Wall clock time and date at job start Mon Mar 30 2020 02:16:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.39862 * 125.89938 * 2 1 4 4 C 1.35317 * 107.92331 * 179.71655 * 3 2 1 5 5 N 1.34953 * 107.73919 * 0.41735 * 4 3 2 6 6 C 1.46501 * 126.03378 * 179.83905 * 5 4 3 7 7 C 1.50696 * 109.47035 * 124.71866 * 6 5 4 8 8 O 1.21284 * 120.00064 * 0.02562 * 7 6 5 9 9 N 1.34783 * 120.00310 * 179.97438 * 7 6 5 10 10 C 1.46493 * 120.00107 * 179.97438 * 9 7 6 11 11 C 1.50706 * 109.47128 * 90.00402 * 10 9 7 12 12 H 1.08000 * 119.99302 * 359.97438 * 11 10 9 13 13 C 1.37871 * 120.00436 * 179.72498 * 11 10 9 14 14 N 1.31515 * 119.99684 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00405 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47154 * 89.99418 * 15 13 11 17 17 H 1.48493 * 109.47010 * 209.99942 * 15 13 11 18 18 H 1.48502 * 109.46736 * 329.99638 * 15 13 11 19 19 C 1.46497 * 119.99658 * 0.02562 * 9 7 6 20 20 C 1.53008 * 109.46926 * 269.99594 * 19 9 7 21 21 C 1.52995 * 117.49765 * 243.62387 * 20 19 9 22 22 C 1.52997 * 60.00108 * 252.51033 * 21 20 19 23 23 N 1.30836 * 125.89823 * 179.97438 * 2 1 3 24 24 H 1.08998 * 109.47520 * 270.00418 * 1 2 3 25 25 H 1.08998 * 109.47042 * 30.00453 * 1 2 3 26 26 H 1.09004 * 109.46980 * 149.99973 * 1 2 3 27 27 H 1.07999 * 126.04038 * 359.97133 * 3 2 1 28 28 H 1.07997 * 126.13361 * 180.26287 * 4 3 2 29 29 H 1.08999 * 109.47155 * 4.72061 * 6 5 4 30 30 H 1.08997 * 109.47171 * 244.72192 * 6 5 4 31 31 H 1.09001 * 109.47786 * 330.00675 * 10 9 7 32 32 H 1.08998 * 109.47558 * 210.00538 * 10 9 7 33 33 H 0.97004 * 120.00247 * 180.02562 * 14 13 11 34 34 H 1.08998 * 109.47569 * 29.99343 * 19 9 7 35 35 H 1.08997 * 109.47185 * 150.00014 * 19 9 7 36 36 H 1.09004 * 115.54514 * 29.33287 * 20 19 9 37 37 H 1.08995 * 117.50145 * 359.97438 * 21 20 19 38 38 H 1.08999 * 117.49978 * 145.02090 * 21 20 19 39 39 H 1.09000 * 117.49824 * 252.51694 * 22 21 20 40 40 H 1.09002 * 117.50089 * 107.48886 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3272 1.1329 0.0000 4 6 3.6143 0.7153 0.0064 5 7 3.6087 -0.6342 0.0009 6 6 4.7899 -1.5008 0.0015 7 6 4.7121 -2.4551 1.1652 8 8 3.7633 -2.4155 1.9195 9 7 5.6965 -3.3533 1.3672 10 6 5.6212 -4.2806 2.4988 11 6 4.9065 -5.5369 2.0721 12 1 4.5443 -5.6345 1.0593 13 6 4.7196 -6.5636 2.9730 14 7 5.1654 -6.4469 4.2047 15 14 3.8343 -8.1211 2.4439 16 1 4.8216 -9.0965 1.9157 17 1 3.1308 -8.7113 3.6108 18 1 2.8467 -7.7934 1.3844 19 6 6.8424 -3.4015 0.4557 20 6 6.5425 -4.3706 -0.6898 21 6 7.4223 -5.6164 -0.8098 22 6 7.5729 -4.4737 -1.8160 23 7 2.2742 -1.0598 0.0005 24 1 -0.3634 0.0001 1.0276 25 1 -0.3633 0.8899 -0.5139 26 1 -0.3633 -0.8900 -0.5139 27 1 1.9924 2.1597 -0.0004 28 1 4.4892 1.3485 0.0120 29 1 5.6884 -0.8904 0.0916 30 1 4.8264 -2.0658 -0.9299 31 1 5.0746 -3.8118 3.3170 32 1 6.6286 -4.5308 2.8313 33 1 5.0343 -7.1694 4.8386 34 1 7.0268 -2.4065 0.0508 35 1 7.7242 -3.7422 0.9982 36 1 5.4908 -4.4687 -0.9592 37 1 8.2151 -5.7455 -0.0731 38 1 6.9497 -6.5347 -1.1582 39 1 7.1992 -4.6402 -2.8263 40 1 8.4646 -3.8512 -1.7409 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000448915539.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:33 Heat of formation + Delta-G solvation = 49.394241 kcal Electronic energy + Delta-G solvation = -21647.002094 eV Core-core repulsion = 18463.818399 eV Total energy + Delta-G solvation = -3183.183695 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.12028 -40.64346 -38.34895 -36.12229 -34.93102 -34.51024 -31.50592 -30.55985 -29.62905 -27.75678 -26.90109 -24.58376 -23.11529 -22.03753 -21.89150 -20.89781 -20.03391 -18.67923 -18.14421 -18.01069 -16.94668 -16.60714 -16.21145 -15.93988 -15.49177 -15.06958 -14.85933 -14.53524 -14.28692 -14.25531 -13.79010 -13.64117 -13.47748 -13.31523 -13.12895 -12.89286 -12.84775 -12.69659 -12.54340 -12.27908 -12.24893 -11.66801 -11.35980 -11.24044 -10.90314 -10.69913 -10.60383 -10.08125 -9.50400 -9.41177 -8.23601 -6.34619 1.02356 1.30099 1.33601 1.42960 1.57509 1.69438 1.96942 2.27455 2.39061 3.01406 3.06691 3.46193 3.69141 3.92865 4.00978 4.05283 4.08668 4.19353 4.23748 4.46355 4.49310 4.61082 4.79842 4.81553 4.85190 4.89199 4.96211 5.00012 5.05193 5.13636 5.19908 5.28156 5.34262 5.37469 5.56481 5.80019 5.84840 6.06652 6.18916 6.66854 6.74688 6.91143 7.27104 7.42324 8.83980 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014603 B = 0.005619 C = 0.004609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1916.979186 B = 4981.811609 C = 6074.265327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.041 3.959 3 C -0.283 4.283 4 C 0.057 3.943 5 N -0.373 5.373 6 C 0.125 3.875 7 C 0.483 3.517 8 O -0.577 6.577 9 N -0.595 5.595 10 C 0.266 3.734 11 C -0.522 4.522 12 H 0.048 0.952 13 C 0.008 3.992 14 N -0.929 5.929 15 Si 0.957 3.043 16 H -0.261 1.261 17 H -0.281 1.281 18 H -0.280 1.280 19 C 0.139 3.861 20 C -0.179 4.179 21 C -0.188 4.188 22 C -0.140 4.140 23 N -0.332 5.332 24 H 0.073 0.927 25 H 0.106 0.894 26 H 0.061 0.939 27 H 0.175 0.825 28 H 0.220 0.780 29 H 0.173 0.827 30 H 0.125 0.875 31 H -0.008 1.008 32 H 0.027 0.973 33 H 0.265 0.735 34 H 0.119 0.881 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.092 0.908 38 H 0.076 0.924 39 H 0.103 0.897 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.525 14.352 -14.407 20.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.126 4.126 3 C -0.312 4.312 4 C -0.088 4.088 5 N -0.155 5.155 6 C 0.000 4.000 7 C 0.270 3.730 8 O -0.456 6.456 9 N -0.327 5.327 10 C 0.145 3.855 11 C -0.561 4.561 12 H 0.066 0.934 13 C -0.190 4.190 14 N -0.570 5.570 15 Si 0.782 3.218 16 H -0.186 1.186 17 H -0.207 1.207 18 H -0.205 1.205 19 C 0.017 3.983 20 C -0.199 4.199 21 C -0.225 4.225 22 C -0.178 4.178 23 N -0.154 5.154 24 H 0.092 0.908 25 H 0.125 0.875 26 H 0.080 0.920 27 H 0.192 0.808 28 H 0.237 0.763 29 H 0.190 0.810 30 H 0.143 0.857 31 H 0.010 0.990 32 H 0.045 0.955 33 H 0.074 0.926 34 H 0.137 0.863 35 H 0.100 0.900 36 H 0.094 0.906 37 H 0.110 0.890 38 H 0.095 0.905 39 H 0.121 0.879 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 4.239 12.912 -13.833 19.392 hybrid contribution -0.713 -0.710 0.545 1.144 sum 3.526 12.203 -13.288 18.382 Atomic orbital electron populations 1.20234 0.85379 1.03948 1.03095 1.23058 0.98448 0.91378 0.99716 1.21743 0.91586 1.00246 1.17616 1.23333 1.01417 0.83708 1.00308 1.48250 1.04509 1.05474 1.57277 1.21793 0.86746 0.93543 0.97887 1.21281 0.82260 0.82484 0.86982 1.90727 1.33733 1.72289 1.48860 1.48165 1.21772 1.33654 1.29073 1.18706 0.95899 0.86885 0.84044 1.21573 1.36601 1.00887 0.97012 0.93387 1.25733 0.96520 1.01916 0.94837 1.70035 1.47853 1.34227 1.04891 0.85571 0.78851 0.79664 0.77687 1.18616 1.20692 1.20526 1.21430 0.87614 1.00404 0.88845 1.22620 0.96485 1.01150 0.99627 1.22925 1.02753 0.93239 1.03570 1.23070 1.00174 1.00529 0.93998 1.77458 0.88022 1.24798 1.25168 0.90823 0.87523 0.92027 0.80774 0.76318 0.81016 0.85717 0.98969 0.95533 0.92583 0.86337 0.89958 0.90571 0.88968 0.90535 0.87897 0.85988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.64 10.45 71.24 0.74 -0.90 16 2 C 0.04 1.30 7.22 43.10 0.31 1.61 16 3 C -0.28 -7.03 10.74 21.99 0.24 -6.80 16 4 C 0.06 1.33 11.45 83.54 0.96 2.29 16 5 N -0.37 -11.92 3.40 -351.80 -1.20 -13.11 16 6 C 0.12 3.43 5.54 85.63 0.47 3.91 16 7 C 0.48 20.30 7.70 87.65 0.68 20.97 16 8 O -0.58 -31.95 15.29 -3.04 -0.05 -31.99 16 9 N -0.60 -24.51 2.46 -826.15 -2.03 -26.54 16 10 C 0.27 14.38 5.20 85.64 0.45 14.83 16 11 C -0.52 -30.56 9.39 25.60 0.24 -30.32 16 12 H 0.05 2.84 7.81 -2.91 -0.02 2.82 16 13 C 0.01 0.49 5.46 84.65 0.46 0.96 16 14 N -0.93 -57.34 13.29 21.45 0.28 -57.05 16 15 Si 0.96 46.77 29.54 68.60 2.03 48.80 16 16 H -0.26 -11.88 7.11 99.48 0.71 -11.18 16 17 H -0.28 -13.48 7.11 99.48 0.71 -12.78 16 18 H -0.28 -13.82 7.11 99.48 0.71 -13.12 16 19 C 0.14 3.88 5.54 86.38 0.48 4.36 16 20 C -0.18 -5.07 5.94 -10.79 -0.06 -5.13 16 21 C -0.19 -5.24 10.18 30.59 0.31 -4.93 16 22 C -0.14 -2.71 10.25 30.59 0.31 -2.39 16 23 N -0.33 -13.19 11.64 -47.38 -0.55 -13.74 16 24 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 25 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 26 H 0.06 1.55 8.14 -2.38 -0.02 1.53 16 27 H 0.17 3.03 8.06 -2.91 -0.02 3.00 16 28 H 0.22 2.62 8.06 -2.91 -0.02 2.60 16 29 H 0.17 2.65 7.33 -2.39 -0.02 2.63 16 30 H 0.13 3.03 8.03 -2.39 -0.02 3.01 16 31 H -0.01 -0.50 7.42 -2.39 -0.02 -0.51 16 32 H 0.03 1.44 7.89 -2.39 -0.02 1.43 16 33 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 34 H 0.12 2.03 6.44 -2.39 -0.02 2.01 16 35 H 0.08 2.28 7.63 -2.39 -0.02 2.26 16 36 H 0.08 2.60 8.14 -2.38 -0.02 2.58 16 37 H 0.09 2.58 8.03 -2.39 -0.02 2.56 16 38 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 39 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 40 H 0.12 1.66 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -87.64 343.98 5.09 -82.55 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: 1.02 Total: 12.64 kcal Atomic # 6 Polarization: -7.13 SS G_CDS: 5.58 Total: -1.55 kcal Atomic # 7 Polarization: -106.95 SS G_CDS: -3.49 Total: -110.44 kcal Atomic # 8 Polarization: -31.95 SS G_CDS: -0.05 Total: -31.99 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 2.03 Total: 48.80 kcal Total: -87.64 5.09 -82.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000448915539.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.939 kcal (2) G-P(sol) polarization free energy of solvation -87.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.545 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds