Wall clock time and date at job start Mon Mar 30 2020 02:16:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.39862 * 125.89938 * 2 1 4 4 C 1.35317 * 107.92331 * 179.71655 * 3 2 1 5 5 N 1.34953 * 107.73919 * 0.41735 * 4 3 2 6 6 C 1.46501 * 126.03378 * 179.83905 * 5 4 3 7 7 C 1.50696 * 109.47035 * 124.71866 * 6 5 4 8 8 O 1.21284 * 120.00064 * 0.02562 * 7 6 5 9 9 N 1.34783 * 120.00310 * 179.97438 * 7 6 5 10 10 C 1.46493 * 120.00107 * 179.97438 * 9 7 6 11 11 C 1.50706 * 109.47128 * 90.00402 * 10 9 7 12 12 H 1.08000 * 119.99302 * 359.97438 * 11 10 9 13 13 C 1.37871 * 120.00436 * 179.72498 * 11 10 9 14 14 N 1.31515 * 119.99684 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00405 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47154 * 89.99418 * 15 13 11 17 17 H 1.48493 * 109.47010 * 209.99942 * 15 13 11 18 18 H 1.48502 * 109.46736 * 329.99638 * 15 13 11 19 19 C 1.46497 * 119.99658 * 0.02562 * 9 7 6 20 20 C 1.53008 * 109.46926 * 269.99594 * 19 9 7 21 21 C 1.52995 * 117.49765 * 243.62387 * 20 19 9 22 22 C 1.52997 * 60.00108 * 252.51033 * 21 20 19 23 23 N 1.30836 * 125.89823 * 179.97438 * 2 1 3 24 24 H 1.08998 * 109.47520 * 270.00418 * 1 2 3 25 25 H 1.08998 * 109.47042 * 30.00453 * 1 2 3 26 26 H 1.09004 * 109.46980 * 149.99973 * 1 2 3 27 27 H 1.07999 * 126.04038 * 359.97133 * 3 2 1 28 28 H 1.07997 * 126.13361 * 180.26287 * 4 3 2 29 29 H 1.08999 * 109.47155 * 4.72061 * 6 5 4 30 30 H 1.08997 * 109.47171 * 244.72192 * 6 5 4 31 31 H 1.09001 * 109.47786 * 330.00675 * 10 9 7 32 32 H 1.08998 * 109.47558 * 210.00538 * 10 9 7 33 33 H 0.97004 * 120.00247 * 180.02562 * 14 13 11 34 34 H 1.08998 * 109.47569 * 29.99343 * 19 9 7 35 35 H 1.08997 * 109.47185 * 150.00014 * 19 9 7 36 36 H 1.09004 * 115.54514 * 29.33287 * 20 19 9 37 37 H 1.08995 * 117.50145 * 359.97438 * 21 20 19 38 38 H 1.08999 * 117.49978 * 145.02090 * 21 20 19 39 39 H 1.09000 * 117.49824 * 252.51694 * 22 21 20 40 40 H 1.09002 * 117.50089 * 107.48886 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3272 1.1329 0.0000 4 6 3.6143 0.7153 0.0064 5 7 3.6087 -0.6342 0.0009 6 6 4.7899 -1.5008 0.0015 7 6 4.7121 -2.4551 1.1652 8 8 3.7633 -2.4155 1.9195 9 7 5.6965 -3.3533 1.3672 10 6 5.6212 -4.2806 2.4988 11 6 4.9065 -5.5369 2.0721 12 1 4.5443 -5.6345 1.0593 13 6 4.7196 -6.5636 2.9730 14 7 5.1654 -6.4469 4.2047 15 14 3.8343 -8.1211 2.4439 16 1 4.8216 -9.0965 1.9157 17 1 3.1308 -8.7113 3.6108 18 1 2.8467 -7.7934 1.3844 19 6 6.8424 -3.4015 0.4557 20 6 6.5425 -4.3706 -0.6898 21 6 7.4223 -5.6164 -0.8098 22 6 7.5729 -4.4737 -1.8160 23 7 2.2742 -1.0598 0.0005 24 1 -0.3634 0.0001 1.0276 25 1 -0.3633 0.8899 -0.5139 26 1 -0.3633 -0.8900 -0.5139 27 1 1.9924 2.1597 -0.0004 28 1 4.4892 1.3485 0.0120 29 1 5.6884 -0.8904 0.0916 30 1 4.8264 -2.0658 -0.9299 31 1 5.0746 -3.8118 3.3170 32 1 6.6286 -4.5308 2.8313 33 1 5.0343 -7.1694 4.8386 34 1 7.0268 -2.4065 0.0508 35 1 7.7242 -3.7422 0.9982 36 1 5.4908 -4.4687 -0.9592 37 1 8.2151 -5.7455 -0.0731 38 1 6.9497 -6.5347 -1.1582 39 1 7.1992 -4.6402 -2.8263 40 1 8.4646 -3.8512 -1.7409 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000448915539.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:34 Heat of formation + Delta-G solvation = 73.501524 kcal Electronic energy + Delta-G solvation = -21645.956724 eV Core-core repulsion = 18463.818399 eV Total energy + Delta-G solvation = -3182.138325 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.98538 -39.10458 -37.08623 -34.44238 -33.64541 -32.52673 -30.32236 -29.33778 -27.93587 -26.43973 -25.38499 -22.70150 -22.08803 -20.94248 -20.66004 -19.69976 -18.61281 -16.92452 -16.63129 -16.43721 -15.40842 -15.11731 -14.81207 -14.36208 -14.16432 -13.91273 -13.70248 -13.23866 -12.89169 -12.77383 -12.46928 -12.37665 -12.16495 -11.90012 -11.78651 -11.41241 -11.24966 -11.22448 -10.92204 -10.63497 -10.30695 -10.21565 -9.99617 -9.65123 -9.58113 -9.26830 -8.80582 -8.40984 -8.29234 -7.75386 -6.02162 -4.04938 2.12585 2.64940 3.03806 3.22058 3.31224 3.38478 3.44062 3.78548 4.10387 4.46270 4.64743 4.82453 4.89463 5.05058 5.08206 5.15776 5.28360 5.32074 5.34784 5.41952 5.62895 5.75658 5.76608 5.78064 5.79192 5.95876 5.96977 6.01044 6.22670 6.27181 6.36724 6.54369 6.89665 6.97249 7.19774 7.39790 7.50035 7.94249 8.02891 8.24629 8.29567 8.88137 9.02804 9.59176 11.06482 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014603 B = 0.005619 C = 0.004609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1916.979186 B = 4981.811609 C = 6074.265327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.055 3.945 3 C -0.273 4.273 4 C 0.048 3.952 5 N -0.355 5.355 6 C 0.113 3.887 7 C 0.493 3.507 8 O -0.508 6.508 9 N -0.594 5.594 10 C 0.250 3.750 11 C -0.515 4.515 12 H 0.058 0.942 13 C 0.060 3.940 14 N -0.898 5.898 15 Si 0.895 3.105 16 H -0.281 1.281 17 H -0.286 1.286 18 H -0.274 1.274 19 C 0.143 3.857 20 C -0.159 4.159 21 C -0.161 4.161 22 C -0.190 4.190 23 N -0.256 5.256 24 H 0.074 0.926 25 H 0.072 0.928 26 H 0.069 0.931 27 H 0.143 0.857 28 H 0.170 0.830 29 H 0.116 0.884 30 H 0.109 0.891 31 H 0.042 0.958 32 H 0.032 0.968 33 H 0.262 0.738 34 H 0.065 0.935 35 H 0.080 0.920 36 H 0.104 0.896 37 H 0.095 0.905 38 H 0.090 0.910 39 H 0.088 0.912 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.946 12.490 -11.927 17.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.112 4.112 3 C -0.303 4.303 4 C -0.097 4.097 5 N -0.137 5.137 6 C -0.013 4.013 7 C 0.276 3.724 8 O -0.382 6.382 9 N -0.326 5.326 10 C 0.131 3.869 11 C -0.553 4.553 12 H 0.076 0.924 13 C -0.141 4.141 14 N -0.537 5.537 15 Si 0.723 3.277 16 H -0.207 1.207 17 H -0.212 1.212 18 H -0.199 1.199 19 C 0.019 3.981 20 C -0.179 4.179 21 C -0.198 4.198 22 C -0.228 4.228 23 N -0.078 5.078 24 H 0.093 0.907 25 H 0.091 0.909 26 H 0.088 0.912 27 H 0.161 0.839 28 H 0.187 0.813 29 H 0.134 0.866 30 H 0.126 0.874 31 H 0.060 0.940 32 H 0.050 0.950 33 H 0.072 0.928 34 H 0.084 0.916 35 H 0.099 0.901 36 H 0.122 0.878 37 H 0.113 0.887 38 H 0.109 0.891 39 H 0.107 0.893 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 2.620 11.041 -11.304 16.017 hybrid contribution -0.225 -0.182 -0.232 0.371 sum 2.395 10.859 -11.535 16.022 Atomic orbital electron populations 1.20107 0.87072 1.02697 1.02803 1.22371 0.96962 0.90941 1.00975 1.21274 0.91647 0.99453 1.17929 1.22465 0.99651 0.84726 1.02871 1.48094 1.05134 1.04104 1.56386 1.21680 0.84986 0.93827 1.00770 1.20168 0.83673 0.82255 0.86256 1.90765 1.31112 1.70275 1.46043 1.48215 1.19940 1.34856 1.29635 1.19304 0.97559 0.86924 0.83133 1.21369 1.36627 0.99837 0.97515 0.92383 1.24901 0.95754 0.98667 0.94782 1.69927 1.46706 1.33142 1.03928 0.86542 0.79855 0.83102 0.78236 1.20700 1.21165 1.19931 1.21055 0.89906 0.97331 0.89833 1.22767 0.97135 1.00501 0.97469 1.22870 1.02487 0.92978 1.01436 1.22980 1.01200 1.03704 0.94867 1.77544 0.85994 1.22207 1.22040 0.90743 0.90902 0.91167 0.83904 0.81270 0.86645 0.87358 0.93996 0.94970 0.92821 0.91640 0.90128 0.87775 0.88689 0.89147 0.89327 0.89106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.83 10.45 36.01 0.38 -0.46 16 2 C 0.05 0.88 7.22 -82.41 -0.59 0.29 16 3 C -0.27 -3.73 10.74 -40.02 -0.43 -4.16 16 4 C 0.05 0.65 11.45 -17.22 -0.20 0.45 16 5 N -0.36 -5.96 3.40 -62.55 -0.21 -6.17 16 6 C 0.11 1.69 5.54 -5.20 -0.03 1.66 16 7 C 0.49 10.23 7.70 -10.98 -0.08 10.15 16 8 O -0.51 -13.35 15.29 5.55 0.08 -13.27 16 9 N -0.59 -12.08 2.46 -175.06 -0.43 -12.51 16 10 C 0.25 6.42 5.20 -5.19 -0.03 6.40 16 11 C -0.51 -14.45 9.39 -34.44 -0.32 -14.77 16 12 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 13 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 14 N -0.90 -26.80 13.29 55.43 0.74 -26.06 16 15 Si 0.89 22.25 29.54 -169.99 -5.02 17.22 16 16 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 17 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 18 H -0.27 -6.88 7.11 56.52 0.40 -6.48 16 19 C 0.14 2.14 5.54 -4.04 -0.02 2.12 16 20 C -0.16 -2.37 5.94 -90.62 -0.54 -2.91 16 21 C -0.16 -2.32 10.18 -26.74 -0.27 -2.60 16 22 C -0.19 -2.19 10.25 -26.73 -0.27 -2.46 16 23 N -0.26 -5.00 11.64 33.67 0.39 -4.61 16 24 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 25 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.14 1.50 8.06 -52.49 -0.42 1.08 16 28 H 0.17 1.50 8.06 -52.49 -0.42 1.08 16 29 H 0.12 1.21 7.33 -51.93 -0.38 0.83 16 30 H 0.11 1.46 8.03 -51.93 -0.42 1.04 16 31 H 0.04 1.24 7.42 -51.93 -0.39 0.85 16 32 H 0.03 0.83 7.89 -51.93 -0.41 0.42 16 33 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 34 H 0.07 0.72 6.44 -51.93 -0.33 0.39 16 35 H 0.08 1.19 7.63 -51.93 -0.40 0.79 16 36 H 0.10 1.77 8.14 -51.93 -0.42 1.35 16 37 H 0.09 1.36 8.03 -51.93 -0.42 0.95 16 38 H 0.09 1.35 8.14 -51.93 -0.42 0.92 16 39 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 343.98 15.07 5.18 5.18 Total: -1.00 -36.34 343.98 -7.87 -44.21 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -6.09 Total: 0.66 kcal Atomic # 6 Polarization: -2.15 SS G_CDS: -2.51 Total: -4.66 kcal Atomic # 7 Polarization: -49.83 SS G_CDS: 0.49 Total: -49.35 kcal Atomic # 8 Polarization: -13.35 SS G_CDS: 0.08 Total: -13.27 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -36.34 -7.87 -44.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000448915539.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.711 kcal (2) G-P(sol) polarization free energy of solvation -36.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.210 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds