 5.23 85.56 0.45 4.84 16 4 N -0.52 -23.99 4.40 -884.50 -3.89 -27.88 16 5 C 0.21 11.11 4.42 85.55 0.38 11.49 16 6 C -0.52 -30.05 8.43 25.60 0.22 -29.84 16 7 H 0.05 3.21 7.14 -2.90 -0.02 3.19 16 8 C 0.01 0.43 5.46 84.66 0.46 0.89 16 9 N -0.93 -56.14 13.29 21.45 0.28 -55.85 16 10 Si 0.96 45.51 29.54 68.60 2.03 47.54 16 11 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 12 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 13 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 14 C 0.15 5.90 2.02 44.17 0.09 5.98 16 15 H 0.05 2.15 7.24 -2.38 -0.02 2.13 16 16 C -0.13 -4.79 9.03 71.98 0.65 -4.14 16 17 C 0.36 12.68 5.01 138.76 0.70 13.38 16 18 N -0.54 -16.17 10.25 -176.21 -1.81 -17.97 16 19 C 0.18 3.89 6.82 42.46 0.29 4.18 16 20 C -0.10 -1.24 10.22 71.24 0.73 -0.51 16 21 C -0.24 -4.82 9.81 22.54 0.22 -4.60 16 22 C 0.34 9.28 7.83 84.82 0.66 9.94 16 23 O -0.48 -10.87 13.58 -88.24 -1.20 -12.07 16 24 N -0.54 -19.20 9.59 -300.68 -2.88 -22.08 16 25 H 0.09 2.71 7.84 -2.91 -0.02 2.69 16 26 H 0.11 3.11 8.06 -2.91 -0.02 3.08 16 27 H 0.09 4.04 6.83 -2.91 -0.02 4.02 16 28 H 0.05 2.30 6.26 -2.39 -0.01 2.29 16 29 H 0.07 3.22 6.71 -2.39 -0.02 3.20 16 30 H 0.02 1.16 5.91 -2.39 -0.01 1.15 16 31 H -0.03 -1.47 6.42 -2.39 -0.02 -1.48 16 32 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 33 H 0.06 2.40 6.25 -2.39 -0.01 2.39 16 34 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 35 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 36 H 0.10 1.03 8.14 -2.38 -0.02 1.01 16 37 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.11 0.68 8.09 -2.39 -0.02 0.66 16 39 H 0.19 2.16 8.06 -2.91 -0.02 2.14 16 40 H 0.43 4.83 9.06 -74.06 -0.67 4.16 16 Total: -1.00 -72.66 332.96 -1.08 -73.74 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: 0.38 Total: 14.56 kcal Atomic # 6 Polarization: -5.99 SS G_CDS: 6.01 Total: 0.02 kcal Atomic # 7 Polarization: -115.49 SS G_CDS: -8.30 Total: -123.78 kcal Atomic # 8 Polarization: -10.87 SS G_CDS: -1.20 Total: -12.07 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Total: -72.66 -1.08 -73.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428854122.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.525 kcal (2) G-P(sol) polarization free energy of solvation -72.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds